Artificial ion channel formed by cucurbit[n]uril derivatives with a carbonyl group fringed portal reminiscent of the selectivity filter of K+ channels

Novel artificial ion channels (1 and 2) based on CB[n] (n = 6 and 5, respectively) synthetic receptors with carbonyl-fringed portals (diameter 3.9 and 2.4 A, respectively) can transport proton and alkali metal ions across a lipid membrane with ion selectivity. Fluorometric experiments using large unilamellar vesicles showed that 1 mediates proton transport across the membranes, which can be blocked by a neurotransmitter, acetylcholine, reminiscent of the blocking of the K+ channels by polyamines. The alkali metal ion transport activity of 1 follows the order of Li+ > Cs+ approximately Rb+ > K+ > Na+, which is opposite to the binding affinity of CB[6] toward alkali metal ions. On the other hand, the transport activity of 2 follows the order of Li+ > Na+, which is also opposite to the binding affinity of 2 toward these metal ions, but virtually no transport was observed for K+, Rb+, and Cs+. It is presumably because the carbonyl-fringed portal size of 2 (diameter 2.4 A) is smaller than the diameters of these alkali metal ions. To determine the transport mechanism, voltage-clamp experiments on planar bilayer lipid membranes were carried out. The experiments showed that a single-channel current of 1 for Cs+ transport is approximately 5 pA, which corresponds to an ion flux of approximately 3 x 107 ions/s. These results are consistent with an ion channel mechanism. Not only the structural resemblance to the selectivity filter of K+ channels but also the remarkable ion selectivity makes this model system unique.     

OFF-OFF-ON switching of fluorescence and electron transfer depending on stepwise complex formation of a host ligand with guest metal ions

Stepwise complex formation is observed between 2,3,5,6-tetrakis(2-pyridyl)pyrazine (TPPZ) and a series of metal ions (M(n+) = Sc3+, Y3+, Ho3+, Eu3+, Lu3+, Nd3+, Zn2+, Mg2+, Ca2+, Ba2+, Sr2+, Li+), where TPPZ forms a 2:1 complex [(TPPZ)2-M(n+)] and a 1:1 complex [TPPZ-M(n+)] with Mn+ at low and high concentrations of metal ions, respectively. The fluorescence intensity of TPPZ begins to increase at high concentrations of metal ions, when the 2:1 (TPPZ)2-M(n+) complex is converted to the fluorescent 1:1 TPPZ-M(n+) complex. This is regarded as an "OFF-OFF-ON" fluorescence sensor for metal ions depending on the stepwise complex formation between TPPZ and metal ions. The fluorescence quantum yields of the TPPZ-M(n+) complex vary depending on the metal valence state, in which the fluorescence quantum yields of the divalent metal complexes (TPPZ-M2+) are much larger than those of the trivalent metal complexes (TPPZ-M3+). On the other hand, the binding constants of (TPPZ)2-M(n+) (K1) and TPPZ-M(n+) (K2) vary depending on the Lewis acidity of metal ions (i.e., both K1 and K2 values increase with increasing Lewis acidity of metal ions). Sc3+, which acts as the strongest Lewis acid, forms the (TPPZ)2-Sc3+ and TPPZ-Sc3+ complexes stoichiometrically with TPPZ. In such a case, "OFF-OFF-ON" switching of electron transfer from cobalt(II) tetraphenylporphyrin (CoTPP) to O2 is observed in the presence of Sc3+ and TPPZ depending on the ratio of Sc3+ to TPPZ. Electron transfer from CoTPP to O2 occurs at Sc3+ concentrations above the 1:2 ratio ([Sc3+]/[TPPZ]0 > 0.5), when the (TPPZ)2-Sc3+ complex is converted to the TPPZ-Sc3+ complex and TPPZ-(Sc3+)2, which act as promoters of electron transfer (ON) by the strong binding of O2*- with Sc3+. In sharp contrast, no electron transfer occurs without metal ion (OFF) or in the presence at Sc3+ concentrations below the 1:2 ratio (OFF), when the (TPPZ)2-Sc3+ complex has no binding site available for O2*-.     

