2‐Methyl‐1,4,5‐triphenyl‐1H‐imidazole

In 2‐methyl‐1,4,5‐tri­phenyl‐1H‐imidazole, C₂₂H₁₈N₂, the three substituent phenyl groups are not delocalized with the imidazole moiety; the dihedral angles these phenyl groups form with the imidazole ring are in the range 25.90 (5)–63.49 (6)°.     

Conformational studies on substituted purines

CNDO/2 calculations are performed on 9-methyl-8-phenyl-6-thiopurine in order to determine the molecular equilibrium conformation. The two methyl hydrogens are found to be staggered to the ortho hydrogen on the phenyl ring, and the dihedral angle between the phenyl group and the purine system was found to be equal to 30°, in good agreement with experimental data. The results are discussed in relation to other conformational analyses performed with the CNDO/2 method.     

THE REACTION BETWEEN π-CYCLOPENTADIENYLDI-CARBONYLCOBALT AND PHENYLETHYNYLSILANE,AND AN X-RAY CRYSTALLOGRAPHIC INVESTIGATION OF ONE OF THE PRODUCTS, (π-CYCLOPENTADIENYL)-[trans-DIPHENYL-DI(TRIMETHYLSILYL)-CYCLOBUTADIENE]-COBALT

Abstract

This is a report of the broad range of reactions and products that occur in refluxing xylene when π-cyclopentadienylcobalt or (π-cyclopentadienyl)-dicarbonylcobalt react with either symmetric or unsymmetrical acetylenes, specially when one of the substituents of the acetylene is an aromatic moeity. Since these reactions produce a variety of products, several of which are cis- and trans- tetrasubstituted cyclobutadiene-cobalt isomers, mnr and mass spectral methods were used to distinguish between them. In order to obtain an independent and indisputable structure assignment for the structural isomers investigated by spectral techniques, the crystal structure of the title compound was investigated by x-ray crystallographic techniques. The compound crystallizes in space group Pbca with the following cell dimensions: a = 29.622(7), b = 9.967(2) and c = 17.140(3) Å; V = 5060.46 ų; D(exp) = 1.23(2) gm-cm^?3, D(calc) = 1.24 gm-cm^?3 for Z = 8 molecules/unit cell. The intensity data were collected with MoKα radiation (Λ = 0.71069 Å) using a computer-controlled diffractometer equipped with a graphite monochromator. In all 6331 reflections were collected of which 3173 were independent and had F ₀ ² ± 3[sgrave] (F ₀ ²). The data were corrected for absorption and the transmission coefficients ranged from 0.72 to 0.79. The (π-cyclopentadienyl) ring is planar and has normal Co–C and C–C distances which average 2.049(7) and 1.389(17) Å, respectively. The Co–(Cp ring centroid) distance is 1.67 Å and the ring librates about this axis to a small degree which is not, however, large enough to affect the C–C distances. The average value of the C–C–C angle in the π-cyclopentadienyl ring is 108° indicating that it is planar and, in fact, the largest deviation of any carbon from the least-squares plane is 0.006 Å. In the Co-cyclobutadiene moiety, the Co–C and C–C distances are 1.982(15) and 1.467(3) Å and the Co–(cyclobutadiene ring centroid) distance is 1.69 Å. The angle between the normals of the five- and four-membered rings is 1.6°. The phenyl rings and trimethylsilyl fragments have normal distances and angles and the phenyl rings are planar. The two silicon and two carbon atoms of the phenyl rings linked to the π-cyclobutadiene moeity are out of the mean plane of the ring and bend away from the Co atom.

Finally, and most important, the four-membered ring is planar (the largest deviation from planarity is 0.003 Å) and the four C–C distances are the same length; however, the internal angles are not 90.0°. Instead, the two angles at carbons bonded to phenyl rings have values of 88.1(2)° and 88.4(2)° while those at carbon atoms bonded by silicons have values of 91.6(2)° and 91.8(2)°. The final discrepancy indices for this structural analysis were R ₁ = 0.038 and R ₂(F) = 0.044.     

