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1.
The fluorescence recovery after photobleaching (FRAP) method and the fluorescence correlation spectroscopy (FCS) have been applied on suspensions of highly charged colloidal spheres with a small content of rod-shaped tobacco mosaic virus (TMV) particles. Since these methods only determine the self-diffusion coefficient of the fluorescently labeled species, D(S) of the rods and the spheres could independently be measured. The ionic strength of the dispersion medium has been varied to measure self-diffusion of rods and spheres in dependence on the degree of order of the matrix spheres. In contrast to FRAP, which allows the determination of the long-time self-diffusion coefficient D(S) (L), FCS measures self-diffusion on a shorter time scale. Thus a comparison of the results that were obtained by FCS and FRAP, in combination with Brownian Dynamics simulations, gives insight into the time dependence of the self-diffusion coefficient of an interacting colloidal system. As the mean interparticle distance of the matrix is of the same order of magnitude as the length of a TMV rod, the rotational motion is influenced by the assembly of spheres around a TMV particle. Since FCS is sensitive both to translational and rotational motion, whereas FRAP, which probes the diffusion at much larger length scales, is only sensitive to the translational motion of TMV, the comparison of diffusion coefficients measured employing FRAP and FCS can give some insights in the rotational diffusion: the experimental data indicate a slowing down of the rotational motion of a TMV rod with increasing structural order of the matrix spheres.  相似文献   

2.
Using fluorescence correlation spectroscopy (FCS) we measure the translational diffusion coefficient of asphaltene molecules in toluene at extremely low concentrations (0.03-3.0 mg/L): where aggregation does not occur. We find that the translational diffusion coefficient of asphaltene molecules in toluene is about 0.35 x 10(-5) cm(2)/s at room temperature. This diffusion coefficient corresponds to a hydrodynamic radius of approximately 1 nm. These data confirm previously estimated size from rotational diffusion studied using fluorescence depolarization. The implication of this concurrence is that asphaltene molecular structures are monomeric, not polymeric.  相似文献   

3.
The translational diffusion coefficient D(trans) for rubrene, 9,10-bis(phenylethynyl)anthracene (BPEA), and tetracene in the fragile molecular glass-former sucrose benzoate (SB) (Tg=337 K) was studied as a function of temperature from Tg+3 K to Tg+71 K by use of the holographic fluorescence recovery after photobleaching technique. The values of D(trans) vary by five to six orders of magnitude in this temperature range. Contrary to the predictions of the Stokes-Einstein equation, the temperature dependence of probe diffusion in SB over the temperature range of the measurements is weaker than that of T/eta, where eta is the shear viscosity. In going from the crossover temperature Tx approximately 1.2Tg to Tg, D(trans)eta/T increases by factors of 2.4+/-0.2 decades for rubrene, 3.4+/-0.2 decades for BPEA, and 3.8+/-0.4 decades for tetracene. The decoupling between probe diffusion in SB and viscosity is characterized by the scaling law D(trans) approximately T/eta(xi), with xi=0.621 for tetracene, 0.654 for BPEA, and 0.722 for rubrene. Data for probe diffusion in SB are combined with data from the literature for probe diffusion in ortho-terphenyl and alphaalphabeta-tris(naphthyl)benzene in a plot of enhancement versus the relative probe size parameter rho(m)=(m(p)m(h))(1/3), where m(p) and m(h) are, respectively, the molecular weights of the probe and host solvent. The plot clearly shows a sharp increase in enhancement of translational diffusion at rho(m) approximately 1. By applying temperature shifts, D(trans) for probe diffusion in SB and the dielectric relaxation time tau(D) can be superimposed on a single master curve based on the Williams-Landel-Ferry equation. This suggests that the dynamics of probe diffusion in SB is described by the scaling relationship D(trans) approximately 1/tau(D)(T+DeltaT), where tau(D)(T+DeltaT) is the temperature-shifted dielectric relaxation time. The results from this study are discussed within the context of dynamic heterogeneity in glass-forming liquids.  相似文献   