A copper(II) ion-selective on-off-type fluoroionophore based on zinc porphyrin-dipyridylamino

A new copper(II) fluorescent sensor 5,10,15,20-tetra((p-N,N-bis(2-pyridyl)amino)phenyl)porphyrin zinc (1) has been designed and synthesized by the Ullmann-type condensation of bromoporphyrin zinc with 2,2'-dipyridylamine (dpa) under copper powder as a catalyst as well as with K2CO3 as the base in a DMF solution. It consists of two separately functional moieties: the zinc porphyrin performs as a fluorophore, and the dpa-linked-to-zinc porphyrin acts as a selected binding site for metal ions. It displays a high selectivity and antidisturbance for the Cu2+ ion among the metal ions examined (Na+, Mg2+, Cr3+, Mn2+, Fe2+, Co2+, Ni2+, Cu2+, Ag+, Zn2+, Cd2+, Hg2+, and Fe3+) and exhibits fluorescence quenching upon the binding of the Cu2+ ion with an "on-off"-type fluoroionophoric switching property. The detection limit is found to be 3.3 x 10(-7) M (3s blank) for Cu2+ ion in methanol solution, and its fluorescence can be revived by the addition of EDTA disodium solution. The design strategy and remarkable photophysical properties of sensor 1 help to extend the development of fluorescent sensors for metal ions.     

Favorable pendant-amino metal chelation in VX nerve agent model systems

We have performed DFT computational studies [B3LYP, 6-31+G] to obtain metal ion coordination isomers of VX-Me [MeP(O)(OMe)(SCH2CH2NMe2)], a model of two of the most lethal nerve agents: VX [MeP(O)(OEt)(SCH2CH2N(iPr)2)] and Russian-VX [MeP(O)(OCH2CHMe2)(SCH2CH2N(Et)2)]. Our calculations involved geometry optimizations of the neutral VX-Me model as well as complexes with H+, Li+, Na+, K+, Be2+, Mg2+, and Ca2+ that yielded 2-8 different stable chelation modes for each ion that involved mainly mono- and bidentate binding. Importantly, our studies revealed that the [O(P),N] bidentate binding mode, long thought to be the active mode in differentiating the hydrolytic path of VX from other nerve agents, was the most stable for all ions studied here. Binding energy depended mainly on ionic size as well as charge, with binding energies ranging from 364 kcal mol(-1) for Be2+ to 33 kcal mol(-1) for K+. Furthermore, calculated NMR shifts for VX-Me correlate to experimental values of VX.     

气相中碱金属离子与丝氨酸、亮氨酸和赖氨酸五肽复合物的裂解反应简

为了探索金属离子对含有不同侧链的多肽气相解离的影响,采用质谱法研究了碱金属离子Li+,Na+,K+,Rb+和Cs+分别与丝氨酸、亮氨酸和赖氨酸五肽(分别简写为S5,L5和K5)形成的复合物的裂解反应. 质谱定性结果表明,5种碱金属离子均可以在气相中与丝氨酸、亮氨酸和赖氨酸五肽形成配合比为1：1 和2：1的非共价复合物;竞争反应结果表明,随着碱金属离子半径的增加,它们与3种五肽的结合能力逐渐减弱. 质谱定量结果表明,K+与丝氨酸、亮氨酸和赖氨酸五肽复合物的结合常数分别为8.94×104,2.83×104和2.50×103 L/mol,表明K+与五肽复合物的结合强度按照丝氨酸、亮氨酸和赖氨酸的顺序依次减小. 含不同侧链碱金属离子-五肽复合物的碰撞诱导解离结果表明,复合物的碎裂主要发生在骨架上,丝氨酸五肽复合物最易碎裂,亮氨酸五肽复合物其次,赖氨酸五肽复合物则较难碎裂,且3种复合物的侧链断裂情况也呈现明显差异. 此外,研究了Na+与亮氨酸五肽复合物所产生的碎片离子,分析了不同离子之间的来源关系,并以Dunbar的复合物理论模型为依据,推测在碎裂过程中,碱金属离子可能向五肽的碳端或氮端偏移. 质谱碎片分析结果表明,在2：1的非共价复合物中,第一个碱金属离子与五肽上4个酰胺键的羰基结合,第二个碱金属离子与五肽的羧基氧原子结合.     

