Trihydroxy-2-thiaquinolizidine derivatives as a new class of bicyclic glycosidase inhibitors

Trihydroxy-2-thiaquinolizidines, a new class of bicyclic dideoxy-iminohexitol glycosidase inhibitor derivatives with nominally the d-gluco, l-ido, d-manno and l-gulo configurations were synthesized. X-ray analyses indicated that the preferred conformation for d-gluco and d-manno derivatives was a flat trans-fused system. Unlike deoxynojirimycin, the compound with d-gluco configuration was selective for α-glucosidases (yeast and rice) and showed no inhibitory activity towards β-glucosidase (almond), α-galactosidase (green coffee beans), α-galactosidase (E. coli) and α-mannosidase (jack bean), while the l-ido derivative was specific for β-glucosidase (almond).     

Radial and longitudinal profiles of the electron paramagnetic resonance signal intensity of a single TE102 rectangular cavity: A three-dimensional surface plot for a point-like sample

Radial and longitudinal profiles of the electron paramagnetic resonance (EPR) signal intensity of a point-like sample inserted into a Bruker single TE₁₀₂ rectangular cavity were computed and the three-dimensional surface plots presented for the set of the point-like samples situated, (i) at any available points, P(ρ∈〈0, b/2〉, φ∈〈0, 2π〉, x=0), of a circle with a radius, ρ_max=b/2 (5.5 mm), which is located in the horizontal, central (y-z)-plane of the microwave cavity (a radial profile), and (ii) at any available points, P(ρ=b/4, φ∈〈0, 2π〉, x∈〈−a/2, a/2〉), of the cylindrical surface with a radius, ρ=b/4, and length, L=a (23.5 mm), which is concentric with the vertical, central x-axis of the microwave cavity (a longitudinal profile). The three-dimensional surface plots of the EPR signal intensity can be used for the theoretical prediction of the experimental response of the microwave cavity to a bulky sample: (i) for movement along (the longitudinal response); and (ii) for rotation around (the radial response) the vertical, central cavity x-axis.     

Identification of effective DNA barcodes for Triticum plants through chloroplast genome-wide analysis

The Egyptian flora is rich with a large number of Triticum plants, which are very difficult to discriminate between in the early developmental stages. This study assesses the significance of using two DNA Barcoding loci (matK and rbcL) in distinguishing between 18 different Triticum accessions in Egypt. We isolated and sequenced 15 rbcL and six matK fragments, but our analysis of the resultant sequences demonstrated a limited ability of matK and rbcL in distinguishing between Triticum accessions. Therefore, we pursued a bioinformatics approach to determine the most useful loci which may be used as DNA barcodes for the Triticum spp. We obtained the 10 available chloroplast genomes of the 10 Triticum species and sub-species from NCBI, and performed chloroplast genome-wide analysis to find the potential barcode loci. A total of 134 chloroplast genes, gene combinations, intergenic regions and intergenic region combinations were tested using a Tree-based method. We were unable to discriminate between Triticum species by using chloroplast genes, gene combinations and intergenic regions. However, a combination of the intergenic region (trnfM-trnT) with either (trnD-psbM), (petN-trnC), (matK-rps16) or (rbcL-psaI) demonstrated a very high discrimination capacity, suggesting their utilization as DNA barcodes for the Triticum plants. Furthermore, our novel DNA barcodes demonstrated high discrimination capacity for other Poaceae members.     

Chemistry and thermodynamics of the twin charge-ordering transitions in RBaFe2O5+w series

