Thermo-Raman spectroscopic study of the natural layered double hydroxide manasseite

Raman and thermo-Raman spectroscopy have been applied to study the natural hydrotalcite manasseite Mg(6)Al(2)(OH)(16)(CO(3)).4H(2)O. Hydrogen bond distances calculated using a Libowitzky-type empirical function varied between 2.61 and 3.00A. Stronger hydrogen bonds were formed by water units as compared to the hydroxyl units. Thermo-Raman spectroscopy enabled the identification of bands attributed to the hydroxyl units. Two Raman bands at 1062 and 1058 cm(-1) are assigned to symmetric stretching modes of the carbonate anion. Thermal treatment shifts these bands to higher wavenumbers indicating a change in the carbonate bonding.     

IR plus vacuum ultraviolet spectroscopy of neutral and ionic organic acid monomers and clusters: propanoic acid

The vibrational spectrum of molecular propanoic acid, cooled in a supersonic expansion, in the region of 2500 to 7500 cm(-1) is obtained employing infrared plus vacuum ultraviolet nonresonant ionization detected spectroscopy. The fundamental and first overtone of the CH and OH stretch modes of cold propanoic acid molecules can be identified in the spectrum. Propanoic acid neutral and ionic clusters are also studied employing nonresonant ion dip and photodissociation spectroscopic techniques, respectively. For the neutral dimer, a sequence of features observed at ca. 2500-2700 cm(-1) can be assigned as combination bands of low frequency modes with the COH bending overtone; these features characterize the cyclic dimer ring structure. IR spectra of the larger neutral clusters n=3, 4, 5 indicate that they also have cyclic structures in which the OH groups are engaged in the cluster hydrogen bonding network. The CH groups are not involved in this hydrogen bonding structure. Free OH features are observed for the protonated ion clusters (C(2)H(5)COOH)(n)H(+), n=1,...,5, indicating that at least one OH group of these cluster ions is not involved in the cluster hydrogen bonding network. A comparison of the results for four hydrogen bonding neutral and ionic clusters (CH(3)OH, C(2)H(5)OH, CH(3)COOH, and C(2)H(5)COOH) is presented and discussed.     

Vibrational spectroscopy of selected minerals of the rosasite group

Minerals in the rosasite group namely rosasite, glaucosphaerite, kolwezite, mcguinnessite have been studied by a combination of infrared and Raman spectroscopy. The spectral patterns for the minerals rosasite, glaucosphaerite, kolwezite and mcguinnessite are similar to that of malachite implying the molecular structure is similar to malachite. A comparison is made with the spectrum of malachite. The rosasite mineral group is characterised by two OH stretching vibrations at approximately 3401 and 3311 cm-1. Two intense bands observed at approximately 1096 and 1046 cm-1 are assigned to nu1(CO3)2- symmetric stretching vibration and the delta OH deformation mode. Multiple bands are found in the 800-900 and 650-750 cm-1 regions attributed to the nu2 and nu4 bending modes confirming the symmetry reduction of the carbonate anion in the rosasite mineral group as C2v or Cs. A band at approximately 560 cm-1 is assigned to a CuO stretching mode.     

A study of cysteamine ionization in solution by Raman spectroscopy and theoretical modeling

Different cysteamine (H2N-CH2-CH2-SH) ionization forms have been studied by polarized Raman spectroscopy in solutions prepared with H2O and D2O and by DFT calculations at the B3LYP/6-31++G(d,p) level. To account for solvation effects, we employed the integral equation formalism polarizable continuum model (IEFPCM) option and explicit water molecules. Calculated relative energies and Raman spectra revealed that gauche rotamers around the C-C bond are the most stable conformers in solution. The experimental pKa values and Raman spectra of various ionization forms were best predicted by using a model with three explicit water molecules and the IEFPCM option. In general, the use of IEFPCM tends to lower the calculated frequencies for a few bands, but in some cases (S-H stretching mode) this effect is expressed very strongly. Potential energy distribution (PED) analysis of gauche conformers of various cysteamine ionization forms provided the possibility of discriminating spectroscopically methylene groups adjacent to sulfur, (CH2)S, and nitrogen, (CH2)N, sites. In general, stretching and scissoring modes as well as wagging and twisting vibrations of the (CH2)N group were found to be at higher frequencies. The influence of ionization of SH and NH2 groups on the vibrational spectrum is discussed, and Raman markers for further amine group ionization studies are suggested.     

