Kinetics and mechanism of protection of thymine from phosphate radical anion under anoxic conditions

The rates of photooxidation of thymine in the presence of peroxydiphosphate (PDP) have been determined by measuring the absorbance of thymine at 264 nm spectrophotometrically. The rates and the quantum yields (φ) of oxidation of thymine by phosphate radical anion have been determined in the presence of different concentrations of dithiothreitol (DTT). An increase in DTT is found to decrease the rate of oxidation of thymine, suggesting that DTT acts as an efficient scavenger of PO₄^·2? and protects thymine from it. Phosphate radical anion competes for thymine as well as DTT; the rate constant for the phosphate radical anion with DTT has been calculated to be 2.21 × 10⁹ dm³ mol^?1 s^?1, assuming the rate constant of phosphate radical anion reaction with thymine as 9.6 × 10⁷ dm³ mol^?1 s^?1. The quantum yields of photooxidation of thymine have been calculated from the rates of oxidation of thymine and the light intensity absorbed by PDP at 254 nm, the wavelength at which PDP is activated to phosphate radical anion. From the results of experimentally determined quantum yields (φ_exptl) and the quantum yields calculated (φ_cl), assuming DTT acts only as a scavenger of PO₄^·2? radicals, show that φ_exptl values are lower than φ_cl values. The φ′ values, which are experimentally found quantum yield values at each DTT concentration and corrected for PO₄^·2? scavenging by DTT, are also found to be greater than φ_exptl values. These observations suggest that the thymine radicals are repaired by DTT in addition to scavenging of phosphate radical anions. © 2001 John Wiley & Sons, Inc. Int J Chem Kinet 33: 271–275, 2001     

Kinetics and mechanism of protection of thymine from sulphate radical anion under anoxic conditions

The rates of photooxidation of thymine in presence of peroxydisulphate (PDS) have been determined by measuring the absorbance of thymine at 264 nm spectrophotometrically. The rates and the quantum yields (φ) of oxidation of thymine by sulphate radical anion have been determined in the presence of different concentrations of caffeic acid. Increase in [caffeic acid] is found to decrease the rate of oxidation of thymine suggesting that caffeic acid acts as an efficient scavenger of SO ₄ ^•- and protects thymine from it. Sulphate radical anion competes for thymine as well as for caffeic acid. The rate constant of sulphate radical anion with caffeic acid has been calculated to be 1.24 x 10¹⁰ dm³ mol^-1s^-1. The quantum yields of photooxidation of thymine have been calculated from the rates of oxidation of thymine and the light intensity absorbed by PDS at 254 nm, the wavelength at which PDS is activated to sulphate radical anion. From the results of experimentally determined quantum yields (φ_expt1) and the quantum yields calculated (φ_cl) assuming caffeic acid acting only as a scavenger of SO ₄ ^•- radicals show that φ_expt1 values are lower than φ_cl values. The φ ’ values, which are experimentally found quantum yield values at each caffeic acid concentration and corrected for SO ₄ ^•- scavenging by caffeic acid, are also found to be greater than φ_expt1 values. These observations suggest that the thymine radicals are repaired by caffeic acid in addition to scavenging of sulphate radical anions.     

Mechanism of protection of adenosine from sulphate radical anion and repair of adenosine radicals by caffeic acid in aqueous solution

The photooxidation of adenosine in presence of peroxydisulphate (PDS) has been studied by spectrophotometrically measuring the absorbance of adenosine at 260 nm. The rates of oxidation of adenosine by sulphate radical anion have been determined in the presence of different concentrations of caffeic acid. Increase in [caffeic acid] is found to decrease the rate of oxidation of adenosine suggesting that caffeic acid acts as an efficient scavenger of SO ₄ ^• and protects adenosine from it. Sulphate radical anion competes for adenosine as well as for caffeic acid. The quantum yields of photooxidation of adenosine have been calculated from the rates of oxidation of adenosine and the light intensity absorbed by PDS at 254 nm, the wavelength at which PDS is activated to sulphate radical anion. From the results of experimentally determined quantum yields (Φ_expt1) and the quantum yields calculated (Φ_cal) assuming caffeic acid acting only as a scavenger of SO ₄ ^• show that Φ_expt1 values are lower than Φ_expt1 values. The ǵf values, which are experimentally found quantum yield values at each caffeic acid concentration and corrected for ₄ ^• scavenging by caffeic acid, are also found to be greater than Φ_expt1 values. These observations suggest that the transient adenosine radicals are repaired by caffeic acid in addition to scavenging of sulphate radical anions.     