金属离子对齐多夫定与牛血清白蛋白结合作用的影响

用荧光光谱法和紫外分光光度法研究了水溶液(Tris-HCl缓冲溶液, pH 7.1)中齐多夫定(ZDV)与牛血清白蛋白(BSA)的结合作用及三种金属离子(Cu2+, Mg2+, Zn2+)对其的影响. 结果表明: 齐多夫定及金属离子均导致BSA的内源荧光猝灭, 猝灭机制均为静态猝灭; 齐多夫定与BSA间存在较强结合作用, 热力学参数△H和△S分别为-10.2 kJ·mol-1和77.5 J·mol-1·K-1 (298 K), 表明其结合力以静电作用力为主; 298 K下结合常数、结合位点数和结合距离分别为6.92×105 L·mol-1、1.18和2.28 nm; 温度升高结合常数和结合位点数减小. 三种金属离子均导致ZDV与BSA的结合常数减小, 结合距离增大.     

特烯合成中金属子的模板效应

本文报道了以乙醇为溶剂, 呋喃与丙酮在浓盐酸催化下缩合生成2,2,7,7,12,12,17,17-八甲基-21,22,23,24-四氧 特烯, 采用固定反应时间, 比较产率的方法, 研究Sn^2^+, Sb^3^+, Al^3^+, Zn^2^+等金属离子对合成 特烯的模板效应的影响.     

Triazole-modified calix[4]crown as a novel fluorescent on-off switchable chemosensor

A novel fluorescent on-off switchable chemosensor 1 with two different types of cationic binding sites is synthesized, which is composed of a triazole-modified calix[4]crown in the 1,3-alternate conformation. Among 15 metal ions examined, the fluorescence of 1 was strongly quenched by Hg2+, Cu2+, Cr3+, and Pb2+; however, the revival of emission from the strongly quenched 1.Pb2+ complex was achievable by the addition of K+, Ba2+, or Zn2+ ions. Thus, metal ion exchange can trigger an on-off switchable fluorescent chemosensor.     

A joint experimental and theoretical study of cation-pi interactions: multiple-decker sandwich complexes of ferrocene with alkali metal ions (Li+, Na+, K+, Rb+, Cs+)

A systematic study of cation-pi interactions between alkali metal ions and the cyclopentadienyl ring of ferrocene is presented. The alkali metal (Li+, Na+, K+, Rb+, Cs+) salts of the ditopic mono(pyrazol-1-yl)borate ligand [1,1'-fc(BMe2pz)2]2- crystallize from dimethoxyethane as multiple-decker sandwich complexes with the M+ ions bound to the pi faces of the ferrocene cyclopentadienyl rings in an eta5 manner (fc = (C5H4)2Fe; pz = pyrazolyl). X-ray crystallography of the lithium complex reveals discrete trimetallic entities with each lithium ion being coordinated by only one cyclopentadienyl ring. The sodium salt forms polyanionic zigzag chains where each Na+ ion bridges the cyclopentadienyl rings of two ferrocene moieties. Linear columns [-CpR-Fe-CpR-M+-CpR-Fe-CpR-M+-](infinity) (R = [-BMe2pz]-) are established by the K+, Rb+, and Cs+ derivatives in the solid state. According to DFT calculations, the binding enthalpies of M+-eta5(ferrocene) model complexes are about 20% higher as compared to the corresponding M+-eta6(benzene) aggregates when M+ = Li+ or Na+. For K+ and Rb+, the degree of cation-pi interaction with both aromatics is about the same. The binding sequence along the M+-eta5(ferrocene) series follows a classical electrostatic trend with the smaller ions being more tightly bound.     

