Hollow spherical supramolecular dendrimers

The synthesis of a library containing 12 conical dendrons that self-assemble into hollow spherical supramolecular dendrimers is reported. The design principles for this library were accessed by development of a method that allows the identification of hollow spheres, followed by structural and retrostructural analysis of their Pm3n cubic lattice. The first hollow spherical supramolecular dendrimer was made by replacing the tapered dendron, from the previously reported tapered dendritic dipeptide that self-assembled into helical pores, with its constitutional isomeric conical dendron. This strategy generated a conical dendritic dipeptide that self-assembled into a hollow spherical supramolecular dendrimer that self-organizes in a Pm3n cubic lattice. Other examples of hollow spheres were assembled from conical dendrons without a dipeptide at their apex. These are conical dendrons originated from tapered dendrons containing additional benzyl ether groups at their apex. The inner part of the hollow sphere assembled from the dipeptide resembles the path of a spherical helix or loxodrome and, therefore, is chiral. The spheres assembled from other conical dendrons are nonhelical, even when they contain stereocenters on the alkyl groups from their periphery. Functionalization of the apex of the conical dendrons with diethylene glycol allowed the encapsulation of LiOTf and RbOTf in the center of the hollow sphere. These experiments showed that hollow spheres function as supramolecular dendritic capsules and therefore are expected to display functions complementary to those of other related molecular and supramolecular structures.     

The effect of the shape of a mesogenic group on the structure of supramolecular aggregates based on wedge-shaped and cone-shaped dendrons

This review addresses the key principles underlying the formation of liquid crystalline phases based on wedge-shaped and cone-shaped dendrons of different chemical nature. Despite rich phase diversity of the above systems, the development of a mesophase can be reliably predicted by the geometric model, which compares the shape of a wedge dendron with the radial density distribution in the relevant Voronoi polyhedra. 2D columnar phases formed by chiral [7]-heterohelicene molecules with long aliphatic side chains are described in detail. The as-formed columnar aggregates are shown to possess a helical 13₂ symmetry and are composed of thirteen blocks, and each block involves six molecules. In this case, the internal structure of the first-level (lower) supramolecular aggregate appears to be different from that of the helical supramolecular structure.     

A new molecular scaffold for the formation of supramolecular peptide double helices: the crystallographic insight

[structure: see text]. A series of water-soluble synthetic dipeptides (1-3) with an N-terminally located beta-alanine residue, beta-alanyl-l-valine (1), beta-alanyl-l-isoleucine (2), and beta-alanyl-l-phenylalanine (3), form hydrogen-bonded supramolecular double helices with a pitch length of 1 nm, whereas the C-terminally positioned beta-alanine containing dipeptide (4), l-phenylalanyl-beta-alanine, does not form a supramolecular double helical structure. beta-Ala-Xaa (Xaa = Val/Ile/Phe) can be regarded as a new motif for the formation of supramolecular double helical structures in the solid state.     

Molecular structure of helical supramolecular dendrimers

The molecular structure of helical supramolecular dendrimers generated from self-assembling dendrons and dendrimers and from self-organizable dendronized polymers was elucidated for the first time by the simulation of the X-ray diffraction patterns of their oriented fibers. These simulations were based on helical diffraction theory applied to simplified atomic helical models, followed by Cerius2 calculations based on their complete molecular helical structures. Hundreds of samples were screened until a library containing 14 supramolecular dendrimers and dendronized polymers provided a sufficient number of helical features in the X-ray diffraction pattern of their oriented fibers. This combination of techniques provided examples of single-9(2) and -11(3) helices, triple-6(1), -8(1), -9(1), and -12(1) helices, and an octa-32(1) helix that were assembled from crownlike dendrimers, hollow and nonhollow supramolecular crownlike dendrimers, hollow and nonhollow supramolecular disklike dendrimers, and hollow and nonhollow supramolecular and macromolecular helicene-like architectures. The method elaborated here for the determination of the molecular helix structure was transplanted from the field of structural biology and will be applicable to other classes of synthetic helical assemblies. The determination of the molecular structure of helical supramolecular assemblies is expected to provide an additional level of precision in the design of helical functional assemblies resembling those from biological systems.     