4.
Analysis of related time-resolved fluorescence measurements can possibly lead to the determination of the kinetic parameters of excited-state processes. A deterministic identifiability analysis on an error-free fluorescence decay data surface has to be executed to verify whether the parameters of a particular model can be determined and may point to the minimal experimental conditions under which this will become possible. In this work, similarity transformation is chosen as an identifiability analysis approach because it also gives the explicit relationships between the true and alternative model parameters. Results are presented for two kinetic models of a reversible intermolecular two-state excited-state process in isotropic environments: (a) with coupled species-dependent rotational diffusion described by Brownian reorientation and (b) with added quencher. For model a, both spherically and cylindrically symmetric rotors, with no change in the principal axes of rotation in the latter, are considered. The fluorescence delta-response functions I(parallel)(t) and I(perpendicular)(t), for fluorescence polarized respectively parallel and perpendicular to the electric vector of linearly polarized excitation, are used to define the sum S(t) = I( parallel)(t) + 2 I( perpendicular)(t) and the difference D(t) = I(parallel)(t) - I(perpendicular)(t) function. The identifiability analysis is carried out using the S(t) and D(t) functions. The analysis involving S(t) shows that two physically acceptable possible solutions for the overall rate constants of the excited-state process exist. Inclusion of information from polarized fluorescence measurements on the rotational kinetic behavior contained in D(t) results in the unique set of rate constants and rotational diffusion coefficients when the rotational diffusion coefficients are different. For model b, it is shown that addition of quencher plays formally the same role as rotational diffusion as far as the identification is concerned. When the quenching rate constants are different, the rate constants of a reversible intermolecular two-state excited-state process with added quencher can be uniquely determined.  相似文献   

5.
NVT molecular dynamics simulations were performed on liquid o-terphenyl as a function of temperature in the range 320-480 K. Computed translational diffusion coefficients displayed the non-Arrhenius behavior expected of a fragile glass-forming liquid and were in good, semiquantitative agreement with experimental results. Rotational correlation functions calculated for various vectors within the molecule exhibited a very short time (0-1 ps) initial decay, followed by a reversal, which corresponds to free reorientation within the "solvent" cage prior to collision with a wall. Rotational correlation times of three orthogonal vectors fixed on the central benzene were close to equal at all temperatures, indicating nearly isotropic overall molecular reorientation. The average correlation times exhibited a non-Arrhenius temperature dependence and were in very good agreement with experimental values derived from 2D and 1H NMR relaxation times. Correlation times of vectors located on the lateral phenyl rings were used to calculate the "spinning" internal rotation diffusion coefficients, which were approximately twice as great as the overall rotational diffusion constants, indicating rapid internal rotation of the phenyl side groups over wide ranges of angle in the liquid.  相似文献   

6.
We present extensive molecular dynamics simulations of the motion of a single linear rigid molecule in a two-dimensional random array of fixed overlapping disklike obstacles. The diffusion constants for the center of mass translation, D(CM), and for rotation, D(R), are calculated for a wide range of the molecular length, L, and the density of obstacles, rho. The obtained results follow a master curve Drho(micro) approximately (L(2)rho)(-nu) with an exponent micro=-3/4 and 1/4 for D(R) and D(CM), respectively, that can be deduced from simple scaling and kinematic arguments. The nontrivial positive exponent nu shows an abrupt crossover at L(2)rho=zeta(1). For D(CM) we find a second crossover at L(2)rho=zeta(2). The values of zeta(1) and zeta(2) correspond to the average minor and major axis of the elliptic holes that characterize the random configuration of the obstacles. A violation of the Stokes-Einstein-Debye relation is observed for L(2)rho>zeta(1), in analogy with the phenomenon of enhanced translational diffusion observed in supercooled liquids close to the glass transition temperature.  相似文献   

7.
Brownian dynamics simulations of the behavior of suspensions of fibers demonstrate that the scaling of the rotational diffusivity with respect to the number density (nL3) is a sensitive function of the thickness and the parameter L2D(R0)/D(T0), where D(R0) is the rotational diffusivity at infinite dilution, D(T0) is the average center-of-mass diffusivity at infinite dilution, and L is the fiber length. Existing theories for the long-time rotational diffusivities of rigid fibers in the semidilute and concentrated regimes fail to accurately account for the relationship with the dilute values of the rotational and translational diffusivities of the various physical models used to simulate the fibers. The concentration regime studied in this work ranges from a number density of nL3 approximately 0-150, which is below the transition from an isotropic to nematic state. The effect of the fiber thickness was studied by performing simulations of rods with aspect ratios (fiber length over diameter) of 25, 50, and 500, as well as performing projections for infinitely thin fibers. The excluded volume of the rods was enforced through the use of short-range potentials. For a rod with an aspect ratio of 50 with a parameter of L2D(R0)/D(T0)=9, which corresponds to a slender-body model of the individual fibers, the rotational diffusivity (D(R)) scales as D(R)/D(R0) approximately (nL3)(-1.9) in the concentration regime of 70 < or = nL3 < or = 150. Similarly with a parameter of L2D(R0)/D(T0)=4, corresponding to a rigid-dumbbell model, the rotational diffusivity scales as D(R)/D(R0) approximately (nL3)(-1.1) over the same range of concentrations. For rods with aspect ratios of 25, it is observed that a difference in the scaling is seen for L2D(R0)/D(T0) approximately < 8, with higher values of this ratio exhibiting essentially the same scaling. Additional values of the ratio L2D(R0)/D(T0) were investigated to determine the overall behavior of the suspension dynamics with respect to this parameter. These findings resolve discrepancies between simulation results for rotational diffusivities reported by previous investigators and provide new insights for the development of an accurate theory for the diffusivity of rigid rods suspended in solution.  相似文献   