2D HETCOR NMR Spectrum and Structure of Dicarbonyl(η5‐N,N‐dimethylcarbamoylcyclopentadienyl)nitrosylchromium [η5‐C5H4CON(CH3)2)]Cr(CO)2(NO)

Dicarbonyl(η⁵‐N,N‐dimethylcarbamoylcyclopentadienyl)nitrosylchromium ( 5 ) was prepared by the reaction of the corresponding acid chloride with dimethylamine. The structure of 5 has been determined by X‐ray diffraction studies: space group, P‐1; monoclinic; a=6.406(7), b=8.805(8), c=10.710(10) Å, α=91.73(8), β=93.67(8), γ=101.96(8)°; Z=2. The exocyclic carbon is bent away from the chromium atom with a θ angle of ?0.27°. The nitrosyl group is cisoid to the exocyclic carbonyl carbon of the Cp(Cr) ring with a twist angle of 63.27°. The chemical shifts of C(2,5) and C(3,4) on the Cp ring has been assigned using two‐dimensional HETCOR NMR spectroscopy.     

1,4‐Bis(2‐benzimidazolyl)­benzene

The title compound, C₂₀H₁₄N₄, lies about an inversion centre and the benz­imidazole moiety and the phenyl ring are twisted by 30.9 (1)°. The benz­imidazole moiety is completely planar, with a maximum deviation of 0.009 (2) Å. Intermolecular N—­H?N hydrogen bonds give rise to a layered structure, with the layers stacked by van der Waals interactions.     

Single crystal structure of 3-(2-(3-acetylphenyl)hydrazono)pentane-2,4-dione and molecular docking study with CYP450 members for anticancer molecular screening

Coupling of acetyl acetone with diazotized 3-aminoacetophenone was carried out to give the compound 3. The compound was characterized by IR, ¹HNMR, MS and elemental analysis. The X-ray analysis of 3 revels its planar nature with torsion angles between phenyl ring and acetyl group C2–C3–C7–O1 and C2–C3–C7–C8 of 177.8(3)° and ?0.9(4)°, respectively. Small deviations from planarity are evident also by torsion angles N1–N2–C9–C10 and N2–C9–C12–O3 of 176.6(2)° and 2.9(4)°, while the N2–C9–C10–O2 torsion angle with the value of ?165.2(3)° deviates from planarity. Hydrogen-bonded chain formed through C5–H5?O2 is connected with the adjacent antiparallel chain through C11–H11B···π interaction between the methyl group of the acetyl substituent and phenyl ring forming a double-layered chain. N1–N2 shows presence of single bond, showing it to be a hydrazone. Molecular docking study of the title compound with six members from CYP450 family shows encouraging activity.     

3,4,6‐Tri‐O‐acetyl‐1,2‐O‐[1‐(exo‐ethoxy)ethylidene]‐β‐d‐mannopyranose 0.11‐hydrate

The title compound, C₁₆H₂₄O₁₀·0.11H₂O, is a key intermediate in the synthesis of 2‐deoxy‐2‐[¹⁸F]fluoro‐d ‐glucose (¹⁸F‐FDG), which is the most widely used molecular‐imaging probe for positron emission tomography (PET). The crystal structure has two independent molecules (A and B) in the asymmetric unit, with closely comparable geometries. The pyranose ring adopts a ⁴C₁ conformation [Cremer–Pople puckering parameters: Q = 0.553 (2) Å, θ = 16.2 (2)° and ϕ = 290.4 (8)° for molecule A, and Q = 0.529 (2) Å, θ =15.3 (3)° and ϕ = 268.2 (9)° for molecule B], and the dioxolane ring adopts an envelope conformation. The chiral centre in the dioxolane ring, introduced during the synthesis of the compound, has an R configuration, with the ethoxy group exo to the mannopyranose ring. The asymmetric unit also contains one water molecule with a refined site‐occupancy factor of 0.222 (8), which bridges between molecules A and B via O—H...O hydrogen bonds.     

Acyl- und Alkylidenphosphane. XIX. Molekül- und Kristallstruktur des 2,4-Bis(dimethylamino)-1,3-diphenyl-1,3-diphosphetans