Pulse radiolysis study of dithio-oxamide in aqueous solutions

The reactions of e⁻ _aq, H-atoms, OH radicals and some one electron oxidants and reductants were studied with dithio-oxamide (DTO) in aqueous solutions using pulse radiolysis technique. The transient species formed by the reaction of e⁻ _aq with DTO at pH 6.8 has an absorption band with λ _max at 380 nm and is reducing in nature. H-atom reaction with DTO at pH 6.8 also produced the same transient species. The semi-reduced species was found to be neutral indicating that the electron adduct gets protonated quickly. However at pH 1, the species produced by H-atom reaction had a different spectrum with λ _max at 360 and 520 nm. Reaction of acetone ketyl radicals and CO₂ ⁻ radicals with DTO at pH 6.8 gave transient spectra which were identical to that obtained by e⁻ _aq reaction. However at pH 1, the spectrum obtained by the reaction of acetone ketyl radicals with DTO was similar to that obtained by H-atom reaction at that pH. The transient species formed by OH radical reaction with DTO in the pH range 1–9.2 also has two absorption maxima at 360 and 520 nm. This spectrum was identical with the spectrum obtained by H-atom reaction at pH 1. This means that all these radicals viz. OH, H-atom and (CH₃)₂COH radicals react with DTO at pH 1 by H-abstraction mechanism. The transient species produced was found to be sensitive to the presence of oxygen. One-electron oxidizing radicals such as Br₂ ^−· and SO₄ ^−· radicals reacted with DTO at neutral pH to give the same species as produced by OH radical reaction having absorption maxima at 360 to 520 nm. At acidic pHs, only Br₂ ^−· and Cl₂ ^−· radicals were able to oxidize DTO to give the same species as produced by OH radical reaction. The semioxidized species is a resonance stabilized species with the electron delocalized over the-N-C-S bond. This species was found to be neutral and non-oxidizing in nature.     

Quenching of nucleotide-derived radicals by bis benzimidazole derivative Hoechst-33258 in aqueous solution

The pulse radiolysis technique has been employed to investigate the reaction of DNA-minor-groove ligand bisbenzimidazole Hoechst 33258 with pyrimidine and purine nucleotide-derived radicals. Formation of an N-centred Hoechst-33258 radical is observed. Bimolecular rate constants and the yields of Hoechst-33258 radical have been evaluated. While the rate constant for the reaction of pyrimidine-derived radicals with Hoechst-33258 remained the same (1–2) × 10⁹ dm³ mol⁻¹ s⁻¹, the yields of the Hoechst-33258 radical varied from 25% (5′-cytidine monophosphate) to 75% (5′-guanosine monophosphate) under anoxic conditions. The rate constant values for the reaction of purine-derived radicals with Hoechst-33258, under oxic and anoxic conditions, remained the same whereas with pyrimidine-derived radicals, the rate constant value under oxic conditions was about two orders of magnitude lower than under anoxic conditions. The difference in the yields of Hoechst-33258 radical with various nucleotide-derived radicals suggest the formation of different types of radicals and that the reaction mainly occurs by electron transfer from Hoechst-33258 to the nucleotide radicals.     

The intracomplex radical-cation chain oxidation of tryptophan photosensitized by uranyl ion

Photooxidation of tryptophan (Trp) in complexes with the uranyl ion upon selective excitation was studied, and the quantum yields of amino acid oxidation (ϕ(O₂)) were determined. It was shown that the photosensitized oxidation of Trp by the uranyl ion involves the chain reaction of Trp^·+ radical cations with O₂, rather than follows the commonly accepted mechanism of interaction of the substrate radical cation with the superoxide ion $ O\overline {_2^ - } $ O\overline {_2^ - } .     