8.
A high-speed capillary electrophoresis mobility shift assay (CEMSA) for determining the binding ratios of DNA-protein complexes in solution is demonstrated. Single molecule fluorescence correlation spectroscopy (FCS) was used to resolve the bound and unbound fluorescently labeled DNA molecules as they flowed continuously through a fused silica capillary under the influence of an applied electric field. Resolution of the bound and unbound complexes was based on the difference in their electrophoretic mobilities, and was accomplished without the need to perform a chemical separation. Data sufficient to perform the analysis was acquired in less than 10 s, compared to the minutes that are normally needed to carry out such measurement via CE separation. The binding ratios were determined with 5 to 10% precision and agreed with the results obtained by CE separation within experimental error. The resolution of the CEMSA based FCS analysis (CEMSA-FCS) was significantly higher than for the analysis performed by conventional diffusional FCS, due to the higher mass sensitivity of the electrophoretic mobility compared to the translational diffusion coefficient. Fluorescently labeled 39-mer single stranded DNA (ssDNA) and the single stranded binding protein (SSB) from Escherichia coli was used as the model system. The dissociation constant of the ssDNA-SSB complex was estimated to be approximately 2 nM based on the CEMSA-FCS analysis.  相似文献   

9.
Equilibrium NPT and NVT molecular dynamics simulations were performed on liquid benzene over an extended range of temperature (from 260 to 360 K) using the COMPASS force field. Densities and enthalpies of vaporization (from cohesive energy densities) were within 1% of experiment at all temperatures. tumbling and spinning rotational diffusion coefficients, D(perpendicular) and D(parallel), computed as a function of temperature, agreed qualitatively with the results of earlier reported experimental and computational investigations. Generally, it was found that D(parallel)/D(perpendicular) approximately 1.4-2.5 and the activation energy for tumbling was significantly greater than for spinning about the C6 axis [Ea(D(perpendicular)) = 8.1 kJ mol(-1) and Ea(D(parallel)) = 4.5 kJ mol(-1)]. Calculated translational diffusion coefficients were found to be in quantitative agreement with experimental values at all temperatures [deviations were less than the scatter between different reported measurements]. In addition, translational diffusion coefficients were computed in the molecule-fixed frame to yield values for Dxy (diffusion in the plane of the molecule) and Dz (diffusion perpendicular to the plane). It was found that the ratio Dxy/Dz approximately 2.0, and that the two coefficients have roughly equal activation energies. This represents the first atomistic molecular dynamics study of translational diffusion in the molecular frame.  相似文献   

10.
(1)H spin-lattice relaxation rates R(1) = 1/T(1) have been measured for partly deuterated glycerol-h(5) diluted in fully deuterated glycerol-h(0) for progressively lower concentrations of glycerol-h(5). By means of the field cycling (FC) technique relaxation dispersion data, R(1)(ω), have been collected for several temperatures in the frequency range of 10 kHz-20 MHz. In order to disclose the spectral shape of the intra- and intermolecular relaxation, extrapolation of the relaxation data to the zero concentration limit has been performed. The paper confirms that the low frequency excess contribution to the total relaxation rate R(1)(ω) previously reported for several liquids is of intermolecular origin and reflects translational motion, whereas the high-frequency part is attributed to molecular rotation. Thus, intra- and intermolecular relaxation contributions are spectrally separated. The intermolecular relaxation itself contains also a contribution from rotational motion, which is due to non-central positions of the interacting nuclei in the molecule. This eccentricity effect is quantitatively reproduced by treating the intermolecular spectral density as a sum of translational-like (described by the free diffusion model) and rotational-like contributions (described by a Cole-Davidson function). Applying frequency-temperature superposition master curves as well as individual relaxation dispersion data, R(1)(ω), are analyzed. It is demonstrated that, in spite of the rotational influence, the translational diffusion coefficients, D(T), can be extracted from the (1)H relaxation dispersion which gives (1)H NMR relaxometry the potential to become a routine technique determining the diffusion coefficient in liquids.  相似文献   

