Fluorescent detection of amidinium-carboxylate and amidinium formation using anthracene-based diamidine: an application for the analysis of dicarboxylic acid binding

An anthracene-based diamidine (1) ‘turn-on’ fluorescent probe for the detection of dicarboxylic acids has been designed and synthesized. The fluorescence spectra of the diamidine 1 with carboxylic acids that showed two different fluorescence bands, which corresponded to the amidinium-carboxylate (λ_em=430-440 nm), and amidinium (λ_em=460-470 nm as a broad band) formation, were confirmed by DOSY NMR and TD-DFT calculations. These different fluorescence bands showed the binding mode of carboxylic acids and the stability of formed complexes toward diamidine 1. The fluorescent detection of amidinium-carboxylate formation using diamidine 1 was applicable to the detection of α,ω-dicarboxylic acids (C₆-C₁₃) and succeeded in the detection of α,ω-dicarboxylic acid (adipic acid) in human urine.     

Carboxylic acid recognition of diamidine having a fluorescent 1,8-diphenylanthracene unit and its detection of amidinium-carboxylate and amidinium formation

A diphenylanthracene-based diamidine (1a) fluorescent probe for the detection of dicarboxylic acids has been designed and synthesized, which has an extended π-conjugation rather than a simple anthracene ring, in order to observe highly different fluorescence wavelengths after complex formation with dicarboxylic acids. The fluorescence spectra of the mixed solution of the diamidine 1a and carboxylic acids showed two different fluorescence bands, which corresponded to the complex formation (amidinium-carboxylate formation, λ_em?=?450?nm, light blue color) and dissociated amidinium formation (λ_em?=?510?nm as a broad band, green color). The complexed and dissociated states were confirmed by DOSY NMR and TD-DFT calculations. These different fluorescence wavelengths may come from the differences in the dihedral angles between the phenyl rings at the 1,8-position and anthracene ring (difference in π-conjugation) of 1a under complex formation and dissociated amidinium formation. The proposed mechanism for the observation of the different fluorescence wavelengths (complex formation and amidinium formation) was also confirmed by the fluorescence study of diamidine 1b which causes restricted rotation of the phenyl rings by substitution of the steric methyl groups, and observed the same fluorescence spectra for the complex formation and amidinium formation (400, 420, 450?nm as a vibrational structure of anthracene ring). These fluorescence characteristics of the diamidine 1a are also applicable for the detection of α,ω?dicarboxylic acids.     

Carboxylic acid to amide hydrogen bonding. 10-Oxo-semirubins

Using their amide (and pyrrole) groups, dipyrrinones act as hydrogen bonding receptors for carboxylic acids, as found in a large number of 10-oxo-semirubins (1-6). The latter can be synthesized readily by Friedel-Crafts coupling of 9-H dipyrrinones with half-ester acid chlorides or diacid dichlorides of α,ω-dicarboxylic acids, ranging from C₂ to C₁₀. With ω-oxo-alkanoic acid chains of C₅ or ≥C₅, intramolecular hydrogen bonding is observed. With acid chains <C₅ hydrogen bonding is not observed. Uncharacteristically (for dipyrrinones), 10-oxo-dipyrrinone acids (1-6) and their corresponding esters (1e-6e) remain monomeric in hydrogen bond promoting solvents.     

Half-sandwich η-arene–ruthenium(II) complexes bearing 1-alkyl(benzyl)-imidazo[4,5-f][1,10]-phenanthroline (IP) derivatives: the effect of alkyl chain length of ligands to catalytic activity

The reaction of bromoalkanes (R–Br; (3), R=C_nH_2n+1, n=4 (a), 8 (b), 12 (c),18 (d)) and bromobenzyl derivatives (R′–Br; (4), R′=CH₂C₆H₂(CH₃)₃-2,4,6 (a); CH₂C₆H(CH₃)₄-2,3,5,6 (b); CH₂C₆(CH₃)₅ (c)) with 1H-imidazo[4,5-f][1,10]-phenanthroline (IP)(L₂) gave the corresponding 1-R-imidazo[4,5-f][1,10]-phenanthroline (IPR)(L_3a–d) and 1-R′-imidazo[4,5-f][1,10]-phenanthroline(IPR')(L_4a–c) ligands, respectively. Treatment of L_3a–d and L_4a–d with [Ru(p-cymene)Cl₂]₂ led to the formation of [Ru(p-cymene)(IPR)Cl]Cl (RuL_3a–d) and [Ru(p-cymene)(IPR′)Cl]Cl (RuL_4a–c). New ruthenium(II) complexes RuL_3a–d and RuL_4a–c were characterized by elemental analysis, FTIR, UV–visible and NMR spectroscopy. In order to understand effects of these changes on the N-substituent of imidazol on IP and how they translate to catalytic activity, these new RuL₂, RuL_3a–d and RuL_4a–c were applied in the transfer hydrogenation of ketones by 2-propanol in presence of potassium hydroxide. The activities of the catalysts were monitored by NMR and GC analysis.     

