Ferrocenoyl-amino acids: redox response towards di- and trivalent metal ions

The interaction of six ferrocene-amino acid conjugates (Fc-CO-Gly-OH (2a), Fc-CO-Asp-OH (3a), Fc-CO-Glu-OH (4a), 1,1′-Fc(CO-Gly-OH) (2b), 1,1′-Fc(CO-Asp-OH) (3b), and 1,1′-Fc(CO-Glu-OH) (4b)) with Mg²⁺, Ca²⁺, Zn²⁺, La³⁺, and Tb³⁺ was investigated in aqueous solutions using cyclic voltammetry (CV) and differential pulse voltammetry (DPV). Addition of metal ions to solutions caused, in some cases, large changes in the half-wave potential, E_1/2. Our electrochemical results show that the Gly systems, 2a and 2b, show a preference for binding Mg²⁺, whereas the Asp and Glu conjugates prefer binding Ln³⁺.     

Conversion of novel palladacycles into oxopyrrolo[3,4-b]quinolines

The quinolinylcyclopalladated complexes 3a–b were synthesised in good yields (81% and 77%) by the insertion reaction of the prepared dinuclear palladium complexes [Pd(C,N-2-C₉H₄N-CHO-3-R-6)Cl(PPh₃)]₂ [(R = H (2a), R = OMe (2b)] with isonitrile XyNC (Xy = 2,6-Me₂C₆H₃). The cyclopalladated complexes 3a–b were also obtained in low yields (39% and 33.5%) via a one pot oxidative addition reaction of quinoline chloride 1a–b with isonitrile XyNC:Pd(dba)₂ (4:1). The reactions of 3a–b with Tl(TfO) (TfO = triflate, CF₃SO₃) in the presence of H₂O or EtOH causes depalladation reactions of the complexes to provide the corresponding organic compounds 4a–b, 5a–b and 6a–b in yields (41%, 27% and 18–19%). The products were characterized by satisfactory elemental analyses and spectral studies (IR, ¹H, ¹³C and ³¹P NMR). The crystal structures of 2a, 3a and 3b were determined by X-ray diffraction studies.     

Selective synthesis of 4,5-dihydroimidazo- and imidazo[1,5-a]quinoxalines via modified Pictet–Spengler reaction

An efficient tandem approach for the selective synthesis of 4,5-dihydroimidazo[1,5-a]quinoxalines 6a–g and imidazo[1,5-a]quinoxalines 7a–h by the reaction of 2-imidazolyl anilines 4a–c with aryl aldehydes 5a–k under mild reaction conditions is described. Introduction of electron releasing alkyl groups in substrates 4a–b was found to be instrumental for the success of the reaction.     

Phosphorus–nitrogen compounds: Part 19. Syntheses,structural and electrochemical investigations,biological activities,and DNA interactions of new spirocyclic monoferrocenylcyclotriphosphazenes

The reactions of hexachlorocyclotriphosphazatriene, N₃P₃Cl₆, with N-alkyl-N-ferrocenylmethylethylene diamines, FcCH₂NH(CH₂)₂NHR₁ [R₁ = Me (1) and Et (2)], and sodium [3-(N-ferrocenylmethylamino)-1-propanoxide] (3) produce spirocyclic monoferrocenyl tetrachlorophosphazenes (1a–3a). The tetrapyrrolidinophosphazenes (1b–3b) are prepared from the reactions of corresponding phosphazenes (1a–3a) with excess pyrrolidine. The reaction of 1a with excess morpholine affords geminal-morpholino phosphazene (1c), whilst the reactions of 2a and 3a give diethylaminotrimorpholino (2c) and fully substituted morpholino products (3c), respectively. The structural investigations of the compounds are examined by Fourier transform IR, MS, ¹H, ¹³C, ³¹P NMR, DEPT, HETCOR, and HMBC techniques. The crystal structures of 3b and 3c are determined using X-ray crystallography. Cyclic voltammetric and chronoamperometric data show that compounds 1a–3a, 1b–3b, and 1c–3c exhibit electrochemically reversible one-electron oxidation of Fc redox centers which are hardly affected by the substituents on the phosphazene ring. The compounds 1b, 2b, 3b, and 3c are screened for antibacterial activities against Gram-positive and Gram-negative bacteria and for antifungal activities against yeast strains. In addition, the antituberculosis activities (in vitro) of these compounds are evaluated against INH-susceptible reference strain M. tuberculosis H37Rv, and six multi-drug resistant clinical M. tuberculosis isolates. Compound 2b is found to be the most active against the susceptible the reference strain. In addition, 1b, 2b, and 3c are active against all the multidrug-resistant clinical isolates at the highest concentrations. Gel electrophoresis data indicate that the compounds promote the formation of strand breaks in plasmid DNA. Almost all the concentrations lost of supercoiled DNA suggests that the compound 3b is very efficient plasmid-modifier. The compounds inhibit BamHI cleavage of pUC18 DNA while restricting HindIII.     