Acyl and Alkylidenephosphines. XlX. Molecular and Crystal Structure of 2,4-Bis (dimethyl-amino) ?1,3-diphenyl-l, 3-diphosphetane 2,4-Bis(dimethylamino)-1,3-diphenyl-1,3-diphosphetane 2a which is isolated as a byproduct in the synthesis of (E)-(dimethylamino)methylidene-phenylphosphine 1a crystallizes in the monoclinic space group P2₁/c. The dimensions of the unit cell determined at ?65 ± 5°C are: a = 1 004(1); b = 1 018(3); c = 1 873(2) pm; β = 105.15(8)°; Z = 4. As it is shown by a low temperature X-ray structure determination (R_g = 3.5%) the phenyl groups are placed above and the dimethylamino groups below the folded 1,3-diphosphetane ring; the molecule with its differently twisted substituents, however, deviates considerably from point symmetry mm2. The dihedral angle between the P1? C1n? P2 planes (n = 1 or 2) is found to be 153°. The relatively long Pn? C1n bond distances (187 to 191 pm) indicate a strained ring system; in solution 2a decomposes to some extent and forms monomeric 1a again. Further characteristic average bond distances and angles are: Pn? C4n (phenyl) 184; C? N 146 pm; P1? C1n? P2 93°; C11? Pn? C12 84° and Pn? C1n? Nn 116°.     

Binding position of azathioprine with bovine serum albumin determined by measuring nuclear magnetic resonance relaxation time.

The interaction between azathioprine (AZ) and bovine serum albumin (BSA) is mainly due to hydrophobic binding according to the dependence of the binding constant on the ionic strength obtained by equilibrium dialysis. The binding constant and partition coefficient of AZ were smaller than those of warfarin, phenylbutazone and ibuprofen. Little variation in the proton chemical shift of AZ was observed whether there was an absence or presence of BSA (7.25 x 10(-5) M). The spin-lattice relaxation time (T1) of AZ decreased in the presence of BSA to 6-22%. The spin-spin relaxation rate (1/T2) of AZ increased 16-24 times for the methyl group and the imidazole ring and 8-13 times for the purine ring in the presence of BSA. The ratio of the spin-spin relaxation rate of the free AZ to the bound AZ ((1/T2)b/(1/T2)f) of the methyl group and the imidazole ring was 2-3 times larger than that of the purine ring. The binding of AZ to BSA was concluded to be mainly at the methyl group on the imidazole ring of AZ.     

Dynamic mechanical properties of poly-α-olefins containing ring structures in side chains

Dynamic loss modulus curves have been determined over a temperature range beginning at liquid nitrogen temperature for poly-α-olefin polymers containing various ring structures, i.e., phenyl, cyclohexyl, cyclopentyl, and naphthyl, in the side chain. Glass transition and appropriate secondary relaxation temperatures were observed for each polymer. Separation of each pendant ring structure from the main backbone chain by successive additions of methylene units results in lower glass-transition temperatures. Comparison of polymers with similar side chains and different ring structures shows that the respective glass-transition temperatures decrease in the order naphthyl > cyclohexyl > phenyl > cyclopentyl. Secondary relaxation peaks were obtained at about ?150°C for polymers containing the cyclohexyl and cyclopentyl rings. A similar peak was observed for the polymer possessing a phenyl ring separated from the main chain backbone by two methylene units. The comparable polymer containing the naphthyl ring structure exhibited a broad secondary relaxation peak centered at ?20°C. The polymers possessing cyclohexyl rings separated from the main chain backbone by one or two methylene units had an additional low temperature peak at ?80°C. The molecular mechanism associated with this relaxation may be related to intramolecular transformations of the cyclohexyl ring between its “chair–chair” conformations.     

4‐Chloro­aceto­phenone [1‐(4‐methoxyphenyl)­ethyl­idene]­hydra­zone

The crystal structure of the title mixed azine, C₁₇H₁₇ClN₂O, contains four independent mol­ecules, A–D, and mol­ecule B is disordered. All four mol­ecules have an N—N gauche conformation, with C—N—N—C torsion angles of 136.5 (4), 137.0 (4), ?134.7 (4) and ?134.7 (4)°, respectively. The phenyl rings are also somewhat twisted with respect to the plane defined by C_ipso and the imine bond. On average, the combined effect of these twists results in an angle of 64.7° between the best planes of the two phenyl rings. Arene–arene double T‐contacts are the dominant intermolecular inter­action. The methoxy‐substituted phenyl ring of one azine mol­ecule interacts to form a T‐contact with the methoxy‐substituted phenyl ring of an adjacent mol­ecule and, similarly, two chloro‐substituted phenyl rings of neighboring mol­ecules interact to form another T‐contact. The only exception is for mol­ecule B, for which the disorder leads to the formation of T‐­contacts between methoxy‐ and chloro‐substituted phenyl rings. The prevailing structural motif of T‐contact formation between like‐substituted arene rings results in a highly dipole‐parallel‐aligned crystal structure.     