A facile approach for the synthesis of novel substituted 4H-chromenes and condensation reactions of 4H-chromenes leading to chromenopyrrolones and triazolylchromenopyrrolones

A facile method has been developed for the synthesis of 4H-chromene-3-carboxylates 3a–d by the nucleophilic substitution reaction of 2-hydroxy-2H-chromene-3-carboxylates 2a–d with triethylsilane in the presence of BF₃·O(C₂H₅)₂. Cyclocondensation of 4H-chromene-3-carboxylates 3a–d with benzylamines 4a–d afforded a series of 2,3-dihydrochromenopyrrolones 5a–p and with propargylamine afforded 2-propynyl-2,3-dihydrochromenopyrrolones 6a–d. Click reaction of 6a–d with benzyl azides 7a–d provided a series of 1H-1,2,3-triazolylmethyl-2,3-dihydrochromenopyrrolones 8a–p. Thus synthesized compounds 3a–d, 5a–p, 6a–d, and 8a–p are novel heterocyclic compounds and being reported for the first time.     

Synthesis,crystal structure and spectroscopic characterization of new neutral and cationic (η-p-cymene)–ruthenium(II) complexes with phosphine–amide ligands

The dimeric starting material [Ru(η⁶-p-cymene)(μ-Cl)Cl]₂ reacts with the phosphino-amides o-Ph₂P–C₆H₄CO–NH–R [R = ⁱPr (a), Ph (b), 4-MeC₆H₄ (c), 4-FC₆H₄ (d)] to give the mononuclear compounds 1a–d [RuCl(η⁶-p-cymene)(o-Ph₂P–C₆H₄–CO–NH–R)]Cl. The subsequent reaction of these complexes with KPF₆ produced the cationic species 2a–d [RuCl(η⁶-p-cymene)(o-Ph₂P–C₆H₄–CO–NH–R)][PF₆] in which phosphino-amides also act as rigid P,O-chelating ligands. The molecular structures of 2b–d were determined crystallographically. Amide deprotonation is achieved when complexes 2a–d were made react with 1 M aqueous solution of KOH, affording the corresponding neutral species 3a–d [RuCl(η⁶-p-cymene)(o-Ph₂P–C₆H₄–CO–N–R)] in which a P,N-coordination mode is suggested.     

A comparison of carboxypyridine isomers as sensitizers for dye-sensitized solar cells: assessment of device efficiency and stability

Three novel organic dyes (DF13A–C) carrying regioisomeric carboxypyridine anchoring groups were synthesized by means of a multistep synthetic sequence involving a Pd-catalyzed Stille coupling as the key step. The new compounds underwent full spectroscopic, electrochemical, and computational characterization, and their properties were compared with those of a reference compound endowed with a classic cyanoacrylic acid acceptor (DF15). Photovoltaic measurements showed that dye-sensitized solar cells built with dyes DF13A–C as photosensitizers yielded power conversion efficiencies corresponding to 54–63% of those obtained with the reference compound. Determination of desorption pseudo-first order rate constants indicated that isomers DF13B–C, having the nitrogen atom in neighboring position relative to the carboxylic moiety, were removed from TiO₂ more slowly than isomer DF13A or cyanoacrylic derivative DF15, suggesting a possible cooperative effect of the two functional groups on semiconductor binding: such hypothesis was supported by device stability tests carried out on transparent, larger area cells.     

