S-adenosylhomocysteine analogues with the carbon-5' and sulfur atoms replaced by a vinyl unit

Cross-metathesis of suitably protected 5'-deoxy-5'-methyleneadenosines with racemic and chiral N-Boc-protected six-carbon amino acids bearing a terminal double bond in the presence of the Hoveyda-Grubbs catalyst gave adenosylhomocysteine analogues with the C5'-C6' double bond. Bromination with pyridinium tribromide and dehydrobromination with DBU followed by standard deprotections yielded the 5'-(bromo)vinyl analogue. [structure: see text]     

Stimulated by cyclodextrins high yield synthesis of azocrown analogues comprising pyrrole or imidazole residues

The influence of cyclodextrins (CDs) on the formation of azocrown ethers comprising pyrrole, imidazole and substituted imidazole has been studied. Pyrrole, imidazole, 2-methyl-, 4-methyl- and 4-phenylimidazole were coupled with bis-diazonium salts derived from bis-1,5-(2-aminophenoxy)-3-oxapentane or bis-1,8-(2-aminophenoxy)-3,6-dioxaoctane to form macrocyclic compounds with two azo units. The syntheses were performed under standard conditions in the presence of α-, β- or γ-CDs and the yield of the reaction products was compared with the results of plain experiments, i.e. without CDs. The results are discussed in terms of co-conformation of azole molecules embedded in CD cavity.

Pyrrole or imidazole or imidazole derivatives were coupled with bis-diazonium salts to form macrocycles with two azo units. The syntheses were performed under standard conditions in the presence of α-, β-, or γ-cyclodextrin and the yield of the reaction products was compared with the results of plain experiments, i.e. without CDs. The results are discussed in terms of co-conformation of azole molecules embedded in cyclodextrin cavity.     

Design and construction of an open multistranded beta-sheet polypeptide stabilized by a disulfide bridge

The design and characterization of an open eight-stranded beta-sheet in a synthetic, 2-fold symmetric 70-residue peptide is described. The design strategy involves the generation of a 35-residue four-stranded beta-sheet peptide in which successive hairpins are nucleated by appropriately positioned (D)Pro-Xxx sequences. Oxidative dimerization using a single Cys residue positioned at the center of the C-terminal strand results in a disulfide-bridged eight-stranded structure. Nuclear Overhauser effects firmly establish an eight-stranded beta-sheet in methanol. In water, the outer strands are frayed, but a well-defined four-stranded beta-sheet stabilized by a disulfide bridge and a hydrophobic cluster is determined from NMR data. Comparison of the precursor peptide with the disulfide-bridged dimer reveals considerable enhancement of beta-sheet content in the latter, suggesting that the disulfide cross-link is an effective strategy for the stabilization of beta-sheets.     

Dehydrogenation of alcohols with allyl carbonates catalyzed by palladium or ruthenium complexes

Treatment of alkyl allyl carbonates with a phosphine-free palladium catalyst in acetonltrile affords ketones or aldehydes in high yields. This new method of oxidation of alcohols via allyl carbonates can be applied to various alcohols except simple primary alcohols. The reaction proceeds under neutral conditions and hence various acid- or base-sensitive functional groups are not affected during the reaction. Ruthenium hydride complex is also an effective catalyst. Direct dehydrogenatlon of secondary or allylic alcohols was carried out by the reaction with allyl methyl carbonate by the catalysis of the ruthenium complex. 1,4-Diols and 1,5-diols are converted to lactones with excess allyl methyl carbonate.     

Theoretical study of changes in pi-electron delocalization in the analogues of an ortho-hydroxy schiff base when the proton is replaced with Li+ or BeH+

Molecular geometries of ortho-hydroxy Schiff base in keto-enamine and enol-imine tautomeric forms, its anion, and their derivatives in which H+ was replaced with Li+ or BeH+ were optimized at the B3LYP/6-311+G level of theory. Isodesmic reactions for estimating delocalization due to H-bonding or cation chelating were calculated. Geometry-based aromaticity index HOMA and magnetism-based NICS1(zz) index were used to estimate pi-electron delocalization. Keto-enamine tautomer exhibits low aromaticity in the ring and a relatively high pi-electron delocalization in the quasi-ring. The reverse was found for enol-imine tautomer. The Li+ and BeH+ derivatives showed a relatively high pi-electron delocalization in the ring and in the quasi-ring. This may be interpreted by an extension of the electron delocalization path in the pi-electron system through low-lying unoccupied p-type orbitals of Li+ and BeH+ cations.     