Vibrational spectroscopic study of the nitrate containing hydrotalcite mbobomkulite

Raman spectroscopy has been used to study the nitrate hydrotalcite mbobomkulite NiAl2(OH)16(NO3).4H2O. Mbobomkulite along with hydrombobomkulite and sveite are known as 'cave' minerals as these hydrotalcites are only found in caves. Two types of nitrate anion are observed using Raman spectroscopy namely free or non-hydrogen bonded nitrate and nitrate hydrogen bonded to the interlayer water and to the 'brucite-like' hydroxyl surface. Two bands are observed in the Raman spectrum of Ni-mbobomkulite at 3576 and 3647 cm(-1) with an intensity ratio of 3.36/7.37 and are attributed to the Ni3OH and Al3OH stretching vibrations. The observation of multiple water stretching vibrations implies that there are different types of water present in the hydrotalcite structure. Such types of water would result from different hydrogen bond structures.     

A Raman and infrared spectroscopic study of the uranyl silicates--weeksite, soddyite and haiweeite

Raman spectroscopy has been used to study the molecular structure of a series of selected uranyl silicate minerals, including weeksite K2[(UO2)2(Si5O13)].H2O, soddyite [(UO2)2SiO4.2H2O] and haiweeite Ca[(UO2)2(Si5O12(OH)2](H2O)3 with UO2(2+)/SiO2 molar ratio 2:1 or 2:5. Raman spectra clearly show well resolved bands in the 750-800 cm-1 region and in the 950-1000 cm-1 region assigned to the nu1 modes of the (UO2)2+ units and to the (SiO4)4- tetrahedra. For example, soddyite is characterized by Raman bands at 828.0, 808.6 and 801.8 cm-1 (UO2)2+ (nu1), 909.6 and 898.0 cm-1 (UO2)2+ (nu3), 268.2, 257.8 and 246.9 cm-1 are assigned to the nu2 (delta) (UO2)2+. Coincidences of the nu1 (UO2)2+ and the nu1 (SiO4)4- is expected. Bands at 1082.2, 1071.2, 1036.3, 995.1 and 966.3 cm-1 are attributed to the nu3 (SiO4)4-. Sets of Raman bands in the 200-300 cm-1 region are assigned to nu2 (delta) (UO2)2+ and UO ligand vibrations. Multiple bands indicate the non-equivalence of the UO bonds and the lifting of the degeneracy of nu2 (delta) (UO2)2+ vibrations. The (SiO4)4- tetrahedral are characterized by bands in the 470-550 cm-1 and in the 390-420 cm-1 region. These bands are attributed to the nu4 and nu2 (SiO4)4- bending modes. The minerals show characteristic OH stretching bands in the 2900-3500 cm-1 and 3600-3700 cm-1.     

Anomeric effects in the symmetrical and asymmetrical structures of triethylamine. Blue-shifts of the C-h stretching vibrations in complexed and protonated triethylamine