Single-Crystal-to-Single-Crystal Topochemical Synthesis of a Collagen-inspired Covalent Helical Polymer

There is much demand for crystalline covalent helical polymers. Inspired by the helical structure of collagen, we synthesized a covalent helical polymer wherein the repeating dipeptide Gly-Pro units are connected by triazole linkages. We synthesized an azide and alkyne-modified dipeptide monomer made up of the repeating amino acid sequence of collagen. In its crystals, the monomer molecules aligned in head-to-tail fashion with proximally placed azide and alkyne forming supramolecular helices. At 60 °C, the monomer underwent single-crystal-to-single-crystal (SCSC) topochemical azide-alkyne cycloaddition polymerization, yielding a covalent helical polymer as confirmed by single-crystal X-ray diffraction (SCXRD) analysis. Compared to the monomer crystals, the polymer single-crystals were very strong and showed three-fold increase in Young's modulus, which is higher than collagen, many synthetic polymers and other materials. The crystals of this covalent helical polymer could bear loads as high as 1.5 million times of their own weight without deformation. These crystals could also withstand high compression force and did not disintegrate even at an applied force of 98 kN. Such light-weight strong materials are in demand for various technological applications.     

Supramolecular Assembly of C3 Peptidic Molecules into Helical Polymers

Self‐assembly of C₃ discotic molecules bearing dipeptide pendants into helical supramolecular polymers is investigated. The dipeptides are constituted from glycine and alanine with altered sequence, aiming at modulating the steric hindrance and examining the steric effects on the assembly. This steric hindrance effect is further illustrated with a dipeptide formed from glycine and valine, which carries a much larger isopropyl side unit. Their supramolecular polymerization is examined in various organic solvents and at different temperatures. The assembly morphology is directly visualized with atomic force microscopy. It is found that small changes in the dipeptide motifs in combination with solvent structure and the solution concentrations lead to different expression of the supramolecular assembly.

     

Programming the supramolecular helical polymerization of dendritic dipeptides via the stereochemical information of the dipeptide

Many natural biomacromolecules are homochiral and are built from constituents possessing identical handedness. The construction of synthetic molecules, macromolecules, and supramolecular structures with tailored stereochemical sequences can detail the relationship between chirality and function and provide insight into the process that leads to the selection of handedness and amplification of chirality. Dendritic dipeptides, previously reported from our laboratory, self-assemble into helical porous columns and serve as fundamental mimics of natural porous helix-forming proteins and supramolecular polymers. Herein, the synthesis of all stereochemical permutations of a self-assembling dendritic dipeptide including homochiral, heterochiral, and differentially racemized variants is reported. A combination of CD/UV-vis spectroscopy in solution and in film, X-ray diffraction, and differential scanning calorimetry studies in solid state established the role of the stereochemistry of the dipeptide on the thermodynamics and mechanism of self-assembly. It was found that the highest degree of stereochemical purity, enantiopure homochiral dendritic dipeptides, exhibits the most thermodynamically favorable self-assembly process in solution corresponding to the greatest degree of helical order and intracolumnar crystallization in solid state. Reducing the stereochemical purity of the dendritic dipeptide through heterochirality or by partially or fully racemizing the dendritic dipeptide destructively interferes with the self-assembly process. All dendritic dipeptides were shown to coassemble into single columns regardless of their stereochemistry. Because these columns exhibit no deracemization, the thermodynamic advantage of enantiopurity and homochirality suggests a mechanism for stereochemical selection and chiral amplification.     

Self-assembly of hybrid dendrons with complex primary structure into functional helical pores

The synthesis of three libraries of self-assembling hybrid dendrons containing a primary structure based on the sequence (4-3,4-3,5)12G2-CO(2)CH(3) generated from benzyl ether, biphenyl-4-methyl ether, and AB(2) repeat units constructed from (AB)(y)--AB(2) combinations of benzyl ethers, is reported. The structural and retrostructural analysis of their supramolecular dendrimers facilitated the discovery of new architectural principles that lead to the assembly of functional helical pores. The self-assembly of an example of hybrid dendron containing -H, -CO(2)CH(3), -CH(2)OH, -COOH, -COOK, -CONH(2), -CONHCH(3), -CO(2)(CH(2))(2)OCH(3), -(R) and -(S)-CONHCH(CH(3))C(2)H(5) as X-groups at the apex demonstrated that these self-assembling dendrons provide the simplest strategy for the design and synthesis of porous columns containing a diversity of hydrophilic and hydrophobic functional groups in the inner part of the pore. The results reported here expand the scope and limitations of dendrons available for the self-assembly of functional pores that previously were generated mostly from dendritic dipeptides, to simpler architectures based on hybrid dendrons.     

