A new asymmetric Pseudo‐Voigt function for more efficient fitting of XPS lines

Asymmetric peak profiles for the application in spectroscopy can be obtained in a simple way by substituting the usually constant full width at half maximum parameter in Pseudo‐Voigt functions with an energy‐dependent expression, for instance of sigmoidal shape. While this approach has been successfully applied to vibrational spectra, we find that the resulting curves are less suitable for least‐squares fits of X‐ray photoelectron spectroscopy (XPS) data. However, if one additionally allows a variable displacement of the sigmoidal step relative to the peak, excellent fitting results can be obtained. We demonstrate the applicability of our extended approach on several inherently asymmetric XPS lines, i.e. the C 1s signal of graphite and C₂H₂/Pd(100), the 3d_5/2–3d_3/2 doublet of palladium, and the 4f_7/2–4f_5/2 doublet of platinum. Comparison of the corresponding fit results with the results obtained by the application of more elaborate, theory‐based line profiles (Doniach‐?unji? and Mahan functions) shows that the modified Pseudo‐Voigt function gives practically identical results in terms of peak shape and area, while requiring much less computational effort since no convolution procedures are required for its calculation. Thus, this function is most suitable for application in one of the following situations: (i) the peak shape of a given signal is known but cannot be calculated with ease, and (ii) the theoretical peak shape is not (yet) known, however, one wants to perform a first quantitative screening of the data at issue. Copyright © 2014 John Wiley & Sons, Ltd.     

Infrared absorption spectra of As-Se glasses

IR absorption spectra of As-Se glasses have been studied over a wide range of compositions. Various two-phonon, multiphonon (combination tones) and impurity absorptions have been identified. Compositional variation of relative band intensities has been explained in terms of the chemically ordered network model.     

Theoretical interpretation of the infrared lineshape of liquid and gaseous acetic acid

We have applied a model used recently [P. Blaise, M.J. Wojcik, O. Henri-Rousseau, J. Chem. Phys. 122 (2005) 64306] to unpolarized ν_X–H infrared lineshapes of cyclic (CH₃COOH)₂ in liquid and gaseous phases and (CD₃COOH)₂ in gaseous phase and taking into account the IR A_g forbidden transition. This model incorporates (i) the anharmonic coupling between the high frequency mode and the H-bond bridge, (ii) the Davydov coupling between the excited states of the two moieties, (iii) the quantum direct and indirect dampings. The approach reproduces satisfactorily the main features of the experimental lineshapes by using a minimum number of independant parameters.     

Theoretical anharmonic Raman and infrared spectra with vibrational assignments for monofluoroaniline isomers

The ortho-meta-, and para-fluoro substituted anilines are prototype molecules for investigation of the interactions of both the amino group and the fluorine atom with the aromatic ring. The molecular structures, natural atomic charges and theoretical anharmonic Raman and infrared spectra of the three fluoroaniline isomers have been calculated by using the density functional B3LYP method with the extended 6-311++G(df,pd) basis set. The Raman and infrared spectra of 2FA, 3FA, and 4FA have been recorded. The detailed vibrational assignments of the experimental spectra have been made on the basis of the calculated potential energy distributions, PEDs. The effect of fluorine substituent on the aniline ring geometry and charge distribution, the nature of the characteristic “marker bands” and a quenching of intensities of some bands are discussed. It is shown that the frequencies of the NH₂ stretching vibrations depend on the degree of pyramidalization of the C-NH₂ group, in the isomers. In 2FA and 3FA, the NH₂ stretching frequencies are higher than those in 4FA. This corresponds to a more flattened structure of the amino group in 2FA and 3FA, in comparison to 4FA.     

A comparison of light scattering and far infrared absorption spectra of simple liquids

Light scattering and far infrared absorption spectra of CCl₄, C₂Cl₄, C₆H₁₂, CHCl₃, and CH₂Cl₂ in the liquid phase have been obtained in the range of 2 – 200 and 20 – 200 cm^?1 respectively. The energy absorption spectra obtained by the two techniques and the corresponding relaxation times were compared for each liquid. We observe systematic differences between the energy absorption profiles obtained from the light scattering spectra and the far infrared absorption spectras. We also find generally shorter relaxation times from the infrared absorption spectra. Despite the similarity of the physical processes leading to light scattering and to far infrared absorption some significant differences are observed (ref. 1,2).     