Quantum mechanical calculations using density functional theory with the hybrid B3LYP functional and the 6-31++G(d,p) basis set are performed on isolated triethylamine (TEA), its hydrogen-bond complex with phenol, and protonated TEA. The calculations include the optimized geometries and the results of a natural bond orbital (NBO) analysis (occupation of sigma* orbitals, hyperconjugative energies, and atomic charges). The harmonic frequencies of the C-H stretching vibrations of TEA are predicted at the same level of theory. Two stable structures are found for isolated TEA. In the most stable symmetrical structure (TEA-S), the three C-C bond lengths are equal and one of the C-H bond of each of the three CH2 groups is more elongated than the three other ones. In the asymmetrical structure (TEA-AS), one of the C-C bonds and two C-H bonds of two different CH2 groups are more elongated than the other ones. These structures result from the hyperconjugation of the N lone pair to the considered sigma*(C-H) orbitals (TEA-S) or to the sigma*(C-C) and sigma*(C-H) orbitals of the CH2 groups (TEA-AS). The formation of a OH...N hydrogen bond with phenol results in a decrease of the hyperconjugation, a contraction of the C-H bonds, and blue-shifts of 28-33 cm-1 (TEA-S) or 40-48 cm-1 (TEA-AS) of the nus(CH2) vibrations. The nu(CH3) vibrations are found to shift to a lesser extent. Cancellation of the lone pair reorganization in protonated TEA-S and TEA-AS results in large blue-shifts of the nu(CH2) vibrations, between 170 and 190 cm-1. Most importantly, in contrast with the blue-shifting hydrogen bonds involving C-H groups, the blue-shifts occurring at C-H groups not participating in hydrogen bond formation is mainly due to a reduction of the hyperconjugation and the resulting decrease in the occupation of the corresponding sigma*(C-H) orbitals. A linear correlation is established between the C-H distances and the occupation of the corresponding sigma*(C-H) orbitals in the CH2 groups.     

A Raman spectroscopic study of synthetic giniite

The mineral giniite has been synthesised and characterised by XRD, SEM and Raman and infrared spectroscopy. SEM images of the olive-green giniite display a very unusual image of pseudo-spheres with roughened surfaces of around 1-10microm in size. The face to face contact of the spheres suggests that the spheres are colloidal and carry a surface charge. Raman spectroscopy proves the (PO4)3- units are reduced in symmetry and in all probability more than one type of phosphate unit is found in the structure. Raman bands at 77K are observed at 3380 and 3186cm-1 with an additional sharp band at 3100cm-1. The first two bands are assigned to water stretching vibrations and the latter to an OH stretching band. Intense Raman bands observed at 396, 346 and 234cm-1are attributed to the FeO stretching vibrations. The giniite phosphate units are characterised by two Raman bands at 1023 and 948cm-1 assigned to symmetric stretching mode of the (PO4)3- units. A complex band is observed at 460.5cm-1 with additional components at 486.8 and 445.7cm-1 attributed to the nu(2) bending modes suggesting a reduction of symmetry of the (PO4)3- units.     

Interpretation of the CH stretching region of the vibrational spectra of cyclohexane

The reassignment of the CH stretching vibration fundamentals of cyclohexane is made by combination of experimental—i.r. and Raman spectroscopy—and theoretical—ab initio calculation—methods. The Raman active bands are determined experimentally by polarized measurements. The position and intensity of the i.r. active bands are obtained by deconvolution of the band envelopes of the vapour phase spectrum. The calculated frequencies and relative intensities are in very good agreement with the experimental values, thus confirming the feasibility of the reassignment.     

NIR spectroscopy of jarosites

Near-infrared (NIR) spectroscopy has been used to analyse a suite of synthesised jarosites of formula Mn(Fe3+)6(SO4)4(OH)12 where M is K, Na, Ag, Pb, NH4+ and H3O+. Whilst the spectra of the jarosites show a common pattern, differences in the spectra are observed which enable the minerals to be distinguished. The NIR bands in the 6300-7000 cm-1 region are attributed to the first fundamental overtone of the infrared and Raman hydroxyl stretching vibrations. The NIR spectrum of the ammonium-jarosite shows additional bands at 6460 and 6143 cm-1, attributed to the first fundamental overtones of NH stretching vibrations. A set of bands are observed in the 4700-5500 cm-1 region which are assigned to combination bands of the hydroxyl stretching and deformation vibrations. The ammonium-jarosite shows additional bands at 4730 and 4621 cm-1, attributed to the combination of NH stretching and bending vibrations. NIR spectroscopy has the ability to distinguish between the jarosite minerals even when the formula of the minerals is closely related. The NIR spectroscopic technique has great potential as a mineral exploratory tool on planets and in particular Mars.     

Synthesis, DTA, IR and Raman spectra of penthylenediammonium hexachlorostannate NH3(CH2)5NH3SnCl6.

