Self-assembly of coil-rod-coil molecules into bicontinuous cubic and oblique columnar assemblies depending on coil chain length

Coil-rod-coil molecules 1–3, consisting of four biphenyls and a p-terphenyl unit linked together with ether bonds as a rod segment and poly(propylene oxide) (PPO) with a degree of polymerization (DP) of 7, 12, 17 as coil segments were synthesized. These molecules contain lateral methyl groups at 2 and 5 positions of the middle benzene ring of p-terphenyl. The self-assembling behavior of molecules 1–3 was investigated by means of DSC, POM and SAXS in the bulk state. Molecule 1 self-organizes into a lamellar structure in the bulk state and transfers into a bicontinuous cubic structure in the liquid crystalline phase. While, molecules 2, 3 containing longer coil chains than 1 self-assemble into the hexagonal perforated lamellar (HPL) structures and the oblique columnar structures in the solid state and liquid crystalline phase, respectively. These results reveal that self-organizing behavior of such molecules is dramatically influenced by the length of the coil chains connected with the rod building block, as well as the lateral methyl groups incorporating in the middle of the rod segment.     

Thermotropic liquid crystals of 1H-imidazole amphiphiles showing hexagonal columnar and micellar cubic phases

The linear and polycatenar type 1H-imidazole amphiphiles showing a strong self-assembly tendency to build various supramolecular structures in bulk were synthesized by the esterification reaction of 4′-alkyloxy phenols (for 1-4) and hydroxyphenyl trialkyloxybenzoates (for 5-7) with 4-chlorocarbonyl imidazole. The linear 1H-imidazole amphiphiles formed thermotropic smectic phases, but compound 4 with an ethyl group instead of hydrogen on 1N did not show a mesophase. The polycatenar type 1H-imidazole amphiphiles (5-7) formed thermotropic hexagonal columnar and cubic phases. A phase transition was observed from a columnar phase to a cubic phase as the temperature increased on heating, and vice versa on cooling. In the POM study for compounds 5-7, optically isotropic phases first appeared on cooling from the isotropic melts, and then birefringent mesophases with a nonspecific texture appeared on further cooling. The X-ray analysis shows that the optically isotropic phases were very likely micellar cubic phases with Pm3n symmetry. The birefringent phases were confirmed as hexagonal columnar phases.     

Nanostaircase formation in the solid state from self-assembling synthetic terephthalamides with a common molecular scaffold

The design and construction of nanostructured materials using proper self-assembling molecular building blocks is a real challenge to scientists. Here, we present the formation of a new nano-architecture, i.e., nanostaircase in the solid state by using molecular building blocks, which are amenable to self-assembly in a directed manner to form the specific nanostructure. The molecular building blocks are terephthalamides 1-4, which are bis-terephthalamides of methyl esters of various α-amino acids including l-leucine 1, d-leucine 2, l-isoleucine 3, and α-aminoisobutyric acid (Aib) 4. All terephthalamides presented here, irrespective of their different side chain residues or stereochemistry, self-assemble to form supramolecular nanostaircase structures in crystals. Each terephthalamide contains two good hydrogen-bond donors and two hydrogen-bond acceptors. Two N-H?O hydrogen bonds and C-H?π interactions are responsible for the formation and stabilization of the nanostaircase structures in crystals. The molecular building blocks are packed orthogonally to each other in crystals and this arrangement can help the formation of nanostaircase structure upon self-assembly.     

Rational design of a nanoscale helical scaffold derived from self-assembly of a dimeric coiled coil motif