Raman and infrared spectra, conformational stability, ab initio calculations and vibrational assignments for 2-chloroethyl silane

The infrared (3500–30 cm⁻¹) spectra of gaseous and solid and the Raman (3500–10 cm⁻¹) spectra of liquid with quantitative depolarization ratios and solid 2-chloroethyl silane, ClCH₂CH₂SiH₃, have been recorded. Similar data have been recorded for the Si–d₃ isotopomer. These data indicate that two conformers, trans and gauche, are present in the fluid states but only one conformer, trans, is present in the solid. The mid-infrared spectra of the sample dissolved in liquified xenon as a function of temperature (−55 to −100°C) has been recorded. The enthalpy difference between the conformers has been determined to be 181±12 cm⁻¹ (2.17±0.14 kJ/mol) with the trans rotamer the more stable form. From the isolated Si–H frequencies from the Si–d₂ isotopomer the r_o Si–H distances of 1.484 and 1.483 Å for the trans and 1.481 for the gauche conformers have been obtained. Ab initio calculations have been carried out with several different basis sets up to MP2/6-311+G** from which structural parameters and conformational stabilities have been determined. With all the basis sets the trans form is predicted to be the more stable conformer which is consistent with the experimental results. These results are compared to the corresponding quantities for the carbon analogue.     

Measurement of absorption coefficients in vapour-phase infrared spectra by means of gas chromatographic-infrared systems

In addition to stopped-flow gas chromatographic-infrared (GC-IR) systems and static vapour cells, GC-IR systems without a stopped-flow facility can also be used to measure vapour-phase IR spectra of appropriate quality. An expression was derived for the determination of concentrations in this type of measurement, which can be used to determine integrated absorption coefficients of practical and theoretical importance.     

Conformational stabilities of dimethylmethoxyphosphine and dimethyl(methylthio)phosphine from temperature dependent infrared spectra of rare gas solutions

Variable temperature (−55 to −150°C) studies of the infrared spectra (3500 to 400 cm⁻¹) of dimethylmethoxyphosphine, (CH₃)₂POCH₃ and dimethyl(methylthio)phosphine, (CH₃)₂PSCH₃ dissolved in liquid krypton and/or xenon have been recorded. From these data, the enthalpy differences have been determined to be 393±50 cm⁻¹ (4.71±0.60 kJ/mol), for (CH₃)₂POCH₃ with the near-cis conformer the more stable rotamer and 80±10cm⁻¹ (0.96±0.12 kJ/mol) for (CH₃)₂PSCH₃ with the cis conformer the more stable form. Complete vibrational assignments are presented for both molecules, which are consistent with the predicted frequencies obtained from the ab initio MP2/6-31G(d) calculations. The optimized geometries, conformational stabilities, harmonic force fields, infrared intensities, Raman activities, and depolarization ratios have been obtained from RHF/6-31G(d) and/or MP2/6-31G(d) ab initio calculations. These quantities are compared to the corresponding experimental quantities when appropriate as well as with some corresponding results for some similar molecules.     

A simple method for predicting the frequency of the infrared inactive carbonyl stretching mode in LM(CO)5 molecules with C4V symmetry

The paper presents a new method for predicting the frequency of the b₁ mode, which is infrared-inactive, in complexes of the type LM(CO)₅ belonging to C_4V point group. The method was based on the relation λ₃=λ₄+[(1−δ/δ)](λ₁−λ₂), where δ=(λ₁−λ₂)/(λ₁−λ₂+λ₃−λ₄), λ₁, λ₂, λ₃ and λ₄ are the λ parameters of the , , b₁ and e modes, respectively. For a large numbers of complexes of the type LM(CO)₅ the average value of δ was found to be 0.80, with a standard deviation of 0.02. With the use of average value of δ, the frequencies of b₁ mode were estimated. The result obtained indicated that there exists a rather good fit between observed and calculated frequencies, with a mean error of 2.7 cm⁻¹. In addition, it was shown that the δ parameter can be used as a criterion of the correct band assignment for the complexes understudy.     