The Raman and IR spectra of NH3(CH2)5NH3SnCl6 have been measured at ambient temperature. It is shown that the cations in the compound assume a symmetry lower than C2v. Combination bands observed in the 2100-1800 cm(-1) region in the IR spectrum of NH3(CH2)5NH3SnCl6 indicate that the compound contains the C-NH3 grouping, the bands are discussed and their assignment are suggested. No evidence of existence of hydrogen bonding is found from the infrared spectrum in the region of 2800-3200 cm(-1); anions and cations are found not connected by hydrogen bonding and are therfore isolated. The Raman spectrum of anions can be interpreted in terms of disordered groups, not clearly showing the predicted splitting of bands.     

三苯基氧膦钕盐配合物的振动光谱

本文测定了Ph_3PO、Nd(NCS)_3·4Ph_3PO、[Nd(ClO_4)_2·4Ph_3PO]~+ClO_4~-·2CH_3COCH_3以及Nd(NO_3)_3·2Ph_3PO·C_2H_5OH在4000～100 cm~(-1)区域内的FT-IR和激光Raman光谱,分析和讨论了各主要谱带的性质和配位结构.     

Spectra and integrated band intensities of the low order OH stretching overtones in peroxyformic acid: an atmospheric molecule with prototypical intramolecular hydrogen bonding

The gas phase spectra of several vibrational bands of peroxyformic acid (PFA), an atmospheric molecule exhibiting intramolecular hydrogen bonding, are presented. In the fundamental region, Fourier transform infrared (FT-IR) spectroscopy is used to probe the C-O, O-H and C-H stretching vibrations, while in the region of the first and second OH-stretching overtones (2ν(OH) and 3ν(OH)) photoacoustic spectroscopy is used. Integrated absorption cross sections for the PFA vibrational bands are determined by comparing their respective peak areas with that for the OH-stretching bands of n-propanol for which the absorption cross section is known. The measured integrated intensities of the OH stretching bands are then compared with a local mode model using a one-dimensional dipole moment function in conjunction with the OH stretching potential computed at both the MP2/aug-cc-pVDZ and CCSD(T)/aug-cc-pVDZ levels. The data allow us to investigate changes in the OH stretch band position and intensity as a function of overtone order arising from the influence of hydrogen bonding. Furthermore, calculations at the MP2/aug-cc-pVDZ level show that there are three stable conformers of PFA with relative energies of 0, 13.54, and 13.76 kJ/mol, respectively. In the room temperature spectra, however, we see evidence for transitions from only the lowest energy conformer. The geometrical parameters and vibrational frequencies of the most stable conformer are presented.     

Raman spectroscopy of newberyite Mg(PO3OH)·3H2O: a cave mineral

Newberyite Mg(PO3OH)·3H2O is a mineral found in caves such as from Moorba Cave, Jurien Bay, Western Australia, the Skipton Lava Tubes (SW of Ballarat, Victoria, Australia) and in the Petrogale Cave (Madura, Eucla, Western Australia). Because these minerals contain oxyanions, hydroxyl units and water, the minerals lend themselves to spectroscopic analysis. Raman spectroscopy can investigate the complex paragenetic relationships existing between a number of 'cave' minerals. The intense sharp band at 982 cm(-1) is assigned to the PO4(3-)ν1 symmetric stretching mode. Low intensity Raman bands at 1152, 1263 and 1277 cm(-1) are assigned to the PO4(3-)ν3 antisymmetric stretching vibrations. Raman bands at 497 and 552 cm(-1) are attributed to the PO4(3-)ν4 bending modes. An intense Raman band for newberyite at 398 cm(-1) with a shoulder band at 413 cm(-1) is assigned to the PO4(3-)ν2 bending modes. The values for the OH stretching vibrations provide hydrogen bond distances of 2.728 ? (3267 cm(-1)), 2.781 ? (3374 cm(-1)), 2.868 ? (3479 cm(-1)), and 2.918 ? (3515 cm(-1)). Such hydrogen bond distances are typical of secondary minerals. Estimates of the hydrogen-bond distances have been made from the position of the OH stretching vibrations and show a wide range in both strong and weak bonds.     