金属离子与腺嘌呤异构体复合物的稳定性

在B3LYP/6-311++G**//6-31+G*基组水平上结合PCM模型系统的优化了气相和液相环境中14种腺嘌呤异构体与四种金属离子(Na+,K+,Mg2+,Ca2+)形成的132个稳定复合物。通过能量对比,得到了所有复合物异构体在气液两相中的稳定性顺序及不同金属离子与同一异构体形成的复合物的能量排序,首次给出了液相中这些不同金属离子复合物的最稳定结构。结果发现溶剂效应导致了液相中的复合物稳定性顺序与气相中的相比发生了很大变化;同一异构体与不同金属离子形成的复合物其稳定性在排序中也变化很大。对于这些变化,本文分别从金属离子与腺嘌呤的复合物在气相中的结合能(EBE)及在液相中的溶质溶剂相互作用能(Epol)能等方面进行了系统的阐述     

Direct NMR detection of alkali metal ions bound to G-quadruplex DNA

We describe a general multinuclear (1H, 23Na, 87Rb) NMR approach for direct detection of alkali metal ions bound to G-quadruplex DNA. This study is motivated by our recent discovery that alkali metal ions (Na+, K+, Rb+) tightly bound to G-quadruplex DNA are actually "NMR visible" in solution (Wong, A.; Ida, R.; Wu, G. Biochem. Biophys. Res. Commun. 2005, 337, 363). Here solution and solid-state NMR methods are developed for studying ion binding to the classic G-quadruplex structures formed by three DNA oligomers: d(TG4T), d(G4T3G4), and d(G4T4G4). The present study yields the following major findings. (1) Alkali metal ions tightly bound to G-quadruplex DNA can be directly observed by NMR in solution. (2) Competitive ion binding to the G-quadruplex channel site can be directly monitored by simultaneous NMR detection of the two competing ions. (3) Na+ ions are found to locate in the diagonal T4 loop region of the G-quadruplex formed by two strands of d(G4T4G4). This is the first time that direct NMR evidence has been found for alkali metal ion binding to the diagonal T4 loop in solution. We propose that the loop Na+ ion is located above the terminal G-quartet, coordinating to four guanine O6 atoms from the terminal G-quartet and one O2 atom from a loop thymine base and one water molecule. This Na+ ion coordination is supported by quantum chemical calculations on 23Na chemical shifts. Variable-temperature 23Na NMR results have revealed that the channel and loop Na+ ions in d(G4T4G4) exhibit very different ion mobilities. The loop Na+ ions have a residence lifetime of 220 micros at 15 degrees C, whereas the residence lifetime of Na+ ions residing inside the G-quadruplex channel is 2 orders of magnitude longer. (4) We have found direct 23Na NMR evidence that mixed K+ and Na+ ions occupy the d(G4T4G4) G-quadruplex channel when both Na+ and K+ ions are present in solution. (5) The high spectral resolution observed in this study is unprecedented in solution 23Na NMR studies of biological macromolecules. Our results strongly suggest that multinuclear NMR is a viable technique for studying ion binding to G-quadruplex DNA.     

金属离子与氨羧类螯合配体的键合特性研究

利用前沿色谱法,通过Cu2+、Ni2+和Co2+与螯合配体IDA 键合的准确度(R2>0.98)与精密度(RSD <5%)实验,研究了前沿色谱法同时测定络合稳定常数KML与总键合位点数Λ0值的可行性.为了进一步证明前沿色谱法的普适性,以Cu2+、Ni2+和Co2+为代表,在3种键合缓冲体系(NaAc-HAc、Na-PB、Tris-HCl)中,考察了金属离子在3种氨羧类螯合配体(IDA、Asp、Glu)上络合稳定常数KML的变化规律.结果表明,螯合配体对金属离子键合强度遵循IDA>Asp>Glu;金属离子对螯合配体键合强度遵循Cu2+>Ni2+>Co2+;3种键合缓冲体系中,NaAc-HAc键合效果最好.按照M06/6-311++G (d, p) 方法对螯合配体与金属离子的结合能(ΔE)与吉布斯自由能(ΔG)进行相关的量子计算.根据ΔE 与ΔG 的大小,从理论上推测出螯合配体与金属离子的键合规律,此规律与上述实验结果基本相符.本研究为金属离子与螯合配体间键合参数的求取提供了有效的方法和手段,从而为今后提高IMAC柱的稳定性,解决固定金属亲和柱在应用过程中尤其是竞争洗脱过程中金属离子的流失问题奠定了良好的基础.     