Rhodamine based derivative and its zinc complex: synthesis and recognition behavior toward Hg(II)

A simple fluorescent probe, which contains rhodamine and aminoquinoline moieties, was designed and prepared for selective detection of Hg²⁺ in acetonitrile. RbQ exhibited high selectivity and sensitivity toward Hg²⁺ over other common metal ions. The recognition of RbQ toward Hg²⁺ can be detected by fluorescence spectra, absorption spectra, and even by naked eyes. The binding ratio of the RbQ–Hg²⁺ complex was found to be 1:1 according to Job plot experiment, and the limit of detection was 1.05×10⁻⁷ M. Moreover, the prepared complex RbQ–Zn²⁺ (RbQZ) could detect Hg²⁺ in a ratiometric way and showed lower limit of detection (2.95×10⁻⁸ M) than RbQ in the same condition. Finally, we also demonstrated that the aminoquinoline–zinc complex could be served as a new and effective FRET donor for rhodamine derivatives.     

Tubular structures bearing channels in organic crystals composed of adamantane-based macrocycles

Five macrocyclic molecules (1–5) were efficiently synthesized from the dimerization and trimerization of di-substituted adamantane derivatives, which were composed of three different aromatic units and two different linker groups. Three single-crystals were obtained from these macrocyclic molecules, including a set of pseudopolymorphs (3a and 3b) of macrocycle 3 and another macrocycle 5 (5a). Single crystal X-ray analysis revealed that the three monocyclic compounds were rectangular or square in shape with solvent molecules in the cavity. Macrocycle 3 in 3a formed stacks to produce tubular structures with channels that assembled into three-dimensional networks through CH/π interactions.     

A new Fe fluorescent chemosensor based on aggregation-induced emission

A new tetraphenylethylene (TPE)-based sensor M1 bearing double 2-methylpyridyl-2-methylthiophenylamino units linked with triazole moieties was reported. Both UV–vis and fluorescence spectroscopic studies demonstrated that M1 was highly sensitive and selective toward Fe³⁺ over other metal ions in THF/H₂O solution based on the aggregation-induced emission quenching mechanism. The lowest detection limit of M1 for Fe³⁺ is 0.7 μM. The detailed fluorescent titration study suggested that the binding stoichiometry of the M1–Fe³⁺ complex was 1:2, and the structure between M1 and the Fe³⁺ complex was confirmed by the ¹H NMR titration.     

Synthesis and pharmacological evaluation of 6a,7-dihydro-6H,13H-pyrazino[1,2-a;4,5-a′]diindole analogs as melatonin receptor ligands

The synthesis of two melatonin-derived analogs of the novel 6a,7-dihydro-6H,13H-pyrazino[1,2-a;4,5-a′]diindole ring system is described. The non-methoxy and methoxy analogs, 4a and 4b were prepared in seven steps starting from indoline-2-carboxylic acid 5a and 5-methoxyindoline-2-carboxylic acid 5b, respectively. While 4a exhibited micromolar affinities for both melatonin receptors, the methoxy analog 4b displayed moderate affinity for MT₂ receptors (K_i=0.41 μM) being 4.4-fold higher than for the MT₁ subtype.     

Dinuclear copper(II) complexes of a novel 3-(aminomethyl)naphthoquinone Mannich base: Synthesis,structural, magnetic and electrochemical studies