Tuning mechanism in helical columnar thiophene host system with 2-thienylacetic acid by using (1R,2S)-2-amino-1,2-diphenylethanol

A tunable supramolecular thiophene host system with a chiral channel-like cavity is developed using (1R,2S)-2-amino-1,2-diphenylethanol. This thiophene host system possesses a chiral helical columnar structure. The chiral cavities are formed by the self-assembly of the helical column, and guest molecules are included by varying the helical structure and packing arrangement of this column.     

Co‐Assembled Supramolecular Nanostructure of Platinum(II) Complex through Helical Ribbon to Helical Tubes with Helical Inversion

We demonstrated the morphology transformation of co‐assemblies based on terpyridine‐based ligands ( 1R and 1S ) possessing R‐ or S‐alanine analogues and their platinum(II) complex ( 2R‐Pt and 2S‐Pt ). The right‐handed helical ribbon of the co‐assembly formed with 0.5 equivalents of 2R‐Pt to 1R was converted into the left‐handed helical ribbon with 0.6 equivalents of 2R‐Pt . The left‐handed helical ribbon structure of the co‐assembly became a tubular structure in the presence of 0.8–1.0 equivalents of 2R‐Pt . The morphology transformation via helical inversion at the supramolecular level was due to an orientation change of the amide groups caused by non‐covalent Pt???Pt interactions between the terpyridine of 2R‐Pt and that of 2R‐Pt . This study provides insights into controlling the morphology of the transformation of helical ribbons into tubular structures through helicity inversion in co‐assembled supramolecular nanostructures based on platinum(II) complexes.     

Hierarchical self-assembly of amphiphilic peptide dendrons: evolution of diverse chiral nanostructures through hydrogel formation over a wide pH range

An amphiphilic dendron containing three dendrite L-glutamic acid units and a long alkyl chain was synthesized by a convergent method. It was found that the dendron could form hydrogels over a wide pH range from 2 to 13. Moreover, accompanying the pH change, the compounds self-assembled into various chiral structures: from helical nanotube, helical nanotube with a string of beads, and coiled superhelix to dendrite nanostructures, such as pine, feather, etc. A series of characterizations based on TEM observations, X-ray diffraction and FTIR spectroscopic measurements revealed that the dendron formed a bilayer first and then hierarchically self-assembled into various chiral nanostructures. The four carboxylic acid groups and three amide groups played an important role in the self-assembly. The interaction between the multiamide groups stabilized the bilayer structures, whereas the ionization degree of the carboxylic acids was responsible for the formation of various chiral structures. The work presented a hydrogel system with wide pH adaptability and showed the regulation on chiral structures by simple pH variations.     

A helical, aromatic, peptide nanotube

[Structure: see text] The self-assembly in the crystal state of the terminally protected, linear dipeptide Boc-(S,S)c3diPhe-(R,R)c3diPhe-NHiPr (1) through intermolecular hydrogen bonds leads to the formation of a supramolecular helix of large diameter (18 A), internally decorated with phenyl rings. As a result, a hollow helical channel large enough to accommodate guest molecules is observed. This supramolecular structure differs from previous examples of peptide nanotubes. Compound 1 incorporates a highly restricted cyclopropane phenylalanine analogue (c3diPhe) with remarkable conformational properties.     

Self-assembly and gelation behavior of tris(phenylisoxazolyl)benzenes

Low-molecular-mass organic gelators (LMOG), tris(phenylisoxazolyl)benzenes, were synthesized, and their self-assembling behavior was examined using (1)H NMR and UV-vis absorption spectroscopies. They turned into a gel in both nonpolar and highly polar solvents such as methylcyclohexane, ether, acetone, dimethylsulfoxide, etc. Field emission scanning electron microscopy (FESEM) observation of the xerogels of 1 and 3 possessing the saturated alkyl chains revealed that well-developed straight fibers were formed, whereas the unsaturated termini of the alkyl chains of 2 promoted the formation of both the right- and left-handed helical fibers. The self-association behavior of 1, 2, and 5 in solution were investigated using (1)H NMR and UV-vis spectroscopies. The flat aromatic compound 1 stacked in a columnar fashion along its C(3) axis via π-π stacking interactions. The assemblies were regulated by the peripheral alkyl substituents; the saturated alkyl groups facilitated the assemblies while terminal double bonds impeded the intermolecular association, and the branched substituents obviously interfered in the formation of the stacks, probably due to steric requirements. Theoretical calculations suggest that the three dipoles of the isoxazole groups adopt the circular array. The conformational search of the hexameric stacks of 4 using MacroModel V9.1 gave rise to two major conformers: one is nonhelical and the other is helical. Further detailed structural analysis of the assemblies of chiral 5 using circular dichroism (CD) measurements indicated that their assemblies adopt helical structures in solution. CD spectra and DFT calculations revealed that R-5 forms a left-handed supramolecular helicate. The coassembly of R- and S-5 displayed chiral amplification, since the chiral information from 5 was transferred to the supramolecular chirality of the helical assemblies of 1. A small amount of optically active 5 provided enough chiral stimulus to produce a remarkable chiral response and supramolecular helical structures of 1.     