Photochemistry of the IrCl<Subscript>6</Subscript><Superscript>2−</Superscript> complex in aqueous solutions in the presence of the bromide anions

Laser flash photolysis (308 nm) was applied to study photochemistry of the IrCl₆ ²⁻ complex in aqueous solutions in the presence of the Br⁻ anions. The formation of the Br₂ ^·− radical anions in the reaction between the Br⁻ ion and secondary radical pair formed after the photon absorption by the initial complex was observed. The Br₂ ^·− radical anions decay both in recombination and in the reaction with the initial IrCl₆ ²⁻ complex.     

Oxidation reactions of 1,3-diphenylpropane-1,3-dione

The free radical scavenging properties and possible antioxidant activity of 1,3-diphenylpropane-1,3-dione (1) are reported. Pulse radiolysis technique was employed to study the one-electron oxidation of 1 with various radicals viz. CCl₃O₂ ^•, N₃ ^• and^•OH in homogeneous aqueous solution. All these radicals reacted with 1 under ambient conditions at almost diffusion controlled rates producing transient species with an absorption maximum around 420 nm that decayed at first order rates. The transient absorption peak was shifted in the case of CCl₃OO^• radical reaction with 1 due to change in the polarity of the medium. Formation of a stable product with a broad absorption band starting from 400 nm and cut off at 230 nm was observed in the oxidation of 1 with^•OH and^•N₃ radicals. In a biological system also, 1 showed significant inhibitory activity against Fe²⁺-mediatedlipidperoxidation. Based on these observations, a suitable mechanism for the oxidation of 1 has been proposed.     

Reactive oxygen and nitrogen species (RONS) scavenging reactions of o-vanillin: Pulse radiolysis and stopped flow studies

Reactions of peroxyl radicals and peroxynitrite with o-vanillin (2-hydroxy 3-methoxy benzaldehyde), a positional isomer of the well-known dietary compound vanillin, were studied to understand the mechanisms of its free radical scavenging action. Trichloromethylperoxyl radicals (CCl₃O ₂ ^· ) were used as model peroxyl radicals and their reactions with o-vanillin were studied using nanosecond pulse radiolysis technique with absorption detection. The reaction produced a transient with a bimolecular rate constant of approx. 10⁵ M⁻¹s⁻¹, having absorption in the 400–500 nm region with a maximum at 450 nm. This spectrum looked significantly different from that of phenoxyl radicals of o-vanillin produced by the one-electron oxidation by azide radicals. The spectra and decay kinetics suggest that peroxyl radical reacts with o-vanillin mainly by forming a radical adduct. Peroxynitrite reactions with o-vanillin at pH 6.8 were studied using a stopped-flow spectrophotometer. o-Vanillin reacts with peroxynitrite with a bimolecular rate constant of 3 × 10³ M⁻¹s⁻¹. The reaction produced an intermediate having absorption in the wavelength region of 300–500 nm with a absorption maximum at 420 nm, that subsequently decayed in 20 s with a first-order decay constant of 0.09 s⁻¹. The studies indicate that o-vanillin is a very efficient scavenger of peroxynitrite, but not a very good scavenger of peroxyl radical. The reactions take place through the aldehyde and the phenolic OH group and are significantly different from other phenolic compounds.     

Pulse radiolysis of 3-pyridine methanol and 3-pyridine carboxaldehyde in aqueous solutions

