Solvent effects on the photodissociation of formic acid: a theoretical study

Photodissociation of aqueous formic acid has been investigated with the CASSCF, DFT, and MR-CI methods. Solvent effects are considered as a combination of the hydrogen-bonding interaction from explicit H2O molecules and the effects from the bulk surrounding H2O molecules using the polarizable continuum model. It is found that the hydrogen-bonding effect from the explicit water in the complex is the major factor to influence properties of aqueous formic acid, while the bulk surrounding H2O molecules has a noticeable influence on the structures of the complex. The direct C-O bond fission along the S1 pathway is predicted to be an important channel upon photolysis of aqueous formic acid at 200 nm, which is consistent with experimental observation that aqueous formic acid dissociates predominantly into fragments of HCO and OH. The existence of a dark channel upon photolysis of aqueous formic acid at 200 nm is assigned as fast relaxation from the S1 Franck-Condon geometry to the T1/S1 intersection and subsequent S1-->T1 intersystem crossing process. S1-->S0 internal conversion followed by molecular elimination to CO+H2O is the most probable primary process for formation of carbon monoxide, which was observed with considerable yield upon photolysis of aqueous formic acid at 253.7 nm.     

Characterization of the relevant excited states in the photodissociation of CO-ligated hemoglobin and myoglobin

The relevant excited states in the rapid photodissociation process of hemoglobin and myoglobin are examined by means of time-dependent density functional theory. Our calculations clearly show that the photodissociation is mediated by two repulsive states (5 A' ' and 3 A') which cross the lowest excited states (1 A' and 1 A' ') at an internuclear Fe-C distance of about 2 A. Electron detachment/attachment density plots nicely explain the repulsive nature of the 5 A' ' and 3 A' states.     

Experimental and theoretical study of the photodissociation of bromo-3-fluorobenzene

The UV photodissociation of bromo-3-fluorobenzene under collisionless conditions has been studied as a function of the excitation wavelength between 255 and 265 nm. The experiments were performed using ultrafast pump-probe laser spectroscopy. To aid in the interpretation of the results, it was necessary to extend the theoretical framework substantially compared to previous studies, to also include quantum dynamical simulations employing a two-dimensional nuclear Hamiltonian. The nonadiabatic potential energy surfaces (PES) were parameterized against high-level MS-CASTP2 quantum chemical calculations, using both the C-Br distance and the out-of-plane bending of the bromine as nuclear parameters. We show that the wavelength dependence of the photodissociation via the S0-->1pipi*-->1pisigma* channel, accessible with a approximately 260 nm pulse, is captured in this model. We thereby present the first correlation between experiments and theory within the quantitative regime.     

UV photodissociation of ethylamine cation: a combined experimental and theoretical investigation

Direct current (DC) slice imaging of state-selected ions is combined with high-level ab initio calculations to give insight into reaction pathways, dynamics, and energetics for ethylamine cation photodissociation at 233 nm. These reaction pathways are of interest for understanding the rich chemistry of Titan's ionosphere recently revealed by the Cassini mission. The result for the H-loss product has a bimodal translational energy distribution, indicating two distinct H-loss pathways: these are assigned to triplet CH(3)CH(2)NH(+) product ions and the singlet CH(3)CHNH(2)(+) species. The distribution shows a modest fraction of energy available in translation and is consistent with barrierless dissociation from the ground state. HCNH(+) formation is observed as the dominant channel and exhibits a bimodal translational energy distribution with the faster component depicting a significant angular anisotropy. This suggests a direct excited-state decay pathway for this portion of the distribution. We have also observed the H + H(2) loss product as a minor secondary dissociation channel, which correlates well with the formation of CH(2)CNH(2)(+) ion with an exit barrier.     