Supra‐dendron Gelator Based on Azobenzene–Cyclodextrin Host–Guest Interactions: Photoswitched Optical and Chiroptical Reversibility

A novel amphiphilic dendron ( AZOC₈GAc ) with three l ‐glutamic acid units and an azobenzene moiety covalently linked by an alkyl spacer has been designed. The compound formed hydrogels with water at very low concentration and self‐assembled into chiral‐twist structures. The gel showed a reversible macroscopic volume phase transition in response to pH variations and photo‐irradiation. During the photo‐triggered changes, although the gel showed complete reversibility in its optical absorptions, only an incomplete chiroptical property change was achieved. On the other hand, the dendron could form a 1:1 inclusion complex through a host–guest interaction with α‐cyclodextrin (α‐CD), designated as supra‐dendron gelator AZOC₈GAc/α‐CD . The supra‐dendron showed similar gelation behavior to that of AZOC₈GAc , but with enhanced photoisomerization‐transition efficiency and chiroptical switching capacity, which was completely reversible in terms of both optical and chiroptical performances. The self‐assembly of the supra‐dendron is a hierarchical or multi‐supramolecular self‐assembling process. This work has clearly illustrated that the hierarchical and multi‐supramolecular self‐assembling system endows the supramolecular nanostructures or materials with superior reversible optical and chiroptical switching.     

Supramolecular interactions in a family of dinuclear helicates in the solid-state

ABSTRACT

Metallo-helicates are a commonly encountered assembly within supramolecular chemistry. Interest in these architectures stems from their inherent helical chirality which positions them for a diverse range of applications such as catalysis and non-linear optics (NLO). The current study uses Co(II) dinuclear double helicates as versatile supramolecular synthons. The ditopic ligand, L, features two tridentate quinolinyl-hydrazone binding sites imparting it with hydrogen bond donors and π-faces for secondary supramolecular interactions. Incorporation of L into [Co₂(L)₂]⁴⁺ helical assemblies results in a helical cationic supramolecular synthon with moieties predisposed to forming π-π stacking and hydrogen bond interactions. The single-crystal X-ray structures of [Co₂(L)₂]X₄ (X = ClO₄ ^?, BF₄ ^? and CF₃SO₃ ^?) revealed a variety of anion dependent hydrogen bond networks arising through the interaction of the hydrazide hydrogen with the anion. These interactions in turn strongly influence the nature of the π-π stacking interactions of the quinoline moieties which can be analysed via the Hirshfield surface.     

Folded metallodendrons: shell-selective metal coordination and conformational properties

The synthesis, structure, and conformational properties of folded metallodendrons are described. The enhanced coordination ability of oxazoline-functionalized pyridyl-2,6-dicarboxamides, compared with pyridyl-2.6-diarylamides, permits unique metals to be installed at the peripheral and focal shells of the dendron. Circular dichroism (CD) studies and X-ray crystallography indicate that the intrinsic helical preference of the parent dendron is not perturbed by coordination. However, the CD spectra become insensitive to temperature due to an increase in structural rigidity that occurs upon metal coordination. [structure: see text]     

Comparison of the supramolecular structures formed by a polymethacrylate with a highly tapered side chain and its monomeric precursor

Insight into the supramolecular structure formed by a polymethacrylate with a highly tapered side chain is obtained from parallel X-ray analysis of oriented fibers of the polymer and its monomeric precursor. The polymer is poly(2-{2-[2-(2-methacryloyloxyethoxy)ethoxy]ethoxy}ethyl 3,4,5-tris(p-dodecyloxybenzyloxy)benzoate) (abbreviated to 12-ABG-4EO-PMA); the monomeric precursor is the hydroxy-terminated side chain 2-{2-[2-(2-hydroxyethoxy)-ethoxy]ethoxy}ethyl 3,4,5-tris(p-dodecyloxybenzyloxy)benzoate (12-ABG-4EO-OH). The polymer and precursor both form ordered solid state structures that are converted to columnar hexagonal liquid crystalline (φ_h) phases at approximately 40°C and 50°C, respectively. The ordered solid state structures consist of ordered hexagonally packed cylindrical columns, in which the monomer units are probably packed with helical symmetry. For the polymer at 25°C, the column diameter is 60.4Å with an axial repeat of 5.03Å containing eight monomer units. For the precursor at 25°C, the column diameter is reduced to 53.5Å, probably due to the absence of the polymer backbone from the center of the column, and the axial repeat is doubled to 10.04Å. The X-ray data are compatible with a tighter winding of the monomers in a helical structure, but otherwise suggest that there are common features in the stacking of the aromatic groups in the two structures.     