A novel versatile tridentate 3-(aminomethyl)naphthoquinone proligand, 3-[N-(2-pyridylmethyl)aminobenzyl]-2-hydroxy-1,4-naphthoquinone (HL), was obtained from the Mannich reaction of 2-hydroxy-1,4-naphthoquinone (Lawsone) with 2-aminomethylpyridine (amp) and benzaldehyde. The reactions of HL with CuCl₂·2H₂O yielded two novel dinuclear copper(II) complexes, [Cu(L)(H₂O)(μ-Cl)Cu(L)Cl] (1b), [CuCl(L)(μ-Cl)Cu(amp)Cl] (2) and a polymeric compound, [Cu(L)Cl)]_n (1a), whose relative yields were sensitive to temperature, reagents concentration and presence of base. The crystalline structures of 1b and 2 were determined by X-ray diffraction studies. The two copper atoms in complex 1b are connected by a single chloro bridge with a Cu?Cu separation of 4.1342(8) Å and Cu(1)–Cl(1)–Cu(2) angle of 109.31(4)°. In complex 2 the two copper atoms are held together by a chloro and a naphthalen-2-olate bridges [Cu(1)–Cl(2)–Cu(2) and Cu(1)–O(1)–Cu(2) angles being 83.31(3) and 109.70(9)°, respectively, and the Cu?Cu separation, 3.3476(9) Å]. As expected, variable-temperature magnetic susceptibility measurements of complex 1b showed weak antiferromagnetic intramolecular coupling between the copper(II) centers, with J = −5.7 cm⁻¹, and evidenced for complex 2 strong antiferromagnetic coupling, with J ∼ −120 cm⁻¹. Furthermore, the magnetic behaviour of compound 1a suggested an infinite 1D coordination polymeric structure in which the copper(II) centers are connected by Cl–Cu–Cl bridges. Solution data (UV–Vis spectroscopy and cyclic voltammetry) indicated structural changes of 2 and 1a in CH₃CN, and evidenced conversion of polymer 1a into dimer 1b.     

Synthesis, characterization and in vitro DNA binding studies of tin(IV) complexes of tert-butyl 1-(2-hydroxy-1-phenylethylamino)-3-methyl-1-oxobutan-2-yl carbamate

Tin(IV) complexes 1(a and b) and 2(a and b) of valine derived peptide derivatives were synthesized and characterized on the basis of elemental analysis, IR, ¹H, ¹³C, ¹¹⁹Sn NMR, ESI-MS spectra and molar conductance measurements. The C-Sn-C angle was estimated from ^I3C and ¹H NMR data ¹J(¹¹⁹Sn, ^I3C) = 623 Hz; solution ²J(¹¹⁹Sn, ¹H) = 93.04 Hz to be 149.9°. In vitro binding studies of complexes 1 and 2 under physiological conditions at room temperature with CT-DNA were carried out employing UV-visible, fluorescence, circular dichroism and viscometric studies. The binding affinity of the complexes was quantified by calculating the K_b values and it follows the order 2a > 1a > 2b > 1b. To further examine the specific mode of binding, the interaction of complexes 2(a and b) were carried out with 5′GMP and 5′TMP by using absorption and NMR (¹H, ³¹P) spectroscopy. The supercoiled pBR322 plasmid DNA cleavage activity of the complexes was ascertained by gel electrophoresis assay. The complexes cleave supercoiled pBR322 plasmid DNA efficiently into its nicked form at micromolar concentrations.     

A new protecting group ‘3,5-O-sulfinyl’ for xylo-nucleosides. A simple and efficient synthesis of 3-amino-3-deoxyadenosine (a puromycin intermediate), 2,2-anhydro-pyrimidine nucleosides and 2,3-anhydro-adenosine

We developed a new protecting group, the cyclic sulfite for the protection of the 3^′,5^′-dihydroxy group of nucleosides. Seven cyclic sulfites, 4a-c, 5a-b, and 6a-b were prepared in high yields from the corresponding xylo-uridines 1 and 2, and xylo-adenosines 3 with thionyl chloride, respectively. Synthesis of the puromycin intermediate 8 was carried out by deprotection of the sulfite moiety through an intramolecular cyclization of the 2^′-α-carbamate 7.     

A sinapic acid–calix[4]arene hybrid selectively binds Pb over Hg and Cd

The binding affinity for Pb²⁺, Cd²⁺ and Hg²⁺ of the sinapic acid–calix[4]arene hybrid 2, having four sinapyl pendants at the upper rim, has been investigated via an UV–Vis study. Compound 2 has better complexing ability than the monomeric p-phenetidine derivative 1. This highlights that the clustering of sinapyl units in a basket-like structure, dictated by the calixarene scaffold, greatly enhances the complexing properties. Ligand 2 forms complexes even with Hg²⁺, which is not complexed by 1 at all; the complexes formed by 2 with Pb²⁺ and Cd²⁺ are much stronger than the analogous complexes formed by 1. The UV–Vis investigation shows that the hybrid 2 markedly favors Pb²⁺ over Cd²⁺ and Hg²⁺. Information on the structural properties of the complex species was obtained by ¹H NMR spectroscopy. NMR data show that all three metal ions are placed into the cavity consisting of the calixarene scaffold and the sinapyl pendants, though their binding affects the coordinating regions to a different extent.     