The molecular structure of cis- and trans-bicyclo [4.2.0]-octane in the gas phase as studied by electron diffraction and molecular mechanics

The molecular structure of Cis- and trans-bicyclo[4.2.0]octane in the gas phase was studied. Molecular mechanics calculations applying Boyd's force Held were used for constraining differences between structural parameters during least squares analysis and for calculating vibrational amplitudes. The cyclohexane ring was found to have a distorted chair conformation, the ring in the cis isomer being flattened along the junction and more twisted in the other part. For the trans compound the reverse is true. The following structural parameters were obtained (r_a-structure):cis: r(C-C)_av. = 1.535 Å. Cyclohexane ring: average bond angle 112.9°; average torsional angle 48°. Cyclobutane ring: average bond angle 88.9°; puckering 157°. The dihedral angle between the bisecting planes of the C(2)-C(1)-C(6)-C(5) and C(8)-C(1)-C(6)-C(7) torsional angles, is 119° - the “connection angle” of the two rings.trans: r(C-C)_av.= 1.532 Å. Cyclohexane ring: average bond angle 110.4° ; average torsional angle 57°. Cyclobutane ring: average bond angle 87.3°; puckering 145°. The “connection angle” is 180° (C₂ symmetry).Comparison is made with structures of related compounds.     

Estimation of the conformation of 2-hydroxy-4,6-dimethylbenzophenone and 2,4,6-trimethoxybenzophenone from electronic absorption spectra and PPP LCI ca

The twisting effect of benzene rings on the electronic spectra of derivatives of benzophenone (BPh), 2-hydroxy-4,6-dimethylbenzophenone (2-OH-4,6-diCH₃BPh) and 2,4,6-trimethoxybenzophenone (2,4,6-triOCH₃BPh) has been interpreted by the PPP method. The effect of structure, protonation, ionization and interaction with proton-acceptor solvent on the twisting of aromatic rings is discussed. The following twist angles of substituted ring (θ_I) and unsubstituted ring (θ_II) in 2-OH-4,6-diCH₃BPh were found: neutral form in cyclohexane θ_I = 39°–48°, θ_II = ?30°–(?45°); neutral form in ethanol θ_I = 66°–72°, θ_II = ?30°–0°; protonized form θ_I = 64°–6°, θ_II = ?30°–0°; ionized form θ_I = 66°–74°, θ_II = ?30°–0°. In the neutral form of 2,4,6-triOCH₃PBh the substituted ring is twisted by angle θ_I ~ 70° while in the protonated form the unsubstituted ring is twisted by angle θ_II ~ 60° and the substituted one is coplanar with the CO group.     

Bis­[3‐(o‐methoxy­phenyl)‐1‐methyl­triazene 1‐oxidato‐O,N3,O′]­zinc(II)

In the title compound, [Zn(C₈H₁₀N₃O₂)₂], the Zn atom displays a highly distorted octahedral coordination involving O and N atoms of two bidentate planar ligands approximately orthogonal to each other; the dihedral angle between the ligand planes is 84.95 (4)°. The ligand mol­ecules show great asymmetry in their bonding to the Zn²⁺ ion, with Zn—O bond distances ranging between 2.056 (2) and 2.534 (2) Å. The planar phenyl ring and the trigonal–planar geometry about the triazene N atom bonded to the phenyl ring suggest a resonance interaction extending over adjacent atoms.     

Ethyl β‐{2‐[4‐(dimethylamino)phenyliminomethyl]‐1‐(phenylsulfonyl)indol‐3‐yl}acrylate

The title compound, C₂₈H₂₇N₃O₄S, crystallizes in the centrosymmetric space group P2₁/n, with one mol­ecule in the asymmetric unit. In the indole ring, the dihedral angle between the fused rings is 3.6 (1)°. The phenyl ring of the sulfonyl substituent makes a dihedral angle of 79.2 (1)° with the best plane of the indole moiety. The phenyl ring of the di­methyl­amino­phenyl group is orthogonal to the phenyl ring of the phenyl­sulfonyl group. The dihedral angle formed by the weighted least‐squares planes through the pyrrole ring and the phenyl ring of the di­methyl­amino­phenyl group is 7.8 (1)°. The molecular structure is stabilized by C—H?O and C—H?N interactions.     