Product branching ratios in photodissociation of phenyl radical: a theoretical ab initio/Rice-Ramsperger-Kassel-Marcus study

Ab initio CCSD(T)/CBS//B3LYP/6-311G** calculations of the potential energy surface for possible dissociation channels of the phenyl radical are combined with microcanonical Rice-Ramsperger-Kassel-Marcus calculations of reaction rate constants in order to predict statistical product branching ratios in photodissociation of c-C(6)H(5) at various wavelengths. The results indicate that at 248 nm the photodissociation process is dominated by the production of ortho-benzyne via direct elimination of a hydrogen atom from the phenyl radical. At 193 nm, the statistical branching ratios are computed to be 63.4%, 21.1%, and 14.4% for the o-C(6)H(4) + H, l-C(6)H(4) ((Z)-hexa-3-ene-1,5-diyne) + H, and n-C(4)H(3) + C(2)H(2) products, respectively, in a contradiction with recent experimental measurements, which showed C(4)H(3) + C(2)H(2) as the major product. Although two lower energy pathways to the i-C(4)H(3) + C(2)H(2) products are identified, they appeared to be kinetically unfavorable and the computed statistical branching ratio of i-C(4)H(3) + C(2)H(2) does not exceed 1%. To explain the disagreement with experiment, we optimized conical intersections between the ground and the first excited electronic states of C(6)H(5) and, based on their structures and energies, suggested the following photodissociation mechanism at 193 nm: c-C(6)H(5) 1 → absorption of a photon → electronically excited 1 → internal conversion to the lowest excited state → conversion to the ground electronic state via conical intersections at CI-2 or CI-3 → non-statistical decay of the vibrationally excited radical favoring the formation of the n-C(4)H(3) + C(2)H(2) products. This scenario can be attained if the intramolecular vibrational redistribution in the CI-2 or CI-3 structures in the ground electronic state is slower than their dissociation to n-C(4)H(3) + C(2)H(2) driven by the dynamical preference.     

A theoretical study on the photodissociation of C3O2

The photodecomposition of C₃O₂ into C₂O and CO is studied with the ab initio MO calculation. It is found that, starting from the second excited state of C₃O₂ (_u), the ground-state C₂O (triplet) is yielded through the bent dissociation. The stable structure of the excited triplet state of C₃O₂ as an intermediate is also demonstrated.     

The photodissociation of ozone in the Hartley band: a theoretical analysis

Three-dimensional diabatic potential energy surfaces for the lowest four electronic states of ozone with 1A' symmetry-termed X, A, B, and R-are constructed from electronic structure calculations. The diabatization is performed by reassigning corresponding energy points. Although approximate, these diabatic potential energy surfaces allow one to study the uv photodissociation of ozone on a level of theory not possible before. In the present work photoexcitation in the Hartley band and subsequent dissociation into the singlet channel, O3X+hnu-->O(1D)+O2(a 1Deltag), are investigated by means of quantum mechanical and classical trajectory calculations using the diabatic potential energy surface of the B state. The calculated low-resolution absorption spectrum as well as the vibrational and rotational state distributions of O2(a 1Deltag) are in good agreement with available experimental results.     

Pyridyne radical cations produced by photodissociation of Mg*+ (multifluoro-pyridine) complexes: a combined experimental and theoretical study

Gas phase complexes Mg*+ (2,6-difluoropyridine) (1) and Mg*+ (pentafluoropyridine) (2) have been subjected to photodissociation in the spectral range of approximately 230-440 nm. Except for the evaporative photofragment Mg*+ , the primary photoproduct for is C(5)H(3)N*(+), which is associated with the rupture of two C-F bonds by the photoexcited Mg*+ , forming very stable MgF(2). In contrast, the direct loss of MgF(+) is more favorable for due to fluorine substitution. Given enough energy, C(5)H(3)N*(+) can undergo decomposition to form C(4)H(2)*(+) and HCN. These results are very different from those for Mg*+ (2-fluoropyridine), highlighting the significance of the additional F at C6 of and . Density functional theory (DFT) calculations have been employed to examine the geometries and energetics of the complexes as well as relevant reaction mechanisms. All of the complexes feature the direct attachment of Mg*+ to the N atom. The key intermediate is found to be FMg(+) (C(5)H(x)F(4-x)N) (x = 3 or 0), which can lead to the formation of MgF(+) directly or MgF(2) through activation of another C-F bond adjacent to N, producing the pyridyne radical cations. However, hydrogen-transfer prior to the rupture of the second C-F bond followed by ring-opening of C(5)H(3)N*(+) may result in the formation of chain forms of C(5)H(3)N*(+). The influence of the fluorine substitution on the competition of the two routes have been demonstrated.     