Influence of halogenation on the properties of uracil and its noncovalent interactions with alkali metal ions. Threshold collision-induced dissociation and theoretical studies

The influence of halogenation on the properties of uracil and its noncovalent interactions with alkali metal ions is investigated both experimentally and theoretically. Bond dissociation energies of alkali metal ion-halouracil complexes, M+(XU), are determined using threshold collision-induced dissociation techniques in a guided ion beam mass spectrometer, where M+ = Li+, Na+, and K+ and XU = 5-fluorouracil, 5-chlorouracil, 6-chlorouracil, 5-bromouracil, and 5-iodouracil. The structures and theoretical bond dissociation energies of these complexes are determined from ab initio calculations. Theoretical calculations are also performed to examine the influence of halogenation on the acidities, proton affinities, and Watson-Crick base pairing energies. Halogenation of uracil is found to produce a decrease in the proton affinity, an increase in the alkali metal ion binding affinities, an increase in the acidity, and stabilization of the A::U base pair. In addition, alkali metal ion binding is expected to lead to an increase in the stability of nucleic acids by reducing the charge on the nucleic acid in a zwitterion effect as well as through additional noncovalent interactions between the alkali metal ion and the nucleobases.     

Quantitative evaluation of Lewis acidity of metal ions derived from the g values of ESR spectra of superoxide: metal ion complexes in relation to the promoting effects in electron transfer reactions

The g values of ESR spectra of superoxide-metal ion complexes (O2(*-)-Mn+, n = 1, 2, 3) are determined in acetonitrile at 143 K. The binding energies (deltaE) of metal ions with O2*- have been evaluated from deviation of the gzz values from the free spin value. The deltaE values are well correlated with the catalytic reactivities of metal ions in electron transfer from cobalt(II) tetraphenylporphyrin to O2 and p-benzoquinone, which does not occur in the absence of metal ions under otherwise the same experimental conditions. The deltaE values can thereby be used as the first quantitative measure for Lewis acidity of metal ions in relation with the catalytic reactivities in electron transfer reactions.     

微量热法研究碱土金属离子与18-冠-6结合的热力学常数

通过微量热法研究了18-冠-6与碱土金属离子结合过程. 根据反应后的平衡关系, 求出反应平衡常数、焓、熵和吉布斯自由能变化. 金属离子由原来溶剂化的游离态变为与18-冠-6以静电力结合, 体系的能量降低, 放出了热量;同时由原来的自由运动变为被限制在冠醚孔穴内, 自由度减小, 熵值减少. 冠醚内的氧原子能够紧紧地围绕着半径为138 pm的Ba2+, 而离子半径较小的其它离子, 围绕得不够紧密, 与氧原子之间的作用力变小. 从Be2+、Mg2+、Ca2+、Sr2+到Ba2+, 与冠醚结合的放热增加, 平衡常数也逐渐增大.     

Effect of solvation on ion binding to imidazole and methylimidazole

Quantum chemical [MP2(FULL)/6-311++G-(d,p)] calculations are done on the binding of hydrated Li(+), Na(+), K(+), Mg(2+), Cu(+), and Zn(2+) metal ions with biologically relevant heteroaromatics such as imidazole and methylimidazole. The computed interaction energies are found to be in good agreement with the available experimental data. The effect of hydration on hydrogen bonding has been studied in detail and it shows that the hydrogen bond strength between H(2)O···H-N(1) substantially increases in the presence of metal ions. The present study quantifies the cooperativity between M···imidazole (M = Li(+), Na(+), K(+), Mg(2+), Cu(+), and Zn(2+)) and N(1)-H···OH(2) interactions. Topological atoms in molecules (AIM) analysis and charge analysis support the variation in hydrogen-bonding strength and the variation in M···imidazole binding strength. Effect of hydration on N(1)-H stretching frequency is studied, and it shows a clear shift in the stretching frequency after sequential hydration of metal ion as well as the N(1) of imidazole. The present study provides a detailed account on the biologically important M-histidine motif interaction with metal ions, where histidine is modeled by imidazole and methylimidazole.     