Microwave-assisted Syntheses and Crystal Structures of Benzimidazole Thiazolinone Derivatives

A rapid and efficient microwave-assisted synthesis method for the preparation of 3-(1H-benzo[d]imidazol-2-yl)-2-substituted phenyl thiazolidin-4-one (4a, 4b) was described. The structures of 4a and 4b were determined by elemental analyses, IR, 1H NMR and X-ray diffraction. In the crystals of compounds 4a and 4b, the imidazole ring and two benzene rings are planar. Interestingly, the dihedral angle between two benzene rings is 71.5° in 4a, while it is almost perpendicular in 4b due to the different benzene substituents. Meanwhile, the thiazolidinone ring is planar in 4a while slightly distorted with an r.m.s deviation of 0.1494(2) in 4b. The hydrogen bonding interactions observed link the molecules to form a dimeric unit, which may be effective in the stabilization of the structure.     

Chemistry of the phenoxathiins and isosterically related heterocycles. XVI. The synthesis and molecular structure of 3-azaphenoxathiin: Evidence in support of factors responsible for control of the dihedral angle

The synthesis of the 3-azaphenoxathiin ring system and its molecular structure are reported. Based on ¹³C-nmr chemical shift additivities associated with the insertion of an annular nitrogen atom and the observed ¹³C-nmr shift of Cα, the title compound was predicted to have a dihedral angle θ = 160.2°. The observed dihedral angle from the crystal structure was found to be θ = 167.07° which is in reasonably good agreement with the predicted value. It is proposed that the position of the annular nitrogen atom is solely in-control of the observed dihedral angle.     

Methyl 3‐(4‐methoxyphenyl)prop‐2‐enoate

The title mol­ecule, C₁₁H₁₂O₃, is almost planar, with an average deviation of the C and O atoms from the least‐squares plane of 0.146 (4) Å. The geometry about the C=C bond is trans. The phenyl ring and –COOCH₃ group are twisted with respect to the double bond by 9.3 (3) and 5.6 (5)°, respectively. The endocyclic angle at the junction of the propenoate group and the phenyl ring is decreased from 120° by 2.6 (2)°, whereas two neighbouring angles around the ring are increased by 2.3 (2) and 0.9 (2)°. This is probably associated with the charge‐transfer interaction of the phenyl ring and –COOCH₃ group through the C=C double bond. The mol­ecules are joined together through C—H?O hydrogen bonds between the methoxy and ester groups to form characteristic zigzag chains extended along the c axis.     

The crystal steueture of phenoxatellurine,C12H8OTe

The crystal structure of phenoxatellurine, C₁₂H₈OTe, was determined by X-ray diffracto-meter methods. The crystals are orthorhorhorhombic, P2₁ 2₁ 2₁, a = 6.036(1), b = 8.160(1), c = 20.717(5) Å at t = 22°. The positions of all atoms, including hydrogen, were found. The central ring is folded along the Te-O axis (138°). Average bond distances are Te-C = 2.098, C-O = 1.397, C-C = 1.382 Å. The phenyl rings are planar with a dihedral angle of 145°; C-Te-C = 89.4(3)°, C-O-C = 121.2(5)°. The structure is compared to those of phenoxathionine and pheuothiazine.     

THE CRYSTAL AND MOLECULAR STRUCTURE OF THE POTENTIAL ANTIBACTERIAL AGENT 2-PYRIDYL-PHENYL SULPHONE

Abstract

Crystals of 2-pyridyl-phenyl sulphone are monoclinic, space group P2₁/c, with eight molecules in the unit cell of dimensions a = 11.781, b = 5.903, c = 29.748 Å and B = 94.13°. The dihedral angles between the best planes of the two aromatic rings are significantly different in two crystallographically independent molecules (88.4° and 71.9° for molecule A and molecule B, respectively), as well as those between the CSC plane and the pyridine ring (59.4° and 67.4°) and between the CSC plane and the phenyl ring (51.7° and 81.8°). The average bond distances of interest include C?S 1.77(1) and S?O 1.44(1) Å; among the bond angles there are CSO = 108.1(7), CSC = 105.0(6) and OSO = 118.7(6)°. The packing of the molecule in the crystal is determined by the van der Waals interactions and by two intermolecular H?O contacts of 2.43 and 2.49 Å. The observed conformation in the solid state agrees well with results of previous investigations, in the solution state, by means of dipole moment method and theoretical M.O. calculations, for the analogous di-2-pyridyl sulphone.