11.
Experimental NMR measurements of the deuterium and (17)O T(1) relaxation times in deuterium-enriched liquid water have been performed from 275 to 350 K. These relaxation times can yield rotational correlation times of appropriate molecule-fixed unit vectors if the quadrupole coupling constants and asymmetry parameters are known. We determine the latter from ab initio studies of water clusters and experimental chemical shift measurements. We find that the rotational correlation time for the OD bond vector in D(2)(16)O varies from 5.8 ps at 275 K to 0.86 ps at 350 K, and that the rotational correlation time for the out-of-plane vector of dilute D(2)(17)O in D(2)(16)O varies from 4.4 ps at 275 K to 0.64 ps at 350 K. These results indicate that the rotational motion of water is anisotropic. Molecular dynamics simulations of liquid water are in good agreement with these experiments at the higher temperatures, but the simulation results are considerably faster than experiment at the lower temperatures.  相似文献   

12.
Supercollision relaxation of highly vibrationally excited pyrazine (E(vib) = 37,900 cm(-1)) with D35Cl is investigated using high-resolution transient IR diode laser absorption spectroscopy at 4.4 microm. Highly excited pyrazine is prepared by pulsed UV excitation at 266 nm, followed by rapid radiationless decay to the ground electronic state. The rotational energy distribution of the scattered DCl (v = 0,J) molecules with J = 15-21 is characterized by T(rot) = 755+/-90 K. The relative translational energy increases as a function of rotational quantum number for DCl with T(rel) = 710+/-190 K for J = 15 and T(rel) = 1270+/-240 K for J = 21. The average change in recoil velocity correlates with the change in rotational angular momentum quantum number and highlights the role of angular momentum in energy gain partitioning. The integrated energy-transfer rate for appearance of DCl (v = 0,J = 15-21) is k(2)(int) = 7.1x10(-11) cm3 molecule(-1) s(-1), approximately one-eighth the Lennard-Jones collision rate. The results are compared to earlier energy gain measurements of CO2 and H2O.  相似文献   

13.
Non-equilibrium molecular dynamics simulations of R and S enantiomers of 1,1-chlorofluoroethane, both for pure liquids and racemic mixtures, have been performed at 298 K in the absence and presence of both electromagnetic (e/m) and circularly polarised electric (CP) fields of varying frequency (100-2200 GHz) and intensity (0.025-0.2 V ?(-1) (rms)). Significant non-thermal field effects were noted in the coupling of rotational and translational motion; for instance, in microwave and far-infrared (MW/IR) e/m fields, marked increases in rotational and translational diffusion vis-à-vis the zero-field case took place at 0.025-0.1 V ?(-1) (rms), with a reduction in translational diffusion vis-à-vis the zero-field case above 0.1 V ?(-1) (rms) above 100 GHz. This was due to enhanced direct coupling of rotational motion with the more intense e/m field at the ideal intrinsic rotational coupling frequency (approximately 700 GHz) leading to such rapidly oscillating rotational motion that extent of translational motion was effectively reduced. In the case of CP fields, rotational and translational diffusion was also enhanced for all intensities, particularly at approximately 700 GHz. For both MW/IR and CP fields, non-linear field effects were evident above around 0.1 V ?(-1) (rms) intensity, in terms of enhancements in translational and rotational motion. Simulation of 90-10 mol. % liquid mixtures of a Lennard-Jones solvent with R and S enantiomer-solutes in MW/IR and CP fields led to more limited promotion of rotational and translational diffusion, due primarily to increased frictional effects. For both e/m and CP fields, examination of the laboratory- and inertial-frame auto- and cross-correlation functions of velocity and angular velocity demonstrated the development of explicit coupling with the external fields at the applied frequencies, especially so in the more intense fields where nonlinear effects come into play. For racemic mixtures, elements of the laboratory- and inertial-frame velocity and angular velocity were found to couple with each other to a lesser extent.  相似文献   

14.
Spectral differences between the cis and the trans isomer of a secondary amide peptide bond were used to follow the time course of the cis/trans isomerization of Gly-Gly, Gly-Ala, Ala-Gly, and Ala-Ala dipeptides in the UV/vis region at 220 nm. Isomerization rates and Eyring activation energies were calculated from pH- and LiCl-mediated solvent jump experiments. Rate constants were found to be in a narrow range of 0.29 to 0.64 s(-)(1) for the zwitterionic dipeptides at 25 degrees C. The isomerization rate is about 2-fold higher for the monoionic forms of Gly-Gly. The zwitterionic Gly-Gly has an activation enthalpy DeltaH() of 71.6 +/- 4.9 kJ mol(-)(1) that is in the range of the rotational barriers of aromatic side chain dipeptides that have been measured by (1)H NMR magnetization transfer experiments. Late stages of protein backbone rearrangements often involve crossing the energy barrier for rotational isomerization of imidic peptide bonds. Our findings are consistent with the idea that a wide range of secondary amide peptide bonds are also able to induce slow rate-limiting steps in protein restructuring.  相似文献   