Solvent‐Induced Helical Assembly and Reversible Chiroptical Switching of Chiral Cyclic‐Dipeptide‐Functionalized Naphthalenediimides

Understanding the roles of various parameters in orchestrating the preferential chiral molecular organization in supramolecular self‐assembly processes is of great significance in designing novel molecular functional systems. Cyclic dipeptide (CDP) chiral auxiliary‐functionalized naphthalenediimides (NCDPs 1 – 6 ) have been prepared and their chiral self‐assembly properties have been investigated. Detailed photophysical and circular dichroism (CD) studies have unveiled the crucial role of the solvent in the chiral aggregation of these NCDPs. NCDPs 1 – 3 form supramolecular helical assemblies and exhibit remarkable chiroptical switching behaviour (M‐ to P‐type) depending on the solvent composition of HFIP and DMSO. The strong influence of solvent composition on the supramolecular chirality of NCDPs has been further corroborated by concentration and solid‐state thin‐film CD studies. The chiroptical switching between supramolecular aggregates of opposite helicity (M and P) has been found to be reversible, and can be achieved through cycles of solvent removal and redissolution in solvent mixtures of specific composition. The control molecular systems (NCDPs 4 – 6 ), with an achiral or D ‐isomer second amino acid in the CDP auxiliary, did not show chiral aggregation properties. The substantial roles of hydrogen bonding and π–π interactions in the assembly of the NCDPs have been validated through nuclear magnetic resonance (NMR), photophysical, and computational studies. Quantum chemical calculations at the ab initio, semiempirical, and density functional theory levels have been performed on model systems to understand the stabilities of the right (P‐) and left (M‐) handed helical supramolecular assemblies and the nature of the intermolecular interactions. This study emphasizes the role of CDP chiral auxiliaries on the solvent‐induced helical assembly and reversible chiroptical switching of naphthalenediimides.     

New types of multifunctional liquid crystalline photochromic copolymers for optical data recording and storage

A new family of multifunctional chiral‐photochromic liquid crystalline (LC) copolymers containing mesogenic, chiral and photoactive groups were synthesized. The new principles of photo‐regulation of the helical supramolecular structure and optical properties of the binary and ternary chiral‐photochromic LC polymers based on the change of helical twisting power of the chiral‐photochromic monomer units, the dual photochromism and photochemical spectral gap burning were developed. It was shown, that the introduction of small amount of low‐molar‐mass chiral‐photochromic dopants in chiral LC copolymers having different helix signs followed by light irradiation permits one to twist or untwist the helical supramolecular structure. The synthesized polymers are shown to be promising candidates for colour data recording and storage.     

Helical secondary structures and supramolecular tilted chirality in N-terminal aryl amino acids with diversified optical activities

Helix structures at atomic/molecular level have not been found in self-assembled peptide seque nce with less than three residues.As β-sheet supramolecular secondary structures have been discovered in solidstate amino acids,we here report the conjugation of simple N-terminal aryl protecting group could give rise to helical supramolecular secondary structures in solid-state,which determines the optical activities of the adjacent aryl groups.The carboxylic acid-involved asymmetric H-bonds in N-te rminal aryl amino acids induce the emergence of super-helical structures of amino acid residues and aryl groups.In most cases,supramolecular tilted chirality of aryl groups is opposite to that of amino acid sequences,of which handedness and helical pitch are determined by the H-bond modalities.Determining correlation between supramolecular tilted chirality of aryl segments and their chiroptical activities is firstly unveiled,which was verified by the computational results based on density functional theory.Most aryl amino acids self-assembled by nanoprecipitation method via crystallization induced self-assembly into rigid one-dimensional microstructures with ultra-high Young's modulus.This study reveals the generic existence of chiral supramolecular structure s in aggregated amino acid derivatives and gives an in-depth investigation into the structural-property relationships,which could guide the rational design and screening of chiroptical supramolecular materials.