Contrast effect of hydrogen bonding on the acceptor and donor OH groups of intramolecularly hydrogen-bonded OH pairs in diols

We studied the influence of hydrogen bonding on the fundamental and overtone bands of the OH-stretching vibration of each OH group in the intramolecularly hydrogen-bonded OH(I)::OH(II) pair in 1,2-, 1,3- and 1,4-diols. The hydrogen bonding between the two OH groups significantly increases in strength from the five-membered ring of a 1,2-diol to the seven-membered ring of a 1,4-diol. Although the hydrogen bonding does not affect the vibrational property of the OH(II) (or acceptor), it significantly influences the OH(I) (or donor). As the hydrogen bonding becomes stronger from a 1,2- to a 1,4-diol, the fundamental band of the OH-stretching shifts downwards by from about 50 to 140 cm(-1), and the overtone band markedly decreases in intensity, although the effect on the intensity and bandwidth of the fundamental band varies among 1,2-, 1,3- and 1,4-diols. The quantum-mechanically calculated normal frequencies of the acceptor and donor OH groups in the hydrogen-bonded ring are in good agreement with the observed frequencies. The calculated interatomic distance between the O of an acceptor OH and the H of a donor OH is the shortest for a 1,4-diol, which is consistent with the largest frequency shift caused by the hydrogen bonding.     

Infrared plus vacuum ultraviolet spectroscopy of neutral and ionic methanol monomers and clusters: new experimental results

We present new observations of the infrared (IR) spectrum of neutral methanol and neutral and protonated methanol clusters employing IR plus vacuum ultraviolet (vuv) spectroscopic techniques. The tunable IR light covers the energy ranges of 2500-4500 cm(-1) and 5000-7500 cm(-1). The CH and OH fundamental stretch modes, the OH overtone mode, and combination bands are identified in the vibrational spectrum of supersonic expansion cooled methanol (2500-7500 cm(-1)). Cluster size selected IR plus vuv nonresonant infrared ion-dip infrared spectra of neutral methanol clusters, (CH(3)OH)(n) (n=2,[ellipsis (horizontal)],8), demonstrate that the methanol dimer has free and bonded OH stretch features, while clusters larger than the dimer display only hydrogen bonded OH stretch features. CH stretch mode spectra do not change with cluster size. These results suggest that all clusters larger than the dimer have a cyclic structure with OH groups involved in hydrogen bonding. CH groups are apparently not part of this cyclic binding network. Studies of protonated methanol cluster ions (CH(3)OH)(n)H(+) n=1,[ellipsis (horizontal)],7 are performed by size selected vuv plus IR photodissociation spectroscopy in the OH and CH stretch regions. Energies of the free and hydrogen bonded OH stretches exhibit blueshifts with increasing n, and these two modes converge to approximately 3670 and 3400 cm(-1) at cluster size n=7, respectively.     

Periodic ab initio approach for the cooperative effect of CH/pi interaction in crystals: relative energy of CH/pi and hydrogen-bonding interactions

The bonding property of the CH/pi interaction in organic crystals has been investigated by the means of a periodic ab initio method. The energy of the CH(sp(2))/pi interaction in crystals, estimated with periodic RHF/6-21G*, showed a reasonable attractive CH(sp(2))/pi interaction owing to a cooperative effect, whereas the results calculated with RHF/cc-pVDZ indicate a negligibly small or repulsive interaction. The relative contribution of the CH(sp(2))/pi interaction to the column packing energy was found to be roughly half of the energy of a conventional hydrogen bond. The calculation of the charge distributions on the aromatic rings participating in the CH(sp(2))/pi interaction in crystals revealed that the atoms were more ionic than those in the gas phase. These theoretical calculations suggest a hydrogen-bonding characteristic for the CH(sp(2))/pi interaction in crystals, which does not occur in solution nor gas phase. We present computational evidence of the existence of the cooperative effect of CH(sp(2))/pi interaction in crystals.     