Synthesis,structure and properties of a series of scorpionate oxovanadium(IV)–carboxylate complexes

A series of oxovanadium(IV) complexes: TpVO(pzH)(2,4-Cl–C₆H₃–OCH₂COO) (1), TpVO(pzH)(C₆H₅–OCH₂COO) (2), TpVO(pzH)(p-Cl–C₆H₄–COO) (3), TpVO(pzH)(3,5-NO₂–C₆H₃–COO) (4), Tp∗VO(pzH∗)(p-Cl–C₆H₄–COO) (5) and Tp∗VO(pzH∗)(p-Cl–C₆H₄–COO) · CH₃OH (6) (Tp = hydrotris(pyrazolyl)borate, pzH = pyrazole, Tp∗ = hydrotris(3,5-dimethylpyrazolyl)borate, pzH∗ = 3,5-dimethylpyrazole) were synthesized and their crystal structures were determined by X-ray diffraction. In all the complexes, the vanadium ions are in a distorted-octahedral environment with a N₄O₂ donor set. Hydrogen bonding interaction exists in each complex. Complexes 1 and 2 are hydrogen-bonded dimers. Dimeric units of 2 are connected to one another via weak inter-molecular C–H···O interactions to form a 2D network on the bc-face. In 3–6 there exist intramolecular N–H···O hydrogen bonds between the neutral pyrazole/3,5-dimethylpyrazole and the uncoordinated carboxyl oxygen atom. In addition, the catalytic activity of complex 2 in a bromination reaction in phosphate buffer with phenol red as a trap was evaluated by UV–Vis spectroscopy. Furthermore, the elemental analyses, IR spectra and thermal stabilities were recorded.     

Guignardins A–F,spirodioxynaphthalenes from the endophytic fungus Guignardia sp. KcF8 as a new class of PTP1B and SIRT1 inhibitors

Six new guignardins A–F (1–6) were isolated from the cultures of endophytic fungus Guignardia sp. KcF8 derived of a mangrove plant Kandelia candel, along with three known analogues, palmarumycins C₁ (7), BG1 (8), and JC1 (9). Compounds 2, 3, 7, and 8 showed antimicrobial activities. Compounds 5–7 exhibited significant cytotoxicities against 10 human tumor cell lines. Compound 3 also displayed significant inhibitory activity against human protein tyrosine phosphatase 1B and histone deacetylase silent information regulator T1enzymes, two key targets for the treatment of diabetes. This is the first report on the anti-PTP1B and anti-SIRT1 activities of spirodioxynaphthalenes.     

Separation and identification of three epimeric pairs of new C-glucosyl anthrones from Rumex dentatus by on-line high performance liquid chromatography–circular dichroism analysis

Six C-glucosyl anthrones were characterized as three pairs of epimers by on-line high performance liquid chromatography–circular dichroism (HPLC–CD) analysis and isolated from the roots of Rumex dentatus by column chromatography. Their structures were elucidated by mass spectrometry, nuclear magnetic spectroscopy and HPLC–CD analysis. They are 10R-C-β-d-glucosyl-10-hydroxyemodin-9-anthrone (rumejaposide E, 1) and 10S-C-β-d-glucosyl-10-hydroxyemodin-9-anthrone (rumejaposide F, 2), 10R-C-β-d-glucosylemodin-9-anthrone (rumejaposide G, 3) and 10S-C-β-d-glucosylemodin-9-anthrone (rumejaposide H, 4), 10S-C-β-d-glucosyl-10-hydroxychrysophanol-9-anthrone (cassialoin, 5) and 10R-C-β-d-glucosyl-10-hydroxychrysophanol-9-anthrone (rumejaposide I, 6). Rumejaposides F–I (2–4 and 6) were new C-glucosyl anthrones. Rumejaposide E (1) and cassialoin (5) were isolated for the first time in Rumex plants. On-line HPLC–UV–CD analysis was a useful tool for structure elucidating epimeric C-glycosides anthrones 3–6 because of the poor stability of the pure isomers (3 and 4) and the minute quantity of 5 and 6 in the mixture.     

Structurally simple chiral thioureas as chiral solvating agents in the enantiodiscrimination of α-hydroxy and α-amino carboxylic acids

C₂-Symmetrical chiral thioureas (S,S)-1 and (S,S)-2 were prepared in good yield by the reaction of 2 equiv of inexpensive (S)-1-phenylethylamine, or the corresponding naphthyl analog, with 1 equiv of thiophosgene in the presence of excess triethylamine. The presence of asymmetric elements in (S,S)-1 and (S,S)-2, and their capacity to act as receptors for anionic species via hydrogen bonding were exploited in the development of ¹H NMR spectroscopic enantiodiscrimination of chiral carboxylic acids. In particular, the diastereomeric complexes derived from thioureas (S,S)-1 and (S,S)-2 with ammonium salts of the chiral acids gave rise to well separated signals of the α-hydrogens and simple integration provides the corresponding enantiomeric ratios. Furthermore, it was observed that C_α-H in the (R) enantiomers of the chiral α-hydroxy and α-amino carboxylic acids studied in this work consistently appears downfield relative to the same signals in the (S) enantiomers.     