Spectroscopic,structure and DFT studies of copper(II) and palladium(II) complexes of pyridine-2-carboxaldehyde-2-pyridylhydrazone: A chromogenic agent for palladium(II)

A heterocyclic hydrazone ligand, pyridine-2-carboxaldehyde-2-pyridylhydrazone, HL, 1, was investigated as a new chromogenic agent for selective detection of Pd²⁺. The ligand HL, 1, undergoes 1:1 complexation with Pd²⁺ and Cu²⁺ to form complexes [Pd(L)Cl], 1a and [Cu(HL)Cl₂], 1b respectively. The complex 1a gives a characteristic absorption peak at 536 nm with distinct reddish-pink coloration. The change in color can easily be distinguished from other metal complexes by the naked eye. No obvious interference was observed in the presence of other metal ions (Na⁺, K⁺, Mg²⁺, Ca²⁺, Al³⁺, Mn²⁺, Fe³⁺, Co²⁺, Ni²⁺, Cu²⁺, Zn²⁺, Cd²⁺, Sn²⁺, Hg²⁺, Pb²⁺). The association constants, K_ass (UV–Vis), were found to be 5.52 ± 0.004 × 10⁴ for 1a and 4.94 ± 0.006 × 10⁴ for 1b at 298 K. On excitation at 295 nm, the ligand HL, 1 strongly emits at 372 nm due to an intraligand ¹(π–π^∗) transition. Upon complexation the emission peaks are blue shifted (λ_ex 295 nm, λ_em 358 nm for 1a and λ_ex 295 nm, λ_em 367 nm for 1b) along with a quenching (F/F₀ 0.32 for 1a and 0.88 for 1b) in the emission intensity. DFT and TDDFT calculations were highly consistent with the spectroscopic behavior of the ligand and complexes. The molecular structure of the complex 1b has been determined by single crystal X-ray diffraction studies.     

Synthesis, properties, and oxidizing function of 6-substituted 7,9-dimethylcyclohepta[b]pyrimido[5,4-d]pyrrole-8(7H),10(9H)-dionylium tetrafluoroborates

Uracil-annulated heteroazulenes, 6-substituted 7,9-dimethylcyclohepta[b]pyrimido[5,4-d]pyrrole-8(7H),10(9H)-dionylium tetrafluoroborates 7a,b·BF₄⁻, which are the isoelectronic compounds of 5-dezazaflavin, were synthesized. X-Ray crystal analysis and MO calculations were carried out to clarify the structural characteristics of 7a,b·BF₄⁻. The stability of cations 7a,b is expressed by the pK_R+ values which were determined spectrophotometrically to be 10.9 and 11.2, respectively. The electrochemical reduction of 7a,b exhibited high reduction potentials at −0.84 and −0.87 (V vs Ag/AgNO₃) upon cyclic voltammetry (CV). A good linear correlation between the pK_R+ values and reduction potentials (E1_red) of 7a,b·BF₄⁻ and reference compounds 4·BF₄⁻ and 5·BF₄⁻ was obtained. In a search of the reactivity, reactions of 7a,b·BF₄⁻ with some nucleophiles, hydride and diethylamine, were carried out to clarify that the introduction of nucleophiles to give regio-isomers is dependent on the nucleophile. The photo-induced oxidation reactions of 7a,b·BF₄⁻ toward some alcohols under aerobic conditions were carried out to give the corresponding carbonyl compounds in more than 100% yield [based on compounds 7a,b·BF₄⁻], suggesting the oxidizing function of 7a,b·BF₄⁻ toward alcohols in the autorecycling process.     

Fluorescent sensor of fluorene derivatives having phosphonic acid as a fluorogenic ionophore: synthesis and static quenched properties for Fe(III)

A series of novel fluorene derivatives containing –PO(OH)₂ (1, 2), –HS (3), and –N⁺ (CH₃)₃ (4) were synthesized and only phosphonic-functionalized fluorene derivatives can detect Fe³⁺ with high selectivity over other metal ions. The fluorescence quenching of 1 and 2 with titration Fe³⁺ in water–DMF solution fits the Perrin model of static quenching. Spectral analysis showed that Fe³⁺ bound with fluorene-based chemosensor through the O-atoms at the phosphonic group to form nonfluorescent complexes. The binding ratio was estimated by the Job plot and the trace levels of iron in samples were successfully monitored.     