UV-vis spectroscopic study of interaction of metal ions with the E(T)(30) dye involving micellar media

Interaction between 3d-transition metal ions (Mn2+, Fe2+, Fe3+, Co2+, Ni2+, Cu2+ and Zn2+) and the E(T)(30) dye, 2,6-diphenyl-4-(2,4,6-triphenyl 1-pyridino)phenolate in aqueous medium have been studied by distributing the dye between the aqueous and micellar phase formed by cationic surfactant cetyltrimethylammonium bromide(CTAB). Values of equilibrium constant K for the dye-metal ion interaction and the partition coefficient of the dye between the micellar and the aqueous phase have been determined. K values show a systematic correlation with ionic potential of metal ions.     

Speciation of cyclo(Pro-Gly)<Subscript>3</Subscript> and its divalent metal-ion complexes by electrospray ionization mass spectrometry

Electrospray ionization mass spectrometry (ESI-MS) was used to study the binding of selected group II and divalent transition-metal ions by cyclo(Pro-Gly)3 (CPG3), a model ion carrier peptide. Metal salts (CatXn) were combined with the peptide (M) at a molar ratio of 1:10 M/Cat in aqueous solvents containing 50% vol/vol acetonitrile or methanol and 1 or 10 mM ammonium acetate (NH4Ac). Species detected include [M+H]+, [M+Cat-H]+, [M2+Cat]2+, [M+Cat+Ac]+, and [M+Cat+X]+. The relative stabilities of complexes formed with different cations (Mg2+, Ca2+, Sr2+, Mn2+, Co2+, Ni2+, Cu2+, and Zn2+) were determined from the abundance of 1:1 and 2:1 M/Cat species relative to that of the unbound peptide. The largest metal ions (Ca2+, Sr2+, and Mn2+) formed the most stable complexes. Reducing the buffer concentration increased the overall extent of metal binding. Results show that the binding specificity of CPG3 depends upon the size of the metal ion and its propensity for electrostatic interaction with oxygen atoms. Product ion tandem mass spectrometry of [M+H]+ and [M+Cu-H]+ confirmed the cyclic structure of the peptide, although the initial site(s) of metal attachment could not be determined.     

Empirical force fields for biologically active divalent metal cations in water

We have presented a strategy for deriving ion-water van der Waals (vdW) parameters that implicitly include the microscopic solvent molecular effects around the ion. The strategy can be used to obtain vdW parameters for metal cations of the same formal charge and known experimental hydration free energies. In this work, it was applied to derive the vdW parameters for 24 divalent metal ions with measured hydration free energies ranging from -300 to -572 kcal/mol, coordination numbers (CNs) from 4 to 15, and ion-O (water) distances from 1.67 to 2.90 angstroms. The strategy used to derive the vdW parameters employs (1) a numerical procedure that links the coupling parameter used in free energy simulations with the experimental hydration free energies and (2) the first-shell CNs and structure for the entire series of divalent cations. One of the parameter sets obtained (referred to as MWc) simultaneously reproduces the observed (i) relative hydration free energies, (ii) first-shell CNs, and (iii) average ion-water distances of all the dications studied. In particular, the MWc parameters reproduce the observed (i) decrease in the CN from 6 for Cu2+ to 4 for Be2+, (ii) no change in the CN of 6 for dications with hydration free energies between those of Cu2+ and Cd2+, and (iii) an expansion of the CN from 6 for Cd2+ to 9.5 for Ba2+. The ion-water parameters derived herein represent a first step in the simulations of metalloproteins, which will also require potential energy functions incorporating polarizability, charge transfer, and other electronic effects to accurately model the protein-metal interactions in aqueous solution.