51V NMR chemical shifts calculated from QM/MM models of vanadium chloroperoxidase

(51)V NMR chemical shifts calculated from QM/MM-optimized (QM=quantum mechanical; MM=molecular mechanical) models of vanadium-dependent chloroperoxidase (VCPO) are presented. An extensive number of protonation states for the vanadium cofactor (active site of the protein) and a number of probable positional isomers for each of the protonation states are considered. The size of the QM region is increased incrementally to observe the convergence behavior of the (51)V NMR chemical shifts. A total of 40 models are assessed by comparison to experimental solid-state (51)V NMR results recently reported in the literature. Isotropic chemical shifts are found to be a poor indicator of the protonation state; however, anisotropic chemical shifts and the nuclear quadrupole tensors appear to be sensitive to changes in the proton environment of the vanadium nuclei. This detailed investigation of the (51)V NMR chemical shifts computed from QM/MM models provides further evidence that the ground state is either a triply protonated (one axial water and one equatorial hydroxyl group) or a doubly protonated vanadate moiety in VCPO. Particular attention is given to the electrostatic and geometric effects of the protein environment. This is the first study to compute anisotropic NMR chemical shifts from QM/MM models of an active metalloprotein for direct comparison with solid-state MAS NMR data. This theoretical approach enhances the potential use of experimental solid-state NMR spectroscopy for the structural determination of metalloproteins.     

31P nuclear magnetic resonance titrations: Simultaneous evaluation of all pH-dependent resonance signals

The simultaneous evaluation of ali pH-dependent resonance signals (or multiplets) of an NMR titration offers a substantially increased accuracy and significance. The number of linearly independent titration equilibria is determined by graphical matrix rank analysis. The chemical shifts of all pH-dependent resonance lines are plotted against each other (chemical shift or CS diagrams) indicating whether a single or more titration equilibria are NMR spectrometrically observable and how far they overlap with each other. An iterative curve-fitting program allowing the simultaneous evaluation of all (pH) curves is available, from which pK values and chemical shifts of all species can be calculated. The starting pK values for the iteration need only be estimated very approximately (accuracy ±1–2 units). The titration end-points do not have to be experimentally accessible. The different methods for the simultaneous evaluation of all pH-dependent NMR signals are exemplified in the ³¹P NMR titration of thiamine pyrophosphate. In this case either the observed resonance lines (two doublets in a broad band proton decoupled spectrum) or the calculated chemical shifts for this AB system can be evaluated. A titration of sodium pyrophosphate was performed and evaluated for comparison.     

Effects of amino acid phi,psi propensities and secondary structure interactions in modulating H alpha chemical shifts in peptide and protein beta-sheet.

H alpha chemical shifts are often used as indicators of secondary structure formation in protein structural analysis and peptide folding studies. On the basis of NMR analysis of model beta-sheet and alpha-helical peptides, together with a statistical analysis of protein structures for which NMR data are available, we show that although the gross pattern of H alpha chemical shifts reflects backbone torsion angles, longer range effects from distant amino acids are the dominant factor determining experimental chemical shifts in beta-sheets of peptides and proteins. These show context-dependent variations that aid structural assignment and highlight anomalous shifts that may be of structural significance and provide insights into beta-sheet stability.     

Weak alignment of paramagnetic proteins warrants correction for residual CSA effects in measurements of pseudocontact shifts

Paramagnetic metal ions can induce molecular alignment with respect to the magnetic field. This alignment generates residual anisotropic chemical shifts (RACS) due to nonisotropic averaging over the molecular orientations. Using a 30 kDa protein-protein complex, the RACS effects are shown to be significant for heteronuclear spins with large chemical shift anisotropies, lanthanide ions with large anisotropic magnetic susceptibility tensors, and measurements at high magnetic field. Therefore, RACS must be taken into account when pseudocontact shifts are measured by comparison of chemical shifts observed between complexes with paramagnetic and diamagnetic lanthanide ions. The results are of particular importance when different pseudocontact shifts measured for the 1HN, 15N, and 13C' spins of a peptide group are used to restrain its orientation with respect to the electronic magnetic susceptibility tensor in structure calculations.     

Interpretation of conformational effects on 2-endo-norborneol by natural chemical shielding analysis

This paper represents an extension of our work on the (1)H and (13)C NMR chemical shifts of norbornane and 2-endo-norborneol. NCS-NBO analysis was employed to probe contributions of bond orbitals and orbitals of lone pairs to nuclear shielding in conformers of the alcohol generated by rotation of the C-O bond. Variations in (1)H and (13)C chemical shifts with the dihedral angle are discussed in terms of Lewis and non-Lewis partitioning and their respective importance is evaluated. In addition to hyperconjugation of the lone pair in a p orbital of oxygen that was previously reported, a sizable participation of the lone pair which is in an sp orbital is also observed and their combined effect dominates the carbon chemical shifts of the C(1)-C(2)-OH and C(3)-C(2)-OH fragments. Both lone pairs on oxygen also contribute to localized, though-space effects on nuclei in the vicinity, these effects answering for the largest deviations in hydrogen chemical shifts on rotation around the C-O bond. On the other hand, for conformers in which nonbonded repulsions lead to distortions in the molecular framework, variations in chemical shifts may be attributed to angular effects.     