Synthesis and photophysical properties of water-soluble sulfonato-Salen-type Schiff bases and their applications of fluorescence sensors for Cu in water and living cells

A series of water-soluble sulfonato-Salen-type ligands derived from different diamines including 1,2-ethylenediamine (Et-1–Et-4), 1,2-cyclohexanediamine (Cy-1 and Cy-2), 1,2-phenylenediamine (Ph-1–Ph-3 and PhMe-1–PhMe-4), and dicyano-1,2-ethenediamine (CN-1) has been designed and prepared. Sulfonate groups of ligands ensure good stability and solubility in water without affecting their excited state properties. These ligands exhibit strong UV/Vis-absorption and blue, green, or orange fluorescence. Time-dependent-density functional theory calculations have been undertaken to reveal the influence of ligand nature, especially sulfonate groups, on the frontier molecular orbitals. Since their fluorescence is selectively quenched by Cu²⁺, the sulfonato-Salen-type ligands can be used as highly selective and sensitive turn-off fluorescence sensors for the detection of Cu²⁺ in water and fluorescence imaging in living cells.     

H-bonding directed one-step synthesis of novel macrocyclic peptides from ε-aminoquinolinecarboxylic acid

Two macrocyclic peptides 1a and 1b were synthesized directly from ε-aminoquinolinecarboxylic acid 2a and 2b, respectively. The preorganization of the uncyclized intermediates mediated by hydrogen bonding assisted the cyclization. The structures of 1a and 1b were characterized by ¹H and ¹³C NMR spectroscopy and MALDI-TOF MS analysis. Solid state structure of 1a was investigated by single crystal X-ray studies. Their aggregation behaviors in solution were studied by both variable concentration and temperature ¹H NMR experiments.     

Three-step pathway towards bis(1,2,3-triazolyl-γ-propylsilatranes) as Cu fluorescent sensor,via ‘Click Silylation’

A series of substituted aniline derivatized bis(1,2,3-triazolyl-γ-propylsilatranes) 3a–3f were designed in good yield from their triethoxysilane analogues via Cu(I) ‘Click Silylation’. All the silatranes 3a–3f were characterized by IR, NMR (¹H, ¹³C) and HRMS studies. All these compounds were explored for their thermal stability by thermogravimetric analysis (TGA)/differential thermal analysis (DTA)/differential scanning calorimetry (DSC) study and electronic properties by UV–vis spectroscopy and fluorescence study. The binding of silatranes 3a–3f to Cu²⁺ ion proves them to be good chemosensor. These silatranes were subjected to time dependent hydrolysis under normal atmospheric conditions. IR spectroscopic data support hydrolytic instability of 3a, 3c and 3e.     

Convenient synthesis and anion recognition properties of N-flurobenzoyl-N′-phenylthioureas in water-containing media

Novel artificial anionic receptors N-flurobenzoyl-N′-phenylthioureas were synthesized by simple steps in good yields. The binding properties for anions of these N-flurobenzoyl-N′-phenylthioureas and 2N-benzoyl-N′-phenyl thiourea were examined by UV-vis and ¹H NMR spectroscopy. By fluorination of the benzoyl chromophore, the receptors had higher binding affinity for tested anions than the receptor 2. Especially, we studied the anion binding efficiency of the receptors 1N-(3-flurobenzoyl)-N′-phenylthiourea and 2 in dimethyl and dimethyl sulfoxide-water binary solutions in detail respectively. In pure dimethyl sulfoxide, the receptors 1 and 2 had higher binding affinity for F⁻ over AcO⁻. However, as the ratio of water to dimethyl sulfoxide increases, we found the binding properties for tested anions of 1 and 2 changed in dimethyl sulfoxide-water binary solutions. The receptor 1 showed high binding affinity and selective ability for AcO⁻ in dimethyl sulfoxide containing water with varied ratios.     

Ratiometric fluorescence probe for two-photon bioimaging of Cr in living cells

We presented a ratiometric fluorescent probe dansylamide–rhodamine dyad (DANS–RB) for selectively detecting Cr³⁺ in semi-aqueous solution. The detection mechanism relies on the fluorescent resonance energy transfer (FRET) process from the dansylamide (energy donor) to the rhodamine (energy acceptor) after the addition of Cr³⁺. The cell-permeability of DANS–RB was confirmed by the two-photon fluorescence microscopy experiments, which demonstrated DANS–RB was a good candidate for monitoring the intracellular Cr³⁺ level with the ratiometric fluorescent method. Combining the excellent selectivity, the ratiometric quantitative detection, and the cell-permeability, DANS–RB may find a broad application in the investigation on biologically relevant species in living cells.