Reactions of e_aq^-, H-atom and OH radicals with 3-pyridine methanol (3-PM) and 3-pyridine carboxaldehyde (3-PCA) have been studied at various pHs using pulse radiolysis technique. e_aq^- was found to be highly reactive with both 3-PM and 3-PCA (k approx. 10¹⁰ dm³ mol¹ s^-1). Semi-reduced species formed in both cases were strongly reducing in nature. In the case of 3-PM, electron addition leads to the formation of pyridinyl radicals whereas in the case of 3-PCA, PyCHOH type radicals are formed. At pH 6.8, H-atom reaction with 3-PCA also gives semi-reduced species (PyCHOH), whereas at pH 1, H-atoms add to the ring. (CH₃)₂˙COH radicals were found to transfer electron to 3-PCA at all the pH values tested and by making use of changes in the absorption spectra, pK_a values of the semi-reduced species were determined to be 4.5 and 10.6. OH radicals were found to undergo addition reaction with 3-PCA, whereas in the case of 3-PM they reacted by H-abstraction as well as addition reaction. By following the yield of methylviologen radical cation formed by electron transfer reaction, it was estimated that approx. 50% of OH radicals react with 3-PM by H-atom abstraction at pH 6.8, giving reducing radicals, whereas at pH 3.2, where 3-PM is in the protonated form, the same is only about 10%. At pH 13, O^-˙ radical anions were found to react exclusively by H-atom abstraction. Reaction of SO₄^-˙ radicals with 3-PCA was found to give a species identical to the one formed by one electron reduction of nicotinic acid at acidic pH values.     

Alkyl radical adducts of aromatic N-oxides as hydrogen-abstracting agents: The reactivity of phenazine-N,N′-dioxide-methyl radical adduct

An O-methylated analog of protonated phenazine-di-N-oxide radical anion abstracts hydrogen from primary and secondary alcohols in a slow (k ₁ < 500 M⁻¹ s⁻¹) bimolecular reaction. No kinetic evidence has been found for the unimolecular release of free methoxyl radicals through the homolytic N-OMe bond cleavage in these species. DFT calculations at the UB3LYP 6-31G(d) level indicate that protonated and O-alkylated radical anions of pyrazine, quinoxaline and phenazine di-N-oxides are close analogues of aromatic nitroxyl radicals with the highest spin density localized on the oxygen and nitrogen of the nitrone moiety.     

Kinetics of oxidation of adenosine by t-butoxyl radical: Protection and repair by caffeic acid

The kinetics of oxidation of adenosine and caffeic acid by t-BuO^• has been studied by the photolysis of t-BuOOH in the presence of t-BuOH. The rates and the quantum yields (φ) of oxidation of caffeic acid by t-BuO^• radicals have been determined in the absence and presence of varying concentrations of adenosine. An increase in the concentration of adenosine has been found to decrease the rate of oxidation of caffeic acid suggesting that adenosine and caffeic acid compete for t-BuO^• radicals. From competition kinetics, the rate constant of t-BuO^•–caffeic acid reaction has been calculated to be 8.15 × 10⁸ dm³ mol⁻¹ s⁻¹. The results of experimentally determined quantum yield (φ_exptl) values of oxidation of caffeic acid and the quantum yield values calculated (φ_cal) by assuming that caffeic acid reacts only with t-BuO^• radicals suggest that caffeic acid not only protects adenosine from t-BuO^• radicals but also repairs adenosine radicals formed by the reaction of t-BuO^• radicals. © 2005 Wiley Periodicals, Inc. Int J Chem Kinet 37: 515–521, 2005     

Riboflavin-sensitized photochemical radical ion chain reaction of sulfo-group substitution for halogen in halogenated hydroxynaphthalenes

It was shown that riboflavin (RF) is a sensitizer for the radical ion chain reaction of sulfo group substitution for halogen in halogenated hydroxynaphthalenes. The initaition mechanism involves the electron transfer reaction between the sulfite ion and excited riboflavin. The quantum yields of RF radical anions from the singlet and the triplet states upon excitation in an aqueous sodium sulfite solution are 0.01 and 0.15, respectively, as determined by means of flash photolysis. The principal decay reaction for RF radical anions is their recombination with sulfite radical anions in the bulk of solution at a rate constant of (3.8 ± 0.5) × 10⁹ dm³ mol^?1 s^?1. The quantum yields of the riboflavin-sensitized substitution reaction increases in the presence of electron scavengers (chloranil, dinitrobenzene) and inorganic salts in the system.     