Thermal and volume parameters of the twin charge-ordering Verwey transitions in RBaFe₂O_5+w (R=a rare-earth element) are summarized as a function of R and w. Their determination is exemplified for case R = Dy, for which also synthesis conditions, phase relations, and refined crystal-structure data for the valence-mixed (Fe^2.5+) and charge-ordered (Fe²⁺ and Fe³⁺) phases are reported. Data for the R=Nd, Sm, Eu and Gd variants with wide ranges of oxygen non-stoichiometry suggest that increasing w decreases ΔS and the temperature of the transition in a manner that is similar to a behavior under increasing concentration of an ideal solution of RBaFe₂O₆ in RBaFe₂O₅. Thermal parameters of the transition for the ideal mixed-valence composition RBaFe₂O_5.000 are estimated from such compositional dependences, varying reasonably smoothly as a function of R (radius, electronegativity, polarizability). Parameter ΔV is the only one that follows the structural discontinuity between the charge-ordered R = Nd and variants with smaller trivalent R ions. The ordering of the d_xz orbitals of the Fe²⁺ ions is thus being achieved at a cost of lowering the symmetry when the R size becomes unfavorably large. A definition of the Verwey transition as a first-order orbital ordering of a valence-mixed phase is suggested.     

Calculation of pVT and vapor–liquid equilibria of copolymer systems based on an equation of state

A molecular thermodynamic model for copolymers and their mixtures has been established by adopting the hard-sphere-chain fluid as a reference and a square-well (SW) term as well as an association term as a perturbation. The latter is introduced to consider various associating functions in a chain-like molecule based on the shield-sticky model of chemical association. The model adopts five molecular parameters, i.e. r_i, σ_ii ε_ii/k, δε_ii/k and ω_ii, for a polymer species i, where the last two are responsible for association. These parameters can be obtained from the pVT data of the corresponding molten homopolymer i. The model can be used to correlate pVT data for molten copolymers with an adjustable parameter describing the interaction between different polymer species. The model can also be used to calculate vapor–liquid equilibria (VLE) for copolymer solutions with three adjustable interaction parameters.     

Synthesis and reactivity of 3-amino-1H-pyrazolo[4,3-c]pyridin-4(5H)-ones: development of a novel kinase-focussed library

3-Amino-1H-pyrazolo[4,3-c]pyridin-4(5H)-ones represent a potentially attractive heteroaromatic scaffold for drug-discovery chemistry. In particular, the arrangement of hydrogen bond donor and acceptor groups in the bicyclic core can fulfil the requirements for ATP competitive binding to kinase enzymes. Efficient and regioselective routes from simple starting materials to novel functionalised 3-amino-1H-pyrazolo[4,3-c]pyridin-4(5H)-ones and related 3-amino-2H-pyrazolo[4,3-c]pyridines were explored and adapted for parallel synthesis, resulting in a library of compounds suitable for screening against kinases and other cancer drug targets. Methods for substituent variation at five distinct positions around the bicyclic core were devised to generate sets of compounds containing two- or three-point diversity.     

Switched enantiopreference of Humicola lipase for 2-phenoxyalkanoic acid ester homologs can be rationalized by different substrate binding modes

Humicola lanuginosa lipase was used for enantioselective hydrolyses of a series of homologous 2-phenoxyalkanoic acid ethyl esters. The enantioselectivity (E-value) of the enzyme changed from an (R)-enantiomer preference for the smallest substrate, 2-phenoxypropanoic acid ester, to an (S)-enantiomer preference for the homologous esters with longer acyl moieties. The E-values span the range from E=13 (R) to E=56 (S). A molecular modeling study identified two different substrate-binding modes for each enantiomer. We found that the enantiomers favored different modes. This discovery provided a model that offered a rational explanation for the observed switch in enantioselectivity.     

Advanced recognition of explosives in traces on polymer surfaces using LIBS and supervised learning classifiers

The large similarity existing in the spectral emissions collected from organic compounds by laser-induced breakdown spectroscopy (LIBS) is a limiting factor for the use of this technology in the real world. Specifically, among the most ambitious challenges of today's LIBS involves the recognition of an organic residue when neglected on the surface of an object of identical nature. Under these circumstances, the development of an efficient algorithm to disclose the minute differences within this highly complex spectral information is crucial for a realistic application of LIBS in countering explosive threats. An approach cemented on scatter plots of characteristic emission features has been developed to identify organic explosives when located on polymeric surfaces (teflon, nylon and polyethylene). By using selected spectral variables, the approach allows to design a concise classifier for alerting when one of four explosives (DNT, TNT, RDX and PETN) is present on the surface of the polymer. Ordinary products (butter, fuel oil, hand cream, olive oil and motor oil) cause no confusion in the decisions taken by the classifier. With rates of false negatives and false positives below 5%, results demonstrate that the classification algorithm enables to label residues according to their harmful nature in the most demanding scenario for a LIBS sensor.     