On the alleged correlations between simple LCAO-MO reactivity indices and proton chemical shifts in planar,condensed, benzenoid hydrocarbons

Previous investigations into the proposed correlations between proton chemical shifts in conjugated hydrocarbons and the various LCAO-MO ‘reactivity indices’ (at the corresponding carbon atoms to which the peripheral protons are bonded), are here reassessed in the light of more-recently acquired experimental data, for the case of the planar, alternant, condensed, benzenoid hydrocarbons. A correlation coefficient of 0·73, statistically ‘significant’ at less than the ½% level, is obtained. Nevertheless, there are several unsatisfactory features of such proposed correlations (which are discussed), and, in the final analysis, no causative relation is expected between proton chemical shifts and reactivity indices in these molecules. Furthermore, the relative chemical shifts of the sterically unhindered protons in planar, alternant, benzenoid hydrocarbons can be accounted for by the ‘ring current’ effect alone, without the need to postulate a dependence of the proton chemical shifts on reactivity indices, which is in any case considered to be unlikely on physical grounds.     

Intrinsic carbon-13 NMR solvent shifts in hydrocarbons. Relevance of long range substituent parameters

Carbon-13 NMR chemical shifts have been measured in a number of binary mixtures of normal alkanes. Intrinsic solvent shifts are deduced from the shifts and the relevance of some small substituent effects in alkanes is discussed. A comparison is made between solvent effects and thermally induced chemical shift differences in alkanes.     

13C nuclear magnetic resonance studies of sesquiterpenes,anisatin and neoanisatin: The structure of anisatinic acid,a novel isomerization product of anisatin

¹³C NMR spectra are reported for derivatives of toxic sesquiterpenes, anisatin (I) and neoanisatin (II). Chemical shifts for each compound have been assigned on the basis of off-resonance decoupling experiments, known chemical shift rules, and comparison of the spectra among the compounds examined. Toxic anisatin (I) is known to isomerize under mild conditions to a non-toxic compound, anisatinic acid. The structure of anisatinic acid has been determined unambiguously to be IIIa by the ¹³C NMR spectral analysis of a derivative 8 of anisatinic acid. Some aspects of the substituent effects on the ¹³C chemical shifts obtained in the present investigation are described.     

Substituent effects in the 13C NMR chemical shifts of alpha-mono-substituted acetonitriles

13C chemical shifts empirical calculations, through a very simple additivity relationship, for the alpha-methylene carbon of some alpha-mono-substituted acetonitriles, Y-CH(2)-CN (Y=H, F, Cl, Br, I, OMe, OEt, SMe, SEt, NMe(2), NEt(2), Me and Et), lead to similar, or even better, results in comparison to the reported values obtained through Quantum Mechanics methods. The observed deviations, for some substituents, are very similar for both approaches. This divergence between experimental and calculated, either empirically or theoretically, values are smaller than for the corresponding acetones, amides, acetic acids and methyl esters, which had been named non-additivity effects (or intramolecular interaction chemical shifts, ICS) and attributed to some orbital interactions. Here, these orbital interactions do not seem to be the main reason for the non-additivity effects in the empirical calculations, which must be due solely to the magnetic anisotropy of the heavy atom present in the substituent. These deviations, which were also observed in the theoretical calculations, were attributed in that case to the non-inclusion of relativistic effects and spin-orbit coupling in the Hamiltonian. Some divergence is also observed for the cyano carbon chemical shifts, probably due to the same reasons.     

H-N HMBC as a valuable tool for the identification and characterization of nitrones

¹H-¹⁵N HMBC has been evaluated as an efficient and high-speed method to determine ¹⁵N chemical shifts for nitrones, which can be used to identify aromatic nitrones and to extract structural information by comparison with reference data. Substituent effects have been measured on C and N aryl groups separately, showing up the influence of electronic effects on C-aryl groups rather than N-aryl groups on the ¹⁵N chemical shifts. Steric effects are remarkable in the case of C-aryl-N-alkyl nitrones. Depending on N or C substitution, chemical shift changes in such an additive way that it is possible to predict chemical shifts for unknown nitrones.     

Direct assignment of the relative configuration in acyclic 1,3-diols by 1H NMR spectroscopy

[chemical reaction: see text]. Using an operationally simple deuterium isotopic perturbation method, the relative configuration of 1,3-diols can be determined directly using 1H NMR spectroscopy. A comparison of the OH chemical shifts for OH/OH and OH/OD isotopomers provides a reliable assessment of the relative configuration of the diol; anti-1,3-diols within polyacetate and polypropionate frameworks have upfield isotope shifts of 2-16 ppb, whereas syn-1,3-diols show upfield isotope shifts of 20-33 ppb.     