A theoretical study on quantum control of photodissociation dynamics by ultrashort chirped laser pulses

By a wavepacket propagation, we demonstrate the possibility of controlling the photodissociation branching ratio between two fragment channels by a single ultrashort linearly chirped laser pulse. It is found that a negatively chirped pulse of a moderate chirp rate completely prohibits the production of one of the photofragment channels. Two characteristics of chirped laser pulses contribute to this remarkable effect: the mechanism of adiabatic rapid passage (ARP) for the population transfer between the ground and excited states and the intrapulse pump‐dump process for determining the branching ratio. ©1999 John Wiley & Sons, Inc. Int J Quant Chem 72: 525–532, 1999     

Mechanistic study of the collision-induced dissociation of sodium-cationized polylactide oligomers: A joint experimental and theoretical investigation

The low-kinetic energy collision-induced dissociation (CID) behavior of different sodiumcationized polylactide (PLA) oligomers was thoroughly investigated to shed some light on the analytical potentialities of CID experiments in the context of polymer characterization. Indeed, investigation of several end-groups modified PLA reveals that, in addition to the expected end-group specific dissociations, collisionally-excited PLA.Na⁺ suffer from a backbone cleavage. The so-obtained sodium-bound dimer cations consecutively undergo the loss of a monomeric residue that corresponds to neutral acrylic acid. The experimental observations, performed on a hybrid Q-ToF instrument, were totally corroborated by a theoretical study involving DFT calculations, molecular mechanics, and molecular dynamics calculations.     

A detailed experimental and theoretical study of the femtosecond A-band photodissociation of CH(3)I

The real time photodissociation dynamics of CH(3)I from the A band has been studied experimentally and theoretically. Femtosecond pump-probe experiments in combination with velocity map imaging have been carried out to measure the reaction times (clocking) of the different (nonadiabatic) channels of this photodissociation reaction yielding ground and spin-orbit excited states of the I fragment and vibrationless and vibrationally excited (symmetric stretch and umbrella modes) CH(3) fragments. The measured reaction times have been rationalized by means of a wave packet calculation on the available ab initio potential energy surfaces for the system using a reduced dimensionality model. A 40 fs delay time has been found experimentally between the channels yielding vibrationless CH(3)(nu=0) and I((2)P(32)) and I(*)((2)P(12)) that is well reproduced by the calculations. However, the observed reduction in delay time between the I and I(*) channels when the CH(3) fragment appears with one or two quanta of vibrational excitation in the umbrella mode is not well accounted for by the theoretical model.     

The photodissociation of H2S: A study of indirect photodissociation

We have performed calculations for the photodissociation of H₂S using surfaces constructed to test a model proposed by van Veen et al., in which the dissociation occurs via predissociated levels of the bound ¹B₁ excited state. Total Franck-Condon factors for the photodissociation and partial Franck-Condon factors for the product vibrational distributions are presented.     

Mechanistic information from deuterium isotope effects on mass spectral processes: The elimination of ketene from acetanilides and the subsequent loss of HNC

Elimination of ketene from the molecular ion of p-chloroacetanilide takes place via a 4-membered transition state, as evidenced by deuterium isotope effects on competing metastable transitions.     

Experimental and theoretical study of the photodissociation reaction of thiophenol at 243 nm: intramolecular orbital alignment of the phenylthiyl radical