Voltammetric Study of the Influence of Various Phosphate Anions on Silver Nanoparticle Oxidation

The antibacterial properties of silver are strongly controlled by the redox couple of silver/silver(I). This work reports the influence of phosphate anions on silver nanoparticle oxidation, which is important given the abundance of phosphate species in biological systems. The three different species of anions were found to have a varying degree of influence on silver oxidation with the order PO₄³⁻>HPO₄²⁻>H₂PO₄⁻. It was found that in the presence of phosphate anions, the silver oxidation potential shifts to a less positive value, which indicated the increasing ease of the oxidation reaction of silver. Given that the interplay between silver and its cation is crucial to its antibacterial properties and significant concentrations of the HPO₄²⁻ anion are present at biological pH (near neutral), it is essential that the influence of the dibasic anion (HPO₄²⁻) on silver oxidation dynamics be considered for biological systems.     

Photoinduced decomposition of the polybromostyryl carbanions

The photoinduced decay in THF of the sodium salt of the polybromostyryl carbanions (PS_B?) was investigated in vacuum at ?78°C. Maximal rates of decay were obtained when the wavelength of the incident light corresponded to the absorption maximum of the PS_B? at 495 nm. The quantum yield of the process was found to be 13 eq./Einstein. Products of the photostimulated decompositions at ?78°C were found to be different from those obtained as result of the “dark” thermal decomposition at –20°C. Decomposition of the PS_B? carbanions was accompanied by evolution of Br^? anions and by formation of polyaryl carbanions absorbing in the 270- to 400-nm range. The mechanism of the photoinduced decomposition of PS_B?, though basically analogous to the S_RN1 reaction mechanism, was found to differ significantly from the latter. The intramolecular dissociative electron transfer was assumed to represent its initiation step. Its propagation was attributed to the addition of PS_B? to the initially formed biradicals, ejection of Br^? from the resulting radical anions, and intramolecular electron transfer yielding polybromostyryl radicals. Products of the photoinduced decomposition of PS_B? remained soluble in THF when the intensity of the incident light was relatively weak, though their molecular weight distribution broadened. Insoluble, highly crosslinked polymers were obtained when the intensity of the incident light was very high.     

Radical and Electrophilic Reactions of Anodic Oxidation Intermediates of Organophosphorus Compounds

Abstract

Cationic radicals generated by anodic oxidation of organophosphorus(III) compounds are superelectrophilic radicals. This determines the pattern of their reactivity towards various substrates. The oxidation of (RO)₂ PO^? and (RO)₂PS^? gives corresponding radicals. Interaction of the mentioned radical species with ArH and olefines includes a common stage of radical adduct formation. It has been stated that the oxidation of the adduct into corresponding carbonium ion plays an important role in the following adduct conversions. This is particularly confirmed by the difference in the composition of products obtained in conditions of homogeneous (via photolysis or with stable radical cations) and heterogeneous (on the anode surface) generation of phosphorylating species.     

Theoretical studies of electron and hydrogen transfer reactions between semiquinone radicals and oxygen

 To explore the interactions between ubiquinones and oxygen in living organisms, the thermodynamics of a series of electron and hydrogen transfer reactions between semiquinone radicals, as well as their corresponding protonated forms, and oxygen, singlet or triplet, were studied using the hybrid Hartree–Fock–density functional theory method Becke's three parameter hybrid method with the Lee, Yang, and Parr correlation functional. Effects of the solvent and of the isoprenyl tail on the electron and hydrogen transfer reactions were also investigated. It is found that semiquinone radicals (semiquinone anion radicals or protonated semiquinone radicals) cannot react with triplet oxygen to form the superoxide anion radical O₂ ⁻. In contrast, neutral quinones can scavenge O₂ ⁻ efficiently. In the gas phase, only protonated semiquinone radicals can react spontaneously with singlet oxygen to produce peroxyl radical (HO₂). However, both semiquinone anion radicals and protonated semiquinone radicals can react with singlet oxygen to produce harmful oxygen radicals (O₂ ^{− a l l b u l l} and HO₂, respectively) in aqueous and protein environments. The free-energy changes of the corresponding reactions obtained for different ubiquinone systems are very similar. It clearly shows that the isoprenyl tail does not influence the electron and hydrogen transfer reactions between semiquinone radicals and oxygen significantly. Results of electron affinities, vertical ionization potentials, and proton affinities also show that the isoprenyl tail has no substantial effect on the electronic properties of ubiquinones. Received: 3 July 2000 / Accepted: 6 September 2000 / Published online: 21 December 2000     