NMR spectroscopic study of noble gas binding into the engineered cavity of HPr(I14A) from Staphylococcus carnosus

Xenon binding into preexisting cavities in proteins is a well-known phenomenon. Here we investigate the interaction of helium, neon, and argon with hydrophobic cavities in proteins by NMR spectroscopy. 1H and 15N chemical shifts of the I14A mutant of the histidine-containing phosphocarrier protein (HPr(I14A)) from Staphylococcus carnosus are analyzed by chemical shift mapping. Total noble gas induced chemical shifts, Delta, are calculated and compared with the corresponding values obtained using xenon as a probe atom. This comparison reveals that the same cavity is detected with both argon and xenon. Measurements using the smaller noble gases helium and neon as probe atoms do not result in comparable effects. The dependence of amide proton and nitrogen chemical shifts on the argon concentration is investigated in the range from 10 mM up to 158 mM. The average dissociation constant for argon binding into the engineered cavity is determined to be about 90 mM.     

Conformation and configuration of tertiary amines via GIAO-derived (13)C NMR chemical shifts and a multiple independent variable regression analysis.

The (13)C chemical shifts of six tertiary amines of unambiguous conformational structure are compared to predicted (13)C NMR chemical shifts obtained via empirically scaled GIAO shieldings for geometries from MM3 molecular mechanics calculations. An average deviation, absolute value of Deltadelta(av), of 0.8 ppm and a maximum deviation, absolute value of Deltadelta(max), of 2.8 ppm between predicted and experimental (13)C shifts of the six tertiary amines of unambiguous structure are found. In several cases of tertiary amines subject to rapid exchange, where experimental (13)C shifts at room temperature are weighted averages of multiple conformers, a comparison of calculated (13)C shifts of all reasonable MM3 predicted conformers with experimental (13)C shifts via a multiple independent variable regression analysis provides an efficient method of determining the major and minor conformers. The examples presented are 2-methyl-2-azabicyclo[2.2.1]heptane and 1,6-diazabicyclo[4.3.1]decane, which each have two expected contributing structures, and 2-(diethylamino)propane and 1,8-diazabicyclo[6.3.1]dodecane, where ten and seven low-energy conformers, respectively, are predicted by MM3 calculations.     

The NMR spectra of the carbanions of xanthene and thioxanthene. Evidence for paratropism

The proton NMR spectra of the carbanions of xanthene [XH]^? and thioxanthene [TxH]^? have been recorded and interpreted. Paratropism in the central rings of [XH]^? and [TxH]^? is inferred from a comparison of the chemical shifts with those of the carbanion of 9,10-dihydroanthracene [AH]^?. The contributions to the chemical shifts arising from n-electron excess charges, local dipoles and magnetic anisotropies are discussed. Numerical values for the various ring currents have been estimated by a least squares analysis of the observed chemical shifts after applying corrections for the excess charge effect. The results point to a strongly increasing paramagnetic ring current in the central ring in the order [AH]^?, [TxH]^?, [XH]^?.     

Theoretical and experimental 15N NMR study of enamine–imine tautomerism of 4‐trifluoromethyl[b]benzo‐1,4‐diazepine system

The tautomeric structure of 4‐trifluoromethyl[b]benzo‐1,4‐diazepine system in solution has been evaluated by means of the calculation of ¹⁵N NMR chemical shifts of individual tautomers in comparison with the averaged experimental shifts to show that the enamine–imine equilibrium is entirely shifted toward the imine form. The adequacy of the theoretical level used for the computation of ¹⁵N NMR chemical shifts in this case has been verified based on the benchmark calculations in the series of the push–pull and captodative enamines together with related azomethynes, which demonstrated a good to excellent agreement with experiment. Copyright © 2015 John Wiley & Sons, Ltd.     

Carbon-13 nuclear magnetic resonance spectra of some methyl and phenyl substituted 2H-azirines

Carbon-13 n.m.r. spectra have been obtained for some methyl and phenyl substituted 2H-azirines. The higher field resonance of C-2 than that of the corresponding aziridine carbon is interpreted in terms of ring strain. Substituent effects on the chemical shifts of the azirine ring carbons are discussed. A set of additivity parameters for the methyl and phenyl groups are obtained which can be used for the calculation of the chemical shifts of the azirine ring carbons. The substituent effect of an azirine ring on the chemical shift of benzene is also discussed in comparison with those of some other substituents. A high degree of s character (48.5%) in the exocyclic orbital of C-3 is indicated by a large J(¹³C-3,H) value (242.5 Hz).     

Relations between 77Se NMR chemical shifts of (phenylseleno)-benzenes and their molecular structures derived from nine X-ray crystal structures

An extensive library of 77Se chemical shifts have been generated from the NMR measurements on substituted (phenylseleno)benzenes, including 33 new compounds. The variation in chemical shifts cover 265 ppm ranging from 446 to 181 ppm. Crystal structures have been determined for nine selected representatives of the substituted (phenylseleno)-benzenes. The analysis of the crystal structures supported that through-space interactions between selenium and the ortho-substituent observed in the crystal structures also are likely to be present in solution. The variation in the 77Se NMR chemical shifts can be rationalised from the intramolecular interactions with the substituent in the ortho-position. Furthermore it appears that these ortho-effects are roughly additive, and that it is the actual interactions and not the resulting conformational constraints that are responsible for the variations in the 77Se NMR chemical shifts.