The photoinduced hydrogen (or deuterium) detachment reaction of thiophenol (C(6)H(5)SH) or thiophenol-d(1) (C(6)H(5)SD) pumped at 243 nm has been investigated using the H (D) ion velocity map imaging technique. Photodissociation products, corresponding to the two distinct and anisotropic rings observed in the H (or D) ion images, are identified as the two lowest electronic states of phenylthiyl radical (C(6)H(5)S). Ab initio calculations show that the singly occupied molecular orbital of the phenylthiyl radical is localized on the sulfur atom and it is oriented either perpendicular or parallel to the molecular plane for the ground (B(1)) and the first excited state (B(2)) species, respectively. The experimental energy separation between these two states is 2600+/-200 cm(-1) in excellent agreement with the authors' theoretical prediction of 2674 cm(-1) at the CASPT2 level. The experimental anisotropy parameter (beta) of -1.0+/-0.05 at the large translational energy of D from the C(6)H(5)SD dissociation indicates that the transition dipole moment associated with this optical transition at 243 nm is perpendicular to the dissociating S-D bond, which in turn suggests an ultrafast D+C(6)H(5)S(B(1)) dissociation channel on a repulsive potential energy surface. The reduced anisotropy parameter of -0.76+/-0.04 observed at the smaller translational energy of D suggests that the D+C(6)H(5)S(B(2)) channel may proceed on adiabatic reaction paths resulting from the coupling of the initially excited state to other low-lying electronic states encountered along the reaction coordinate. Detailed high level ab initio calculations adopting multireference wave functions reveal that the C(6)H(5)S(B(1)) channel may be directly accessed via a (1)(n(pi),sigma(*)) photoexcitation at 243 nm while the key feature of the photodissociation dynamics of the C(6)H(5)S(B(2)) channel is the involvement of the (3)(n(pi),pi(*))-->(3)(n(sigma),sigma(*)) profile as well as the spin-orbit induced avoided crossing between the ground and the (3)(n(pi),sigma(*)) state. The S-D bond dissociation energy of thiophenol-d(1) is accurately estimated to be D(0)=79.6+/-0.3 kcalmol. The S-H bond dissociation energy is also estimated to give D(0)=76.8+/-0.3 kcalmol, which is smaller than previously reported ones by at least 2 kcalmol. The C-H bond of the benzene moiety is found to give rise to the H fragment. Ring opening reactions induced by the pi-pi(*)n(pi)-pi(*) transitions followed by internal conversion may be responsible for the isotropic broad translational energy distribution of fragments.     

Mechanistic aspects of homogeneous and heterogeneous melting processes

Molecular dynamics simulations have been employed to explore the response of crystalline Ar systems with and without a free surface to a gradual temperature rise. The surface-free crystalline bulk undergoes a homogeneous melting process at the limit of superheating, whereas the semicrystal terminating with a free plane surface melts with a heterogeneous mechanism at a temperature corresponding to the equilibrium melting point. Numerical findings suggest that the gradual disordering of the crystalline lattice as well as the homogeneous and heterogeneous melting processes are mediated by atoms with defective coordination. Their concentration in the regions close to the semicrystal surface at the equilibrium melting point is found to be approximately the same as in the surface-free bulk at the limit of superheating.     

Hydrolysis of fluorosilanes: a theoretical study

Hydrolysis and condensation of simple trifluorosilanes, HSiF3 and MeSiF3, was studied by quantum mechanical methods. Hydrolysis of fluorosilanes is highly endothermic. The Gibbs free energy of the first reaction step in the gas phase is 31.4 kJ/mol, which corresponds to an equilibrium constant of 10(-6). Hydrolysis of the subsequent fluorine atoms in trifluorosilanes is thermodynamically more unfavorable than the first step of substitution. No significant difference in thermodynamics of hydrolysis was found between HSiF3 and MeSiF3. The activation energy for hydrolysis by a water dimer is significantly lower than that for hydrolysis by a water monomer. The former reaction is also less unfavorable thermodynamically, due to a high binding energy of the HF-H2O complex formed as a product of hydrolysis. Self-consistent reaction field (SCRF) calculations show that hydrolysis of trifluorosilanes in aqueous medium has lower activation energy than in the gas phase. It is also thermodynamically less unfavorable, due to better solvation of the products. Homofunctional condensation of HSiF2OH is thermodynamically favored. The equilibrium mixture for hydrolysis/condensation of RSiF3 in water is predicted to contain ca. 2.3% disiloxane (HF2Si)2O, if 100-fold excess of water relative to silane is assumed. Further hydrolysis of (HF2Si)2O is negligible. The thermodynamics of fluorosilane hydrolysis contrasts with that of chlorosilanes, where both hydrolysis and condensation are strongly favorable. Moreover, in the case of trichlorosilanes each subsequent hydrolysis step is more facile, leading to the product of full hydrolysis, RSi(OH)3.     