Synthesis of functionalized tetracene dicarboxylic imides

For the first time, a synthesis of tetracene dicarboxylic imides was established with 1,2,3,4-tetrahydrotetracene (1) instead of tetracene as the starting material. Mono-bromination of 1 by CuBr₂ followed by a Friedel-Crafts reaction, oxidation, and imidization gave the tetrahydrotetracene carboxylic imides 5a-b. Subsequent oxidative dehydrogenation of 5a-b with DDQ afforded the functional tetracene dicarboxylic imide monobromides 6a-b, which can be further functionalized to provide functional materials such as the ‘donor-acceptor’ type compounds 7a-b.     

Hypervalence in germanium compounds containing the tetracylic moiety {S(C6H3S)2O}Ge via O···Ge transannular interactions: A structural study

Treatment of R_nGeCl_4−n with {S(C₆H₃SH)₂O} (1) afforded the stable phenoxathiin-4,6-dithiolate compounds [{S(C₆H₃S)₂O}GeR₂] [n = 2; R = Et (2), Ph (3)] and [{S(C₆H₃S)₂O}GeRCl] [n = 1; R = Et (4), Ph (5)]. Treatment of GeCl₄ with 1 in benzene afforded the dichloro compound [{S(C₆H₃S)₂O}GeCl₂] (8) at 7 °C. Bromo compounds [{S(C₆H₃S)₂O}GeRBr] [R = Et (6), Ph (7)] and [{S(C₆H₃S)₂O}GeBr₂] (9) were synthesized by halogen exchange from the appropriate chloro derivative using KBr/HBr. X-ray structure determinations of diorganyl dithiolate compounds 2 and 3 revealed that germanium atom is contained in a boat–chair-shaped eight-membered central ring and displays a tetrahedral geometry. In contrast, compounds 4–6 display a boat–boat-shaped central ring with a significant intramolecular transannular O···Ge interaction. The geometry of the pentacoordinate Ge atom in these last complexes may be described as distorted trigonal bipyramidal with a 62–65% distortion displacement.     

New 3d–4f supramolecular systems constructed by [Fe(bipy)(CN)4] and partially blocked lanthanide cations

The reaction of acetonitrile (1–5) and mixed acetonitrile/water 1:1 (6–9) solutions containing the cyanide-bearing [Fe(bipy)(CN)₄]⁻ building block (bipy = 2,2′-bipyridine) and the partially blocked [Ln(bpym)]³⁺ cation (Ln = lanthanide trivalent cation and bpym = 2,2′-bipyrimidine) has afforded two new families of 3d–4f supramolecular assemblies of formula [Ln(bpym)(NO₃)₂(H₂O)₃][Fe(bipy)(CN)₄] · H₂O · CH₃CN [Ln = Sm (1), Gd (2), Tb (3), Dy (4) and Ho (5)] and [Ln(bpym)(NO₃)₂(H₂O)₄][Fe(bipy)(CN)₄] [Ln = Pr (6), Nd (7), Sm (8), Gd (9)]. They crystallize in the P2₁/c (1–5) and P2/c (6–9) space groups and their structures are made up of [Fe(bipy)(CN)₄]⁻ anions (1–9) and [Ln(bpym)(NO₃)₂(H₂O)_n]⁺ cations [n = 3 (1–5) and 4 (6–9)] with uncoordinated water and acetonitrile molecules (1–5) which are interlinked through an extensive network of hydrogen bonds and π–π stacking into three-dimensional motifs. Both families have in common the occurrence of the low-spin iron(III) unit [Fe(bipy)(CN)₄]⁻ where two bipy–nitrogen and four cyanide–carbon atoms build a somewhat distorted octahedral surrounding around the iron atom [Fe–N = 1.980(3)–1.988(3) Å (1–5) and 1.988(2)–1.992(2) Å (6–9); Fe–C = 1.904(5)–1.952(4) Å (1–5) and 1.911(2)–1.948(3) Å (6–9)]. The main structural difference between both families concerns the environment of the lanthanide atom which is nine- (1–5)/10-coordinated (6–9) with a chelating bpym, two bidentate nitrate and three (1–5)/four (6–9) water molecules building distorted monocapped (1–5)/bicapped (6–9) square antiprisms. This different lanthanide environment is at the origin of the different hydrogen bonding pattern of the two families of compounds.     