Far infrared spectra, conformational equilibria, vibrational assignments, ab initio calculations and structural parameters for 2-bromoethanol

The far infrared spectrum from 370 to 50 cm⁻¹ of gaseous 2-bromoethanol, BrCH₂CH₂OH, was recorded at a resolution of 0.10 cm⁻¹. The fundamental O–H torsion of the more stable gauche (Gg′) conformer, where the capital G refers to internal rotation around the C–C bond and the lower case g to the internal rotation around the C–O bond, was observed as a series of Q-branch transitions beginning at 340 cm⁻¹. The corresponding O–H torsional modes were observed for two of the other high energy conformers, Tg (285 cm⁻¹) and Tt (234 cm⁻¹). The heavy atom asymmetric torsion (rotation around C–C bond) for the Gg′ conformer has been observed at 140 cm⁻¹. Variable temperature (−63 to −100°C) studies of the infrared spectra (4000–400 cm⁻¹) of the sample dissolved in liquid xenon have been recorded. From these data the enthalpy differences have been determined to be 411±40 cm⁻¹ (4.92±0.48 kJ/mol) for the Gg′/Tt and 315±40 cm⁻¹ (3.76±0.48 kJ/mol) for the Gg′/Tg, with the Gg′ conformer the most stable form. Additionally, the infrared spectrum of the gas, and Raman spectrum of the liquid phase are reported. The structural parameters, conformational stabilities, barriers to internal rotation and fundamental frequencies have been obtained from ab initio calculations utilizing different basis sets at the restricted Hartree–Fock or with full electron correlation by the perturbation method to second order. The theoretical results are compared to the experimental results when appropriate. Combining the ab initio calculations with the microwave rotational constants, r₀ adjusted parameters have been obtained for the three 2-haloethanols (F, Cl and Br) for the Gg′ conformers.     

简单烯烃不对称环氧化的手性金属配合物催化剂

介绍了多类简单烯烃不对称环氧化反应的手性过渡金属配合物催化剂系统的催化效果。论述了配体结构与配合物作为环氧化反应催化剂的活性，稳定性，催化效率的关系。从配合物的电子和立体因素，几何构型与过渡态的构象和非对映异构体的能量差别探讨对不对称诱导效果的影响。同时陈述机理的研究情况。     

Asymmetric least squares for multiple spectra baseline correction

In this paper, based on asymmetric least squares smoothing, a new algorithm for multiple spectra baseline correction is proposed. By means of the similarity among the multiple spectra, the algorithm estimates the baselines by penalizing the differences in the baseline corrected signals, which makes the algorithm possible to eliminate scatter effects on the spectra. In addition, a relaxation factor which measures the similarity of the baseline corrected spectra is incorporated into the optimization model and an alternate iteration strategy is used to solve the optimization problem. The proposed algorithm is fast and can output multiple baselines simultaneously. Experimental results on both simulated data and real data demonstrate the effectiveness and efficiency of the algorithm.     

Molecular and electronic structures, infrared spectra, and vibrational assignment for ap and sc conformers of hexafluoro-iso-propanol

Comprehensive studies of the molecular structures, vibrational frequencies and infrared intensities of the antiperiplanar (ap) and synclinal (sc) conformers of 1,1,1,3,3,3-hexafluoro-2-propanol (HFIP) have been performed by the density functional (B3LYP) method using the extended 6-311++G(df,pd) basis set. The detailed natural bond orbital (NBO) analysis has revealed the nature of the hyperconjugative interactions, which stabilize each conformer, in the gas phase. The mid-infrared spectra of HFIP in carbon tetrachloride solution were measured, and the experimental intensities of each conformer were obtained by the curve–resolution procedure. The relative abundance of the two conformers, calculated from the relative intensities, shows nearly equimolar ratio (N_sc/N_ap ≈ 1), in this solution. The DFT-predicted frequencies show very good agreement with the experimental data. The clear-cut vibrational assignment for each conformer is reported on the basis of the calculated potential energy distributions. Several controversies in an earlier assignment of HFIP have been elucidated.     

Polycrystalline polyaniline with strong infrared absorption

Orthorhombic polycrystals of polyaniline with regular low-dimensional nanostructures are successfully fabricated by using a simultaneous redoping-reprecipitation approach. The protonation reaction happening at the same time with the reprecipitation is confirmed to be the key point for the formation of the special polycrystalline nanostructures. Experimental results indicate that the obtained polycrystals are composed of microcrystalline domains with ordered structures and amorphous matrix with disordered molecular arrangements, and as a result, exhibit an unusual strong infrared absorption over the entire infrared region. In addition, with the help of the special characteristics of the simultaneous redoping-reprecipitation process, d-camphorsulfonic acid-doped polyaniline polycrystals are prepared and show an exceptional optical property without chirality of the main chains.     