Identification of the rosasite group minerals--an application of near infrared spectroscopy

The ability of near infrared reflectance spectroscopy to classify the rosasite group minerals from spectral characteristics is demonstrated. NIR spectroscopy can be regarded as an alternative tool for structure analysis. The spectra show that rosasite group minerals with different cations can be distinguished. Ni2+ in nullaginite [Ni2(CO3)(OH)2] is conspicuous through a single broad band absorption feature at 8525 cm-1, extended from 11,000 to 7000 cm-1. The effect of Ni on Cu is seen in the spectrum of glaukosphaerite [(Cu, Ni)2(CO3)(OH)2] both by a red shift of the spectrum and reduction in intensity of bands with variable positions of band maxima for Cu2+ at 6995 cm-1 and Ni2+ at 7865 cm-1. The spectrum of rosasite [(Cu, Zn)2(CO)3(OH)2] is characterised by Cu2+ band at 7535 cm-1. Kolwezite [(Cu, Co)2(CO)3(OH)2] is a spectral mixture of Cu and Co but optically separated by Co2+ and Cu2+ peaks at 8385 and 7520 cm-1. Vibrational spectra of carbonates show a number of bands in the 7000-4000 cm-1 region attributable to overtones, combination of OH stretching and deformation modes. They appear to be uniform in nature since the structure of rosasite group minerals is identical. The complexity of these features varies between samples because of the variation in composition and hence is useful for discriminating different hydrous carbonates.     

IRRAS studies on chain orientation in the monolayers of amino acid amphiphiles at the air-water interface depending on metal complex and hydrogen bond formation with the headgroups

Monolayers of N-octadecanoyl-L-alanine at the air-water interface on pure water and metal ion containing subphases have been studied using polarized infrared reflection-absorption spectroscopy (IRRAS). The metal complex and hydrogen bond formation with the headgroups give rise to a change in chain order depending on metal ion in the subphase. On pure water and Ag(+)-/Pb(2+)-containing subphase, the antisymmetric CH(2) stretching band intensity [nu(a)(CH(2))] undergoes a slower increase than the symmetric one [nu(s)(CH(2))] below the Brewster angle, so the intensity ratios of nu(a)(CH(2))/nu(s)(CH(2)) are less than 1 in the cases of Ag(+) and Pb(2+). Beyond the Brewster angle, the nu(a)(CH(2)) band intensities are substantially reduced in comparison with the nu(s)(CH(2)) ones in the cases of pure water and Ag(+), but the nu(a)(CH(2)) bands still remain negative-oriented in the presence of Pb(2+). These unusual spectral features indicate that the alkyl chains take a preferential orientation with their C-C-C planes parallel to the water surface. The parallel packing of the alkyl chains results from the intermolecular hydrogen bonds C=O...H-N between the neighboring amide groups, strengthened by the metal complex of covalent interaction. On the Ca(2+)-/Cu(2+)-containing subphase, the corresponding polarized spectra display a usual behavior. The alkyl chains are roughly estimated to be inclined around 35-40 degrees from the surface normal on the assumption of chain segment orientation for the monolayers in the liquid-expanded phase. The chain conformation and tilt are closely related to the formation of intramolecular hydrogen bonds and the ionic interaction of the metal complex in the cases of Ca(2+) and Cu(2+).     

New thermochemical parameter for describing solvent effects on IR stretching vibration frequencies. Communication 2. Assessment of cooperativity effects

Solvent effects on O-H stretching vibration frequency of methanol in hydrogen bond complexes with different bases, CH3OH...B, have been investigated by FTIR spectroscopy. Using chloroform as a solvent results in strengthening of CH3OH...B hydrogen bonding due to cooperativity between CH3OH...B and Cl3CH...CH3OH bonds. A method is proposed for quantifying the hydrogen bond cooperativity effect. The determined cooperativity factors take into account all specific interactions of the solute in proton-donor solvents. In addition, a method of estimation of cooperativity factors Ab and AOX in system (CH3OH)2...B is proposed. It is demonstrated that in such systems, the cooperativity factor of the OH...B bond decreases and that of the OH...O bond increases with increasing the acceptor strength of the base B. The obtained results are in a good agreement with the data obtained previously from matrix-isolation FTIR spectroscopy.