Enantiomer discrimination by mass spectrometry: noncovalent interactions of an N-derivatized dipeptide with various cinchona alkaloid derivatives and comparison with enantioselective liquid-phase separations

The enantiomer discrimination properties of cinchona alkaloid derived chiral selectors (CSs) towards a dipeptide analyte are examined by electrospray ionization mass spectrometry. The complexes formed between the CSs and the analyte enantiomers owing to various noncovalent interactions are analyzed and the magnitudes of enantiomer discrimination are determined from the complexes mass spectrometric intensities. The influence of different structural features of the CSs on enantioselectivity is discussed. The enantiomer discrimination results obtained by mass spectrometry are compared with those from related liquid chromatography enantiomer separations. A certain coherence between the chromatographic and mass spectrometric enantioselectivities could be established and the enantiomer discrimination patterns, i.e., the relative binding strengths, were identical for the two techniques. Thus, the use of mass spectrometry as a screening tool in the development of new CSs for chromatographic applications seems feasible.     

Synthesis and properties of a bilirubin analog with propionic acid groups replaced by carboxyl

The unnatural bile pigment analog of bilirubin-IXα, 2,3,7,13,17,18-hexamethyl-(10H,21H,23H,24H)-bilin-1,19-dione-8,12-dicarboxylic acid (1), was synthesized as its diethyl ester by coupling 4,4′-dimethyl-3,3′-dicarboethoxydipyrrylmethane-5,5′-dialdehyde with 3,4-dimethylpyrrolin-2-one.     

The venom of the snake genus Atheris contains a new class of peptides with clusters of histidine and glycine residues

We investigated venoms from members of the genus Atheris (Serpentes, Viperidae), namely the rough scale bush viper (Atheris squamigera), the green bush viper (A. chlorechis) and the great lakes bush viper (A. nitschei), using mass spectrometry-based strategies, relying on matrix-assisted laser desorption/ionisation time-of-flight mass spectrometry (MALDI-TOF-MS) and electrospray ionisation tandem mass spectrometry (ESI-MS/MS) with de novo peptide sequencing. We discovered a set of novel peptides with masses in the 2-3 kDa range and containing poly-His and poly-Gly segments (pHpG). Complete primary structural elucidation and confirmation of two sequences by Edman degradation indicated the consensus sequence EDDH(9)GVG(10). Bioinformatic investigations in protein sequence databanks did not show relevant homology with known peptides or proteins. However, a more extensive investigation of data in nucleic acid databases revealed some similarities to the precursor sequences of bradykinin potentiating peptides (BPP) and C-type natriuretic peptides (CNP), agents that are known to affect the cardiovascular system by acting on specific metalloproteases and receptors. The novel pHpG peptides found in Atheris venoms might also act on the cardiovascular system by inhibiting particular metalloproteases, which however remain to be identified.     

A hybrid consisting of coordination polymer and noncovalent organic networks: a highly ordered 2-D phenol network assembled by edge-to-face pi-pi interactions

A 2-D metal-organic open framework having 1-D channels, [Cu(C(10)H(26)N(6))](3)[C(6)H(3)(COO)(3)](2).18H(2)O (1), was constructed by the self-assembly of the Cu(II) complex of hexaazamacrocycle A (A = C(10)H(26)N(6)) with sodium 1,3,5-benzenetricarboxylate (BTC(3)(-)) in DMSO-H(2)O solution. 1 crystallizes in the trigonal space group P with a = b = 17.705(1) A, c = 6.940(1) A, alpha = beta = 90 degrees, gamma = 120 degrees, V = 1884.0(3) A(3), Z = 1, and rho(calcd) = 1.428 g cm(-3). The X-ray crystal structure of 1 indicates that each Cu(II) macrocyclic unit binds two BTC(3-) ions in a trans position and each BTC(3-) ion coordinates three Cu(II) macrocyclic complexes to form 2-D coordination polymer layers with honeycomb cavities (effective size 8.1 A), and the layers are packed to generate 1-D channels perpendicularly to the 2-D layers. Solid 1 binds guest molecules such as MeOH, EtOH, and PhOH with different binding constant and capacity. By the treatment of 1 with aqueous solution of phenol, a hybrid solid [Cu(C(10)H(26)N(6))](3)[C(6)H(3)(COO)(3)](2).9PhOH.6H(2)O (2) was assembled. 2 crystallizes in the trigonal R3 space group with a = b = 20.461(1) A, c = 24.159(1) A, alpha = beta = 90 degrees, gamma = 120 degrees, V = 8759.2(7) A(3), Z = 3, and rho(calcd) = 1.280 g cm(-3). In 2, highly ordered 2-D noncovalent phenol layers are formed by the edge-to-face pi-pi interactions between the phenol molecules and are alternately packed with the coordination polymer layers in the crystal lattice.     