Ab initio molecular orbital calculations of the infrared spectra of hydrogen-bonded complexes of water,ammonia and hydroxylamine

Summary The geometries of three hydrogen-bonded dimers of hydroxylamine have been optimized, at the MP2 level of theory, using the 6-31G** basis set. These calculations yielded three separate local minima on the dimer potential energy surface. The interaction energies of these three species have been calculated, and corrected for basis set superposition error. The infrared band wavenumbers and intensities have been computed, and the monomer-dimer wavenumber shifts and intensity enhancements rationalized in terms of the types and strengths of hydrogen bonds present. The predicted wavenumbers have been correlated with those measured in a recent matrix isolation spectroscopic study, and an argument for the structure of the preferred dimer has been presented.     

Crystal structure and infrared spectra of dicesium trans-tetraaquadichlorochromium(III) chloride

The crystal structure of dicesium trans-tetraaquadichlorochromium(III) chloride Cs₂Cr^IIICl₅·4H₂O with trans-[M^IIIX₂(H₂O)₄]⁺ complex ions (space group C2/c, Z=4, a=1915.3(4) pm, b=614.1(1) pm, c=1392.0(3) pm, and β=118.24(3)°, final R1=0.0246 for 2100 unique reflections) was redetermined by single-crystal X-ray diffraction studies. It was found to crystallize in a 2c super structure of the structure reported previously (Inorg. Chem. 20 (1981) 1566; Inorg. Chem. 36 (1997) 2248). The obtained structure data now agree with the results of infrared spectroscopic studies, which has been confirmed in this work, namely that there are two different hydrate H₂O molecules in the structure. Phase transitions, static or dynamic disorder of the hydrate H₂O molecules, and space group C2/m proposed in the literature were ruled out. The coordinates of the four hydrogen positions derived from the X-ray data have been improved via the O–H distances derived from the wave numbers of the OD stretching modes of matrix isolated HDO molecules (2426, 2323, and 2306 cm⁻¹, 263 K) by using the ν_OD versus r_O–H correlation curve reported in the literature (J. Mol. Struct. 404 (1997) 63). The ν_OD versus r_HCl correlation curve reported by Mikenda (J. Mol. Struct. 147 (1986) 1) should be improved, especially for strong hydrogen bonds. The two hydrate H₂O molecules of the title compound are strongly distorted with a weak and a relatively strong O–HCl hydrogen bond each thus intramolecular coupling of the two OH stretching vibrations to coupled ones is largely reduced and, hence, the wavenumbers of the OH and OD stretching modes of the HDO molecules mainly resemble those of the H₂O and D₂O molecules. The strength of the hydrogen bonds is in accordance with the predictions of the competitive and synergetic effects. Chloro ligands are weaker hydrogen bond acceptor groups than chloride ions.     

Infrared and Raman spectra, conformational stability, ab initio calculations, and vibrational assignments for methylaminothiophosphoryl difluoride

Infrared spectra (4000–50 cm⁻¹) of the vapor, amorphous and crystalline solids and Raman spectra (3600–10 cm⁻¹) of the liquid with qualitative depolarization data as well as the amorphous and crystalline solids of methylaminothiophosphoryl difluoride, CH₃N(H)P(=S)F₂, and three deuterated species, CD₃N(H)P(=S)F₂, CH₃N(D)P(=S)F₂, and CD₃N(D)P(=S)F₂, have been recorded. The spectra indicate that in the vapor, liquid and amorphous solid a small amount of a second conformer is present, whereas only one conformer remains in the low temperature crystalline phase. The near-infrared spectra of the vapor confirms the existence of two conformers in the gas phase. Asymmetric top contour simulation of the vapor shows that the trans conformer is the predominant vapor phase conformer. From a temperature study of the Raman spectrum of the liquid the enthalpy difference between the trans and near-cis conformers was determined to be 368±15 cm⁻¹ (4.41±0.2 kJ/mol), with the trans conformer being thermodynamically preferred. Ab Initio calculations with structure optimization using the 6-31G(d) and 6-311+G(d,p) basis sets at the restricted Hartree–Fock (RHF) and/or with full electron correlation by the perturbation method to second order (MP2) support the occurrence of near-trans (5° from trans) and near-cis (20° from cis) conformers. From the RHF/6-31G(d) calculation the near-trans conformer is predicted to be the more stable form by 451 cm⁻¹ (5.35 kJ/mol) and from the MP2/6-311+G(d,p) calculation by 387 cm⁻¹ (4.63 kJ/mol). All of the normal modes of the near-trans rotamer have been assigned based on infrared band contours, depolarization values and group frequencies and the assignment is supported by the normal coordinate calculation utilizing harmonic force constants from the MP2/6-31G(d) ab initio calculations.