We describe a model for the design of synthetic α-helical peptides that are competent for self-assembly into structurally defined supramolecular fibrils on the basis of architectural features that have been programmed into the peptide sequence. In order to test the validity of this experimental model, we have synthesized an oligopeptide YZ1 that was designed to conform to this model and to self-assemble into an α-helical fibril in which the structural sub-units that comprise the fibril corresponded to coiled coil dimers. Peptide YZ1 was prepared via conventional solid-phase peptide synthesis and was composed of 42 amino acid residues such that the sequence defined six distinct heptad repeats of a coiled coil structure. The sequence of YZ1 was designed to adopt an α-helical conformation in which the helical protomers self-associate in a parallel orientation with a staggered orientation between adjacent peptides that corresponded to an axial displacement of three heptads. The self-assembly of peptide YZ1 was examined at varying levels of structural hierarchy for compliance of the observed structures with the experimental model. Circular dichroism spectroscopy provided evidence for an α-helical coiled coil structure for YZ1 in aqueous solution, which could be reversibly denatured through thermal methods. TEM measurements indicated the formation of long aspect-ratio fibers of uniform diameter from aqueous solutions of YZ1, however the dimensions of the fibers suggested that lateral association occurred between the fibrils corresponding to the 2-stranded helical bundles. The α-helical coiled coil structure was confirmed in the solid-state for fibers derived from self-assembly of YZ1 by a combination of wide-angle X-ray diffraction and ¹³C CP/MAS NMR spectroscopy. SANS and synchrotron SAXS measurements on dilute aqueous solutions of YZ1 provided a fibril diameter that corresponded to the lateral dimensions estimated for a dimeric coiled coil assembly on the basis of structural determinations of model peptides.     

Can a consecutive double turn conformation be considered as a peptide based molecular scaffold for supramolecular helix in the solid state?

Helices and sheets are ubiquitous in nature. However, there are also some examples of self-assembling molecules forming supramolecular helices and sheets in unnatural systems. Unlike supramolecular sheets there are a very few examples of peptide sub-units that can be used to construct supramolecular helical architectures using the backbone hydrogen bonding functionalities of peptides. In this report we describe the design and synthesis of two single turn/bend forming peptides (Boc-Phe-Aib-Ile-OMe 1 and Boc-Ala-Leu-Aib-OMe 2) (Aib: α-aminoisobutyric acid) and a series of double-turn forming peptides (Boc-Phe-Aib-Ile-Aib-OMe 3, Boc-Leu-Aib-Gly-Aib-OMe 4 and Boc-γ-Abu-Aib-Leu-Aib-OMe 5) (γ-Abu: γ-aminobutyric acid). It has been found that, in crystals, on self-assembly, single turn/bend forming peptides form either a supramolecular sheet (peptide 1) or a supramolecular helix (peptide 2), unlike self-associating double turn forming peptides, which have only the option of forming supramolecular helical assemblages.     

Assembly of novel phenanthroline-based cobalt(II) coordination polymers by selecting dicarboxylate ligands with different spacer length: From 1-D chain to 3-D interpenetrated framework

Three novel Co^II coordination polymers [Co(Dpq)₂(1,4-NDC)_0.5] · (1,4-HNDC) (1), [Co(Dpq)(2,6-NDC)] (2), and [Co₂(Dpq)₂(BPEA)₄(H₂O)] · H₂O (3) have been obtained from hydrothermal reaction of cobalt nitrate with the mixed ligands dipyrido[3,2-d:2′,3′-f]quinoxaline (Dpq) and three dicarboxylate ligands with different spacer length [1,4-naphthalene-dicarboxylic acid (1,4-H₂NDC), 2,6-naphthalene-dicarboxylic acid (2,6-H₂NDC) and biphenylethene-4,4′-dicarboxylic acid (BPEA)]. All these complexes are fully structurally characterized by elemental analysis, IR, and single-crystal X-ray diffraction analysis. Single-crystal X-ray analysis reveal that complex 1 is infinite one-dimensional (1-D) chains bridged by 1,4-NDC ligands, which are extended into a two-dimensional (2-D) supramolecular network by π-π interactions between the Dpq molecules. Complex 2 is a distorted three-dimensional (3-D) PtS network constructed from infinite Co-O-C rod units. Complex 3 has a 5-fold interpenetrated 3-D structure with diamondoid topology based on dinuclear [Co₂(CO₂)₂(μ₂-OH₂)N₄O₂] units and BPEA molecules. The different structures of complexes 1-3 illustrate the influence of the length of dicarboxylate ligands on the self-assembly of polymeric coordination architectures. In addition, the thermal properties of complexes 1-3 and fluorescent properties of complexes 2 and 3 have been investigated in the solid state.     