Larvicidal activity of plant extracts from Colombian North Coast against Aedes aegypti L. mosquito larvae

The Aedes aegypti L. mosquito is considered the most important vector of arboviruses in the world. Insecticide-resistant phenomenon is a difficult barrier to overcome for government health entities around the planet. This problem forces to increase the concentrations of insecticides in the environment causing environmental pollution and health threat to human beings. Plants have been used to combat pests for centuries and are an eco-friendly source for the search for molecules with larvicidal activity. In this work, 65 ethanol-soluble extracts from 56 plants of the Colombian Caribbean region were evaluated as potential larvicides against Aedes aegypti mosquito, as well as, for their toxic effects on non-target organism. A high larvicidal activity was found for 16 ethanol extracts, however, the most potent activity against the larvae was obtained for the five plant extracts corresponding to the seeds of Annona squamosa L., Annona cherimolia L., Annona muricata L., Tabernaemontana cymosa Jacq. and Mammea americana L., with LC₅₀ value of 58.44, 65.10, 84.92, 25.02 and 38.58 ppm, respectively. T. cymosa seeds extract was selected for bio-guided fractionation due to the high larvicidal activity showed. Through chromatographic techniques and Nuclear Magnetic Resonance (NMR), five indole alkaloids were isolated and characterized from T. cymosa active fraction; among them, voacangine showed activity with a LC₅₀ of 5.13 ppm indicating a high larvicidal potency besides low toxicity against model organism Caenorhabditis elegans. We also report a new indole alkaloid from T. cymosa. Our study demonstrated the potential of the Colombian Caribbean flora as a host of bioactive plants against important vectors such as the A. aegypti mosquito with potential use in controlled environments.     

Synthesis of Ba(V1−xTix)S3 (0 ≦ x ≦ 1.0) compounds and their structural transitions

The two-layer hexagonal perovskites Ba(V_1?xTi_x)S₃ (0 ≦ x ≦ 1.0) are prepared in a H₂S stream. A in a H₂S stream. A structural phase transition from a hexagonal to an orthorhombic form takes place for the powder samples with 0 ≦ x ≦ 0.4 and their transition temperatures are determined to be 250 K for x = 0, 240 K for x = 0.1, 222 K for x = 0.2, 195 K for x = 0.3, and 160 K for x = 0.4, respectively. The phase transformation does not occur down to 90 K for the materials above x = 0.5.     

On the “New possibility of chemical bonding”: Anti-resonance phenomena

A chemical bond in the absence of a local minimum in the potential surface has been obtained recently by Pollak, Manz, Meyer and Römelt for the I-HI complex. We associate this “new chemical bond” with Simon's proof that a discrete spectrum can be obtained even for a quantum Hamiltonian for which the volume |(P, q)|P² + V(q) ? El is infinite and therefore an infinite number of classical trajectories lead to dissociation (an “anti-resonance” phenomenon). A simple model Hamiltonian which yields for any given E an infinite number of classical dissociative trajectories and also has a discrete spectrum in quantum mechanics, is presented.     

Capillary and gel electromigration techniques and MALDI-TOF MS – Suitable tools for identification of filamentous fungi

Microbial strains are now spreading out of their original geographical areas of incidence and previously adequate morphological identification methods often must be accompanied by a phenotypic characterization for the successful microbial identification. The fungal genus Monilinia represents a suitable example. Monilinia species represent important fruit pathogens responsible for major losses in fruit production. Four closely related spp. of Monilinia: Monilinia laxa, Monilinia fructigena, Monilinia fructicola and Monilia polystroma have been yet identified. However, the classical characterization methods are not sufficient for current requirements, especially for phytosanitary purposes.     