Pyrenyl-appended imidazolium receptor for selective fluorescence sensing of oxalic acid

A new fluorescent imidazolium-based cholestane receptor 4 bearing a pyrene moiety was synthesized. The binding ability of 4 toward various dicarboxylic acids was examined by UV-vis and fluorescence spectroscopy. Receptor 4 showed the highest binding constant for oxalic acid among all the tested dicarboxylic acids (K_a = 5.06 × 10⁴ M⁻¹). Oxalic acid formed a complex with 4 with a 1:2 ratio in ethanol.     

Synthesis of stereopure acyclic 1,5-dimethylalkane chirons: building blocks of highly methyl-branched natural products

An efficient synthetic method towards stereopure acyclic 1,5-dimethylalkane building blocks from methyl (2R)-3-hydroxy-2-methylpropionate (R)-1 (>99% ee) and methyl (2S)-3-hydroxy-2-methylpropionate (S)-1 (>99% ee) through a series of chemical transformations, including Julia–Kocienski olefination and diimide reduction, is described. Through this strategy, two fragments of β-d-mannosyl phosphomycoketide (C₃₂-MPM) and four stereopure 1,5-dimethylalkane C₁₀ chirons are prepared. These C₃₂-MPM fragments and C₁₀ chirons have shown great potential application as building blocks for the synthesis of highly methyl-branched natural products containing chiral oligoisoprenoid-like chains.     

Chiral self-assembly of triorganotin complexes: Syntheses, characterization, crystal structures and antitumor activity of organotin(IV) complexes containing (R)-(+)-methylsuccinic acid, (S)-(+)-methylglutaric acid and l-(−)-malic acid ligands

Six new chiral triorganotin(IV) complexes, {(R₃Sn)₂[C₃H₆(COO)₂]}_n (R = Me: 1; Bu: 2), {(R₃Sn)₂[C₄H₈(COO)₂]}_n (R = Me: 3; Bu: 4), and {(R₃Sn)₂[C₂H₄O(COO)₂]}_n (R = Me: 5; Bu: 6) have been prepared by treatment of (R)-(+)-methylsuccinic acid, (S)-(+)-methylglutaric acid and l-(−)-malic acid, with the corresponding R₃SnCl (R = Me, Bu) and sodium ethoxide in methanol. All the complexes were characterized by elemental analysis, FT-IR, NMR (¹H, ¹³C, ¹¹⁹Sn) spectroscopy and TGA. Except for 3, all of the complexes were also characterized by X-ray crystallography. The structural analyses reveal that complexes 1 and 5 have 2D network structures in which (R)-(+)-methylsuccinic acid and l-(−)-malic acid act as tetradentate ligands coordinated to trimethyltin(IV) ions. Complexes 2 and 4 have 3D metal-organic framework structures in which the deprotoned acids serve as tetradentate ligands. Complex 6 adopts a 1D zigzag chain structure and forms a 2D supramolecular framework through intermolecular C-H?O interactions. In addition, the antitumor activities of complexes 1-6 have been studied. We also have measured the specific rotation of the chiral dicarboxylic acids and the organotin derivatives.     

Cytosporins F–K,new epoxyquinols from the endophytic fungus Pestalotiopsis theae

Chemical investigation of an endophytic fungus, Pestalotiopsis theae, isolated from the leaves of Turraeanthus longipes (Meliaceae) collected in Cameroon, resulted in the isolation of six new epoxyquinols, cytosporins F–K (2–7), together with the known cytosporin D (1). The structures of the new compounds were unambiguously determined by analysis of the 1D, 2D NMR, and HRMS spectra. Cytosporins G–K (3–7) are the first cytosporins with a hydroxyl substituted C₇ side chain, while cytosporins F–I (2–5) contain a 13-acetoxyl group that was not reported previously. A plausible biosynthetic pathway for the cytosporin derivatives is proposed.     

Colletotrichumine A,a novel indole–pyrazine alkaloid with an unprecedented C16N3-type skeleton from cultures of Colletotrichum capsici

Chemical investigations on the EtOAc extract of the cultures of Colletotrichum capsici afforded a novel indole–pyrazine alkaloid embodying a structurally unique C₁₆N₃-type skeleton, colletotrichumine A (1), together with five known steroids (2–6). Their structures were elucidated by spectroscopic analysis and that of 1 was further confirmed by a single-crystal X-ray diffraction method. The plausible biogenetic pathway of 1 was also discussed.