Halide binding and self-assembling behavior of Triazole-based acyclic and cyclic molecules

The present study demonstrates the use of triazole moiety in designing molecules endowed with the ability for self-assembly and molecular recognition. The receptors 7a and 9a having open structures bind to fluoride ion with good affinity. Various cyclophanes with 19-, 20-, 21-, 38-, and 40-membered rings containing triazole units were designed and synthesized. X-ray crystal structure of macrocycle 16 showed a tubular like architecture. Triazolophane 22 possesses bifurcated CH?N intramolecular hydrogen bonds and it further organizes in the solid state using CH?N interactions. Triazole based compounds are potential store house for exploiting CH?O and CH?N hydrogen bonding interactions for molecular self-assembly.     

Unsolvated [KFl(SiPh3)]n (Fl = fluorenyl): A supramolecular chain structure assembled exclusively through K?C-π-bonding

Unsolvated potassium 9-triphenylsilylfluorenide, [KFl(SiPh₃)]_n (3, Fl = fluorenyl), has been prepared in 89% yield by metalation of 9-fluorenyltriphenylsilane (2) with potassium hydride in toluene/THF and structurally characterized by X-ray diffraction. In the solid state, compound 3 comprises a linear chain structure. Due to the absence of coordinating solvent molecules, supramolecular self-assembly occurs solely via K?C-π-bonding.     

Synthesis of bitetrathiafulvalenes with FeCl3-mediated homo-coupling of tetrathiafulvalenylmagnesium bromide and formation of nanostructures from bitetrathiafulvalenes having long alkylthio chains

The FeCl₃-mediated homo-coupling of 4,5-bis(alkylthio)-4′-tetrathiafulvalenylmagnesium bromide 5 produced the corresponding bitetrathiafulvalene derivatives 2a-d in moderate yields (25-51%). Bitetrathiafulvalenes 2c and 2d having long alkylthio chains formed nanostructures and showed bulk electric conductivities (σ_rt = 2.6 − 8.0 × 10⁻⁵ S cm⁻¹) in the neutral state owing to the fastener effect. Interestingly, the nanofiber of tetrakis(dodecylthio)bitetrathiafulvalene 2d exhibited a p-type semiconductivity as detected by AFM.     

Structural properties and antibacterial potency of new supramolecular organotin(IV) dithiocarboxylates

A series of new organotin(IV) derivatives; Me₃SnL (1), Bu₃SnL (2), Ph₃SnL (3), Me₂SnClL (4), Bu₂SnClL (5), Ph₂SnClL (6), Et₂SnClL (7) and Et₂SnL₂ (8) where L = N-(2,3-dimethylphenyl)piperazine-1-carbodithioate have been synthesized and characterized by various analytical techniques. Among these techniques, ¹H and ¹³C NMR were carried out to asses solution structures whereas the solid state structures were confirmed by FT-IR and X-ray single crystal analysis (3, 5 and 8). Crystal structure of complex (3) and (5) showed distorted trigonal bipyramidal geometry and square pyramidal geometry, respectively. The inclination of the structure 5 towards square-pyramidal may be due to the presence of the Sn-Cl?HN-piperazine hydrogen bonds between the adjacent molecules. A supramolecular structure is shown by compound (8), with central tin atom exists in a distorted octahedral geometry. The antibacterial results indicated the profound activity of the compounds against various strains of bacteria. In addition to this, the triorganotin(IV) derivatives were found more active than diorganotin(IV) compounds.     

Branched supramolecular polymers formed by bifunctional cyclodextrin derivatives

Branched supramolecular polymers have been prepared from the mixture of 3-cinnamamide-α-CD (1) and 3-N^α-cinnamamidehexancarbonyl-N^?-cinnamamide-lysinamide-α-CD (3) and from the mixture of 3-cinnamamidehexanamide-α-CD (2) and 3. Compounds 1 and 2 formed a linear supramolecular polymer, whereas compound 3 having two guest moieties formed a hyperbranched supramolecular polymer. Physical properties of these supramolecular polymers were studied by viscosity measurements in aqueous solutions. When compound 3 was added to the solution of compound 2, the η_sp/C value of the mixture of 2 and 3 was found to be much higher than that of compound 2. These results indicate that compound 3 functions as a branching moiety to increase the viscosity. Supramolecular polymers consisting of compound 2 or 3 did not show the viscosity increase, whereas the mixture of 2 and 3 gave highly viscous solutions and formed fibers from the concentrated aqueous solutions. It is caused by the branching of linear supramolecular polymers with compound 3 and hydrophobic and/or hydrogen bonding interactions between supramolecular polymers.     