Yeasts and Lactic Acid Bacteria Mixed-Specie Biofilm Formation is a Promising Cell Immobilization Technology for Ethanol Fermentation

We previously found that some Saccharomyces cerevisiae and Lactobacillus plantarum remarkably formed mixed-specie biofilm in a static co-culture and deduced that this biofilm had potential as immobilized cells. We investigated the application of mixed-specie biofilm formed by S. cerevisiae BY4741 and L. plantarum HM23 for ethanol fermentation in repeated batch cultures. This mixed-specie biofilm was far abundantly formed and far resistant to washing compared with S. cerevisiae single biofilm. Adopting mixed-specie biofilm formed on cellulose beads as immobilized cells, we could produce enough ethanol from 10 or 20 % glucose during ten times repeated batch cultures for a duration of 10 days. Cell numbers of S. cerevisiae and L. plantarum during this period were stable. In mixed-specie biofilm system, though ethanol production was slightly lower compared to S. cerevisiae single-culture system due to by-production of lactate, pH was stably maintained under pH 4 without artificial control suggesting high resistance to contamination. Inoculated model contaminants, Escherichia coli and Bacillus subtilis, were excluded from the system in a short time. From the above results, it was indicated that the mixed-specie biofilm of S. cerevisiae and L. plantarum was a promising immobilized cell for ethanol fermentation for its ethanol productivity and robustness due to high resistance to contamination.     

Fast Determination of Lipophilicity by HPLC

A rapid method for the determination of lipophilicity by reversed-phase high-performance liquid chromatography is presented with a study of a set of 29 molecules representing various functional groups. The use of a short column packed with a polar-embedded phase and octanol-saturated water as eluent for direct measurement of log k _w is described. Extrapolation for log k _w measurements can be avoided for solutes having log P in the octanol/water system of less than 3.2. The gain in terms of productivity and simplicity of analysis over the direct measurement shows the usefulness of this method for industrial applications. Good correlations between log P values found in the literature and measured log k _w values were obtained.     

Fine structure and transition probabilities of the 2p 5 nl bound excited states of Ne atom

We present a semi-empirical calculational procedure for thep ⁵ nl bound excited states of rare gas atoms based on the use of an LS-dependent orbital for an excitednl electron outside a frozen Hartree-Fockp ⁵ core. The spin-orbit interaction is accounted for approximately using a localized Hartree potential. The contribution from the long-range core polarization is estimated by using a parametrized potential. A model potential is also introduced to represent partially the short-range multi-electron interactions for thep ⁵ np levels. The energy levels are calculated by diagonalizing the Hamiltonian matrix following anLS →jl transformation. The calculated fine structure of the Nep ⁵ ns,p ⁵ np,p ⁵ nd, andp ⁵ nf ¦ (jl)KJ〉 levels are in close agreement with the observed level splittings. The transition probabilities are also in agreement with earlier theoretical and experimental results.     

Plant-assisted synthesis of gold nanoparticles for photocatalytic,anticancer, and antioxidant applications

The current study is the first to disclose a quick, cost-effective, and environmentally safe phytofabrication of gold nanoparticles (AuNPs) that remained stable for three months utilizing the aqueous extract of T. capensis leaves to uphold the principles of green chemistry such as less hazardous chemical syntheses, safer solvents and auxiliaries, design for energy efficiency, and use of renewable feedstocks. Several approaches were used to describe T. capensis-AuNPs, with the findings revealing the successful phytoformation of crystalline AuNPs with a dark brown color, spherical nanoparticles with a size range of 10–35 nm, a surface plasmon peak at 515 nm, and a surface charge of ? 24.5 mV. T. capensis-AuNPs showed 72% photodegradation efficacy against malachite green. The MTT experiment revealed that T. capensis-AuNPs and T. capensis extract had excellent potency in preventing the development and proliferation of human breast cancer cells (MCF7 cell line), with IC50 values of 9.6 g/mL and 23.3 g/mL, respectively. Both T. capensis-AuNPs and T. capensis extract had significant antioxidant efficacies, with DPPH scavenging percentages of 70.73% for T. capensis-AuNPs and 85.62% for T. capensis extract. Consequently, these findings suggest a new and sustainable route for the green synthesis of AuNPs using the aqueous extract of T. capensis.     