Columnar liquid crystalline assembly of a U‐shaped molecular scaffold stabilized by covalent or noncovalent incorporation of aromatic molecules

We report on our serendipitous finding of the anomalous behavior of a novel liquid crystalline (LC) molecule U _H/H , containing a U‐shaped handle. While U _H/H itself shows a bicontinuous cubic (Cub_bi) phase, U _H/H in the presence of pyrene molecules as an external guest forms a hexagonal columnar (Col_h) phase without phase separation. Interestingly, even when the pyrene molecules were covalently attached to U _H/H ( U _Py/Py ), the molecule exhibited a Col_h phase, with a similar columnar geometry to that of U _H/H mixed with pyrene molecules (1–4 equiv.). This result means that no matter how the pyrene moieties are incorporated in the LC system, the resultant material exhibited a similar molecular assembly with a columnar geometry. This finding is interesting because U _H/H and pyrene molecules do not seem to have specific interactions or shape complementarity to form a columnar assembly, as in the case of U _Py/Py . © 2018 Wiley Periodicals, Inc. J. Polym. Sci., Part A: Polym. Chem. 2019 , 57, 342–351     

钐试剂在合成中的应用I. 金属钐作用下烯丙基和苄基卤代物与羰基化合物的反应

本文研究了金属钐作用下的Barbier型反应。结果表明, 经氯化汞活化的金属钐对酮类化合物与烯丙基或苄基卤代物的反应很有效, 可高产率地生成叔醇。此反应有很好的区位选择性和化学选择性, 与α, β-不饱和酮的反应未发现1, 4-加成产物生成, 与环上有卤素(Br, Cl)取代的芳香酮反应, 取代基不受影响。产物的形成可能通过了有机钐中间体。     

A catalytic asymmetric allylation of aldehydes with allyl trichlorosilane activated by a chiral tetradentate bis-sulfoxide

Chiral homoallylic alcohols are easily accessible by asymmetric allylation of aldehydes with allyl trichlorosilane in the presence of catalytic amounts of a chiral tetradentate bis-sulfoxide, as organocatalyst, whose synthesis is reported.     

(英)用微量热法研究一种新晶体与人血清白蛋白以及肝素钠相互作用的热动力学

本文使用氯乙酸乙酯和对羟基肉桂酸为原料,合成并纯化、重结晶得到一种新的无色棒状晶体化合物3-(4-(2-乙氧基-2-氧代乙氧基)苯基)丙烯酸(E)-2-乙氧基-2-氧乙基酯(EOPA)。EOPA的结构通过质谱和X-射线单晶衍射确认。结果显示,该晶体为三斜晶系,空间群为P1,其他相关晶体参数:a=8.835(5),b=13.707(8),c=15.265(9),α=92.087(7)°,β=104.289(7)°,γ=104.471(7)°,V=1725.0(17)3,晶胞中分子数Z=4,F(000)=712.0,晶体密度Dc=1.295mg/m3,化合物分子量Mr=μ=336.33。采用C80微量热计测试获得对应的反应常数(k),反应级数(n)和吉布斯自由能(ΔGΘ≠),数据显示EOPA与人血清白蛋白的结合与EOPA与肝素钠的结合相似。     

The effect of Cu2+ or Fe3+ on the noncovalent binding of rutin with bovine serum albumin by spectroscopic analysis

The interaction of rutin to bovine serum albumin (BSA) in aqueous solution was investigated by fluorescence spectra and ultraviolet-visible (UV-vis) spectra at pH 7.40. There are also some metal ions present in blood plasma, thus the research about the effect of metal ions on the interaction of drugs with proteins is crucial. Therefore, we have studied the effect of Cu2+ or Fe3+ on the interaction between rutin and BSA by using spectroscopic technique at pH 7.40, for the first time. The results of fluorescence titration indicated that rutin could quench the intrinsic fluorescence of BSA in a static quenching way. The binding sites number (n), the binding constant (K) and the spatial-distance (r) of rutin with BSA without or with Cu2+ or Fe3+ at 310 K were calculated. The result showed that the presence of Cu2+ or Fe3+ increased the binding constant and changed the binding distance between the acceptor and the donor, which possibly results from the formation of metal ions-BSA complex. The effect of rutin on the conformation of BSA was also analyzed using UV under experimental conditions. Furthermore, the fluorescence displacement experiments indicated that rutin is situated within subdomain IIA of BSA.