Thio-ether-footed resorcin[4]arenes: self-assembly in solution and interaction with gold nanoparticles as viewed by diffusion NMR

In this paper we present the synthesis and characterization of a new family of thio-ether-footed resorcin[4]arenes (2-4). Diffusion NMR was used to follow the self-assembly of 2-4 in CDCl₃ and CHCl₃ solutions. We found that all three molecules self-assemble into hexameric capsules. These capsules can accommodate both tertiary alkylamines and ammonium salts. From the diffusion NMR data we could conclude that the hexameric capsules of compounds 2-4 are of nearly equal stability and prevail in other organic solvents, such as dichloromethane and benzene but not in tetrahydrofuran (THF). By measuring the diffusion coefficients of 2-4 in different concentrations, we found that further aggregation, beyond the hexameric aggregates, is obtained, especially in the case of 2 at high concentrations. Different diffusion NMR techniques revealed that water molecules are part of the hexameric capsules of 2-4 in chloroform solutions. In addition diffusion NMR was used to examine the interactions of compounds 2-4 with gold nanoparticles in chloroform solution and provided an unequivocal evidence for the attachment of 2-4 to the surface of gold nanoparticles. No evidence was found for the formation of higher aggregates on the gold nanoparticles.     

Single stranded helical supramolecular architecture with a left handed helical water chain in ternary copper(II) tryptophan/diamine complexes

The ternary copper(II) complexes [Cu(l-trp)(bpy)](ClO₄) (1) and [Cu(l-trp)(phen)] (ClO₄) · 3H₂O (2) (where l-trp = l-tryptophan, bpy = bipridyl, phen = phenanthroline) have been synthesized. The single crystal X-ray structures for these complexes revealed that the monocationic Cu^II-units are interlinked through Cu–OCO–Cu connectivity and exist as helical coordination polymers. The two different helical strands composed with Cu1 and Cu2 independently, possess a similar pitch distance of 7.713 Å in complex 1. For complex 2, existing in the hydrated form, the Cu(II) polymeric strand and the hydrated water molecules have gained a supramolecular helical architecture with a similar pitch distance of 8.133 Å. The two helical strands in complex 1 are associated with right handed (PP) supramolecular chirality, while the helical water chain and the Cu^II-strand in 2 are self assembled into left handed (MM) helicity in the solid state. The solid state CD recorded for 1 and the dehydrated form of 2 exhibit a positive optical sign at their respective d–d band [λ_max = 667 nm, 1; λ_max = 630 nm, 2], the solution state CD for both these complexes are found to be inverted into a negative optical sign, which could be attributed to inversion of their associated supramolecular helicity. The TGA curve illustrates two distinct weight losses at 60 °C and 87 °C, equivalent to one and two water molecules, respectively. The PXRD pattern for the hydrated and dehydrated forms of 2 indicated a change, on comparison with the simulated diffractograph. The fluorescence properties of both these complexes, possessing tryptophan and bipy/phen, were investigated.     

Hydrothermal synthesis, crystal structures and fluorescence properties of three novel frameworks constructed with mixed ligands of isophthalic acid (1,3-BDC) and 2,3-di-2-pyridylquinoxaline (Dpdq): [M(1,3-BDC)(Dpdq)(H2O)m] · nH2O (M = Co, Cd or Zn)

Three novel metal-organic frameworks [M(1,3-BDC)(Dpdq)(H₂O)_m] · nH₂O, (M = Co^II (1), Cd^II (2) or Zn^II (3); m = 0, 1; n = 0, 1, 2, respectively) have been obtained from hydrothermal reactions of three different metal(II) nitrates with the same mixed ligands [isophthalic acid (1,3-BDC) and 2,3-di-2-pyridylquinoxaline (Dpdq)], and structurally characterized by elemental analyses, IR spectroscopy, and single-crystal X-ray diffraction analyses. Single-crystal X-ray analyses show that each pair of metal ions are bridged by various coordination modes of 1,3-BDC ligands to form left- and right-handed helical chains in 1, linear chains in 2, and double chains in 3, respectively. N-containing flexible ligand Dpdq takes a chelating coordination mode acting as terminal ligand. In the compound 1, adjacent left- and right-handed helical chains are packed through hydrogen bonds to form a two-dimensional (2-D) structure. In the compounds 2 and 3, adjacent chains are further linked by hydrogen bonds and/or π-π stacking interactions to form a three-dimensional (3-D) distorted hexagon meshes supramolecular framework for 2 and a ZnS-related three-dimensional (3-D) topology for 3, respectively. The different structures of compounds 1-3 illustrate that the influence of the metal ions in the self-assembly of polymeric coordination architectures. In addition, compounds 2 and 3 exhibit blue emission in the solid state at room temperature.     