Baicalin Represses Type Three Secretion System of Pseudomonas aeruginosa through PQS System

Therapeutics that target the virulence of pathogens rather than their viability offer a promising alternative for treating infectious diseases and circumventing antibiotic resistance. In this study, we searched for anti-virulence compounds against Pseudomonas aeruginosa from Chinese herbs and investigated baicalin from Scutellariae radix as such an active anti-virulence compound. The effect of baicalin on a range of important virulence factors in P. aeruginosa was assessed using luxCDABE-based reporters and by phenotypical assays. The molecular mechanism of the virulence inhibition by baicalin was investigated using genetic approaches. The impact of baicalin on P. aeruginosa pathogenicity was evaluated by both in vitro assays and in vivo animal models. The results show that baicalin diminished a plenty of important virulence factors in P. aeruginosa, including the Type III secretion system (T3SS). Baicalin treatment reduced the cellular toxicity of P. aeruginosa on the mammalian cells and attenuated in vivo pathogenicity in a Drosophila melanogaster infection model. In a rat pulmonary infection model, baicalin significantly reduced the severity of lung pathology and accelerated lung bacterial clearance. The PqsR of the Pseudomonas quinolone signal (PQS) system was found to be required for baicalin’s impact on T3SS. These findings indicate that baicalin is a promising therapeutic candidate for treating P. aeruginosa infections.     

Intrinsic adsorption properties of CO2 on 5A and 13X zeolite

Data for the adsorption of CO₂ on 5A (CaA) and 13X (NaX) zeolite are critically evaluated. In addition, fresh data for the adsorption of CO₂ on 13X zeolite is reported. Three intrinsic properties are examined: q _max , the saturation loading, K _H , the Henry constant, and (?ΔH) _q , the isosteric heat of sorption. Below a reduced temperature T _r , of 0.9, the q _max values for both 5A and 13X zeolites are similar to theoretical values that may be derived using zeolitic crystallographic properties and the sorbate density calculated using the Rackett equation. For the region 0.9 ≤ Tr ≤ 1.0, the calculated q _max values exceed the theoretical values similarly calculated, indicating that the molecules have a smaller molar volume than in a similar liquid phase. This is a similar result to that observed in ionic liquids. Linear regressed equations are derived for q _max for the region 0.9 ≤ Tr ≤ 1.25. The Henry constant values for 5A are remarkably consistent for the five studies examined, with a correlation coefficient, R, of 0.999 for the van’t Hoff equation, but for the seven studies examined in 13X the data is more disperse as indicated by a correlation coefficient R of 0.899 for the van’t Hoff equation. The values of (?ΔH) _q , the isosteric heat of sorption are in agreement with the literature. An explanation is advanced for the discrepancy between the higher heats of sorption values obtained calorimetrically from those obtained from isosteric adsorption studies. Finally, the fresh data is observed to fit the Toth model with regression coefficients of 0.999. However, the parameters obtained for the Toth equation by regression are significantly different from the intrinsic properties derived earlier, indicating the difficulty of deriving intrinsic parameters from isotherm fits.     

Parameterization of an empirical model for the prediction of n-octanol, alkane and cyclohexane/water as well as brain/blood partition coefficients

Quantitative information of solvation and transfer free energies is often needed for the understanding of many physicochemical processes, e.g the molecular recognition phenomena, the transport and diffusion processes through biological membranes and the tertiary structure of proteins. Recently, a concept for the localization and quantification of hydrophobicity has been introduced (Jäger et al. J Chem Inf Comput Sci 43:237–247, 2003). This model is based on the assumptions that the overall hydrophobicity can be obtained as a superposition of fragment contributions. To date, all predictive models for the logP have been parameterized for n-octanol/water (logP _oct ) solvent while very few models with poor predictive abilities are available for other solvents. In this work, we propose a parameterization of an empirical model for n-octanol/water, alkane/water (logP _alk ) and cyclohexane/water (logP _cyc ) systems. Comparison of both logP _alk and logP _cyc with the logarithms of brain/blood ratios (logBB) for a set of structurally diverse compounds revealed a high correlation showing their superiority over the logP _oct measure in this context.