CO rebinding to protoheme: investigations of the proximal and distal contributions to the geminate rebinding barrier

The rebinding kinetics of CO to protoheme (FePPIX) in the presence and absence of a proximal imidazole ligand reveals the magnitude of the rebinding barrier associated with proximal histidine ligation. The ligation states of the heme under different solvent conditions are also investigated using both equilibrium and transient spectroscopy. In the absence of imidazole, a weak ligand (probably water) is bound on the proximal side of the FePPIX-CO adduct. When the heme is encapsulated in micelles of cetyltrimethylammonium bromide (CTAB), photolysis of FePPIX-CO induces a complicated set of proximal ligation changes. In contrast, the use of glycerol-water solutions leads to a simple two-state geminate kinetic response with rapid (10-100 ps) CO recombination and a geminate amplitude that can be controlled by adjusting the solvent viscosity. By comparing the rate of CO rebinding to protoheme in glycerol solution with and without a bound proximal imidazole ligand, we find the enthalpic contribution to the proximal rebinding barrier, H(p), to be 11 +/- 2 kJ/mol. Further comparison of the CO rebinding rate of the imidazole bound protoheme with the analogous rate in myoglobin (Mb) leads to a determination of the difference in their distal free energy barriers: DeltaG(D) approximately 12 +/- 1 kJ/mol. Estimates of the entropic contributions, due to the ligand accessible volumes in the distal pocket and the xenon-4 cavity of myoglobin ( approximately 3 kJ/mol), then lead to a distal pocket enthalpic barrier of H(D) approximately 9 +/- 2 kJ/mol. These results agree well with the predictions of a simple model and with previous independent room-temperature measurements of the enthalpic MbCO rebinding barrier (18 +/- 2 kJ/mol).     

Oligothiophene catenanes and knots: a theoretical study

Oligothiophene [2]catenanes and knots containing up to 28 thiophene units have been studied at the BHandHLYP/3-21G level of theory. Small knots (less than 22 thiophene units) and [2]catenanes (less than 18 thiophene units) are strained molecules. Larger knots and [2]catenanes are almost strain-free. [2]Catenanes and knots having less than 18 and 24 units, respectively, show transversal electronic coupling destroying one-dimensionality of molecules reflecting in smaller band gaps compared to larger knots and catenanes. Ionization potentials of knots and catenanes are always higher compared to that of lineal oligomers due to less effective conjugation. Polaron formation in catenanes is delocalized only over one ring, leaving another intact. In the case of a knot containing 22 thiophene units, estimated polaron delocalization is 8 to 9 repeating units.     

Photophysical processes and the photodissociation of chemical bonds in polyatomic molecules

The main concepts of the nature of electronically excited states in polyatomic molecules and the intramolecular and intermolecular processes of their evolution are reported. The dependence of the probabilities of these processes on the electronic structure of the molecule is considered. Possible mechanisms of the dissociation of electronically excited molecules with bond cleavage are discussed, and the theoretical results of this consideration are given. The experimental data obtained by the authors are interpreted. In this case, attention is focused on C-H-bond photodissociation processes in a condensed phase, which are the best studied processes. The dissociation of other bonds is briefly discussed.     

Mechanistic study of the deamination reaction of guanine: a computational study

The mechanism for the deamination of guanine with H(2)O, OH(-), H(2)O/OH(-) and for GuaH(+) with H(2)O has been investigated using ab initio calculations. Optimized geometries of the reactants, transition states, intermediates, and products were determined at RHF/6-31G(d), MP2/6-31G(d), B3LYP/6-31G(d), and B3LYP/6-31+G(d) levels of theory. Energies were also determined at G3MP2, G3MP2B3, G4MP2, and CBS-QB3 levels of theory. Intrinsic reaction coordinate (IRC) calculations were performed to characterize the transition states on the potential energy surface. Thermodynamic properties (ΔE, ΔH, and ΔG), activation energies, enthalpies, and Gibbs free energies of activation were also calculated for each reaction investigated. All pathways yield an initial tetrahedral intermediate and an intermediate in the last step that dissociates to products via a 1,3-proton shift. At the G3MP2 level of theory, deamination with OH(-) was found to have an activation energy barrier of 155 kJ mol(-1) compared to 187 kJ mol(-1) for the reaction with H(2)O and 243 kJ mol(-1) for GuaH(+) with H(2)O. The lowest overall activation energy, 144 kJ mol(-1) at the G3MP2 level, was obtained for the deamination of guanine with H(2)O/OH(-). Due to a lack of experimental results for guanine deamination, a comparison is made with those of cytosine, whose deamination reaction parallels that of guanine.