Syntheses,characterizations and crystal structures of monomeric or macrocyclic compounds of di- or triorganotin (IV) moieties with 4,4′-thiodibenzenethiol

Six organotin compounds with 4,4′-thiodibenzenethiol (LH₂) of the type R_nSnL_4−nSnR_n (n = 3: R = Me 1, Ph 2, PhCH₂3, n = 2: R = Me 4, Ph 5, PhCH₂6) have been synthesized. All compounds were characterized by elemental analysis, IR and NMR (¹H, ¹³C, and ¹¹⁹Sn) spectra. The structures of compounds 1, 2, 4, 5 and 6 were also determined by X-ray diffraction analysis, which revealed that compounds 1 and 2 were monomeric structures, compounds 4, 5 and 6 were centrosymmetric dinuclear macrocyclic structures, and all the tin(IV) atoms are four-coordinated. Furthermore, supramolecular structures were also found in compounds 1, 2, 4, 5 and 6, which exhibit one-dimensional chains, two-dimensional networks or three-dimensional structures through intermolecular C–H?S weak hydrogen bonds (WHBs), non-bonded Sn?S interactions or C–H?π interactions.     

Liquid crystals in the series of 2,4,6-tristyryl-1,3,5-triazines

Alkaline condensation reactions of 2,4,6-trimethyl-1,3,5-triazine (1) and substituted benzaldehydes (2a-n) yield 2,4,6-tristyryl-1,3,5-triazines (3a-n). A sufficient number and length of the alkoxy chains at the benzene rings provide liquid crystalline phases Col_hd. A special structure was found for compound 3i with 9 hexyloxy chains; it exists in the solid state in a helical columnar arrangement, which is transformed by heating to a hexagonal columnar mesophase. Irradiation of the mesophases of 3i-3m leads to partial cyclodimerization reactions, which cause different textures and lower the clearing points. The border line between the irradiated and the unirradiated zones is preserved in the solid and the liquid crystalline temperature range but also over a surprisingly long period in the molten state. A detailed study of this imaging technique was performed for the LC phase of 3i.     

Multiple hydrogen-bond-induced supramolecular nanostructure from a pincer-like molecule and a [60]fullerene derivative

A new supramolecular self-assembled system between a perylene bisimide bearing diaminopyridine-substituted isophthalamide groups (PP) and a [60]fullerene containing barbituric acid moiety (C₆₀bar) through a complementary six-point hydrogen-bonding interaction was constructed. The formation of hydrogen bonding was confirmed by ¹H NMR spectra studies in CDCl₃. Fluorescence quenching experiments indicated that the fluorescence of PP was greatly quenched by the hydrogen-bonded C₆₀bar (K_sv=2.71×10⁴ M⁻¹). A steady and rapid cathodic 0.15 μA cm⁻² photocurrent response of the PP/C₆₀bar film deposited onto an ITO electrode was produced under the irradiation of 20 mW cm⁻² white light, indicating the presence of photo-induced electron transfer between PP and C₆₀bar. TEM images showed that spherical particles were fabricated by the self-assembly of PP and C₆₀bar through hydrogen-bonding interaction.     