Mechanism and kinetics of the hydroxyl and hydroperoxyl radical scavenging activity of <Emphasis Type="Italic">N</Emphasis>-acetylcysteine amide

The ^·OH and ^·OOH radical scavenging activity of N-acetylcysteine amide (NACA) has been studied using density functional theory, specifically the M05-2X functional. All possible reaction sites have been considered, and the branching ratios have been estimated. The efficiency of different mechanisms of reaction has been evaluated, and it has been concluded that NACA reacts exclusively by hydrogen atom transfer (HAT). The overall reactivity of NACA toward OH radicals is proposed to be diffusion-controlled in both non-polar and polar media. The values of the overall rate coefficients are 3.80 × 10⁹ and 1.36 × 10⁹ L mol⁻¹ s⁻¹ for benzene and aqueous solutions, respectively. The reactivity of NACA toward ^·OOH, on the other hand, is much lower but still higher than those of melatonin and caffeine. HAT from the –SH site is proposed to be the channel accounting for most of the radical scavenging activity of NACA in aqueous solution. In non-polar environments, two channels of reaction were found to similarly contribute to the overall reactivity of NACA toward OH radicals. They are those corresponding to hydrogen atom transfer from –CH₂ and –SH sites.     

Formation of excited uranyl in oxidation of tetravalent uranium with oxygen in HClO<Subscript>4</Subscript> aqueous solutions: IV. Enhancement of the chemiluminescent reaction in the presence of Fe<Superscript>2+</Superscript>

Experimental data that support the hypothesis on the determining role of ^•OH radicals in the emergence of luminescence during the oxidation of U(IV) with atmospheric oxygen in aqueous HClO₄ solutions have been obtained using the H₂O₂-FeSO₄ system as a source of OH radicals. It has been found that brighter chemiluminescence (CL) is observed in the presence of 10⁻⁵ mol/l Fe²⁺ in a 5 × 10⁻⁴ mol/l U(IV) solution in 0.1 mol/l HClO₄ compared with the FeSO₄-free solution. The CL yield in the presence of Fe²⁺ (η_CL = 3.9 × 10⁻⁸) is 2.8 times that in the solution without iron (η_CL = 1.4 × 10⁻⁸). These results can be regarded as a further piece of evidence for the idea that the elementary event of the formation of a CL emitter—electronically excited uranyl ion *(UO₂²⁺)—in radical chain U(IV) oxidation reactions is electron transfer from the uranoyl ion (UO₂⁺) to the oxidant, the ^•OH radical. Thus, one of the main prerequisites for light emission during U(IV) oxidation reactions is a high generation efficiency of ^•OH radicals and their easy access to the uranoyl UO₂⁺ ion.     

Oxidation of polyethylene under irradiation at low temperature and low dose rate. Part I. The case of “pure” radiochemical initiation

As part of a study on the kinetic modelling of polyethylene oxidation under irradiation at low temperature and low dose rate, this first part deals with the kinetic regime in which thermal initiation, linked to hydroperoxide decomposition, is negligible compared to radiochemical initiation due to polymer radiolysis. The kinetic analysis is based on results published 30 years ago by Decker, Mayo and Richardson. A small modification of their mechanistic scheme, consisting in the introduction of a non-terminating bimolecular combination of PO₂ radicals, leads to a more consistent set of radiochemical yield values. The most significant change is a decrease in the radiochemical yield of radicals G_i from 10 to 8. At 45 °C, termination of PO₂ radicals is not very efficient: 35-40% of the PO₂ + PO₂ encounters are non-terminating, 75% of the termination events lead to peroxide bridges, the rest is a disproportionation according to the Russell mechanism.