Mixed supramolecular cation-carrier and anion-carrier facilitated transport for the selective alkali cations transport

In this paper, we describe the study of the membrane transport properties of mixed supramolecular macrocyclic cation-carriers [1·K]⁺, [2·Na]⁺ and phenylureidoarene anion-carriers [3–5·I]⁻ through bulk liquid membranes. Our efforts involve the evaluation of the transport performances of these systems designed to transport ionic salts NaI and KI and strongly depending on encoded molecular features of the anion-carrier subcomponents.     

l-Proline induced self-assembly of indolicidin derived palindromic tripeptide

We describe the synthesis, crystal structure, and various microscopic studies of the palindromic tripeptide WPW derived from antimicrobial peptide indolicidin. The present study reveals that tripeptide 1 and 2 undergo self-assembly to form vesicular structures after prolonged incubation, thus giving an interesting insight into the contribution of l-proline and flanking tryptophan residues in the self-assembly process. These vesicles were also amenable to simple focused ion beam (FIB)-aided bisection and thus possible to mill these vesicles to create different shapes. The circular dichroism (CD) analysis indicates that incubation promotes and stabilizes the more favorable secondary structures for 1 and 2. Preliminary result shows that tripeptide 1 exhibits appreciable interaction with Tb³⁺ as determined by quenching in tryptophan fluorescence.     

Syntheses, structures and photoluminescence of a series of coordination frameworks based on dicarboxylate anion and bis(imidazole) ligand

In this article, ten new coordination frameworks, namely, [Ni(H₂O)₆]·(L3) (1), [Zn(L3)(H₂O)₃] (2), [Cd(L3)(H₂O)₃]·5.25H₂O (3), [Ag(L1)(H₂O)]·0.5(L3) (4), [Ni(L3)(L1)] (5), [Zn(L3)(L1)_0.5]·H₂O (6), [Cd(L3)(L1)_0.5(H₂O)] (7), [CoCl(L3)_0.5(L1)_0.5] (8), [ZnCl(L3)_0.5(L2)_0.5] (9), and [CoCl(L3)_0.5(L2)_0.5] (10), where L1 = 1,1′-(1,4)-butanediyl)bis(imidazole), L2 = 1,1′-(1,4-butanediyl)bis(2-ethylbenzimidazole) and H₂L3 = 3,3′-(p-xylylenediamino)bis(benzoic acid), have been synthesized by varying the metal centers and nitrogen-containing secondary ligands. These structures have been determined by single-crystal X-ray diffraction analyses, elemental analyses and IR spectra. In 1, the L3 anion is not coordinated to the Ni(II) center as a free ligand. The Ni(II) ion is coordinated by water molecules to form the cationic [Ni(H₂O)₆]²⁺ complex. The hydrogen bonds between L3 anions and [Ni(H₂O)₆]²⁺ cations result in a three-dimensional (3D) supramolecular structure of 1. In compounds 2 and 3, the metal centers are linked by the organic L3 anions to generate 1D infinite chain structures, respectively. The hydrogen bonds between carboxylate oxygen atoms and water molecules lead the structures of 2 and 3 to form 3D supramolecular structures. In 4, the L3 anion is not coordinated to the Ag(I) center, while the L1 ligands bridge adjacent Ag(I) centers to give 1D Ag-L1 chains. The hydrogen bonds among neighboring L3 anions form infinite 2D honeycomb-like layers, in the middle of which there exist large windows. Then, 1D Ag-L1 chains thread in the large windows of the 2D layer network, giving a 3D polythreaded structure. Considering the hydrogen bonds between the water molecules and L3 anions, the structure is further linked into a 3D supramolecular structure. Compounds 5 and 7 were synthesized through their parent compounds 1 and 3, respectively, while 6 and 9 were obtained by their parent compound 2. In 5, the L3 anions and L1 ligands connect the Ni(II) atoms to give a 3D 3-fold interpenetrating dimondoid topology. Compound 6 exhibits a 3D three-fold interpenetrating α-Po network structure formed by L1 ligands connecting Zn-L3 sheets, while compound 7 shows a 2D (4,4) network topology with the L1 ligands connecting the Cd-L3 double chains. In compound 8, the L1 ligands linked Co-L3 chains into a 2D layer structure. Two mutual 2D layers interpenetrated in an inclined mode to generate a unique 3D architecture of 8. Compounds 9 and 10 display the same 2D layer structures with (4,4) network topologies. The effects of the N-containing ligands and the metal ions on the structures of the complexes 1-10 were discussed. In addition, the luminescent properties of compounds 2-4, 6, 7 and 9 were also investigated.