15.
Femtosecond degenerate four-wave mixing (fs-DFWM) is applied for the measurement of rotational constants of cyclopropane (C3H6). The rotational coherence method yields a very accurate B0 = 20,093.322(12) MHz and centrifugal distortion constants D(J) and D(JK). To exploit the full resolution of the fs-DFWM method, the accuracy of the optical delay measurement was increased by nearly two orders of magnitude, including elimination of effects from the refractive index of air. The fs-DFWM molecular constants are comparable in accuracy to those from high-resolution infrared spectroscopy and are only surpassed by those of dipole distortion microwave spectroscopy. In parallel, the equilibrium structure, vibrationally averaged structure parameters and rotational constants were calculated using high-level ab initio methods and large basis sets. Combining these with the results of previous calculations and the measured rotational constants yields r(e)(C-C) = 1.5034(3) A, r(e)(C-H) = 1.0775(5) A, and alpha(e)(H-C-H) = 115.09(10) degrees.  相似文献   

16.
We report fluorescence blinking statistics measured from single CdSe nanorods (NRs) of seven different sizes with aspect ratios ranging from 3 to 11. This study also included core/shell CdSe/ZnSe NRs and core NRs with two different surface ligands producing different degrees of surface passivation. We compare the findings for NRs to our measurements of blinking statistics from spherical CdSe core and CdSe/ZnS core/shell nanocrystals (NCs). We find that, for both NRs and spherical NCs, the off-time probability distributions are well described by a power law, while the on-time probability distributions are best described by a truncated power law, P(tau(on)) approximately tau(on)(-alpha)e((-tau)(on)/(tau)(c)). The measured crossover time, tau(c), is indistinguishable within experimental uncertainty for core and core/shell NRs, as well as for core NRs with different ligands, for the same core size, indicating that surface passivation does not affect the blinking statistics significantly. We find that, at fixed excitation intensity, 1/tau(c) increases approximately linearly with increasing NR aspect ratio; for a given sample, 1/tau(c) increases very gradually with increasing excitation intensity. Examining 1/tau(c)versus the single-particle photon absorption rate for all samples indicates that the change in NR absorption cross section with sample size can account for some but not all of the differences in crossover time. This suggests that the degree of quantum confinement may be partially responsible for the aspect ratio dependence of the crossover time.  相似文献   

17.
The molecular motion of the planar bis(maleonitriledithiolato)nickel anion, Ni(mnt)(2)(-), has been studied as a function of temperature using electron spin resonance (ESR) in several polar solvents; they are ethyl alcohol, eugenol, dimethyl phthalate, tri-n-butyl phosphate, tris(2-ethyl-hexyl)phosphate, diglyme, and a dimethylformamide-chloroform mixed solvent. Calculated spectra in agreement with the experimental X-band spectra are obtained using axially symmetric reorientation when the long in-plane axis is the unique (parallel) axis of the rotational diffusion tensor with D parallel/D perpendicular = 3.0-4.0; D parallel and D perpendicular are the diffusion constants for reorientation about the parallel and perpendicular axes, respectively. The reorientational model required for the simulations is either in or close to the Brownian rotational diffusion limit. In the slow motional (low temperature) region, the spectra can be simulated using the glassy g values. As the temperature increases, however, agreement is obtained only if the intermediate g factor, g(y), for the non-axially symmetric Zeeman interaction increases while g(x), g(z), and the motional model remain unchanged; this scheme and others for which gx and g(z) are possibly temperature-dependent are discussed. The values of D perpendicular from the simulations are in general agreement with those from earlier analyses of the width of the central spectral feature. The simulations and width analyses indicate (as do electrochemical, conductivity, and vapor-phase osmometry data) that the paramagnetic species reorienting in solution has a shape similar to that of the Ni(mnt)(2)(-) ion.  相似文献   

18.
The sulfur molecules thiozone S3 and tetrasulfur S4 have been observed in a supersonic molecular beam in the centimeter-wave band by Fourier transform microwave spectroscopy, and in the millimeter- and submillimeter-wave bands in a low-pressure glow discharge. For S3 over 150 rotational transitions between 10 and 458 GHz were measured, and for S4 a comparable number between 6 and 271 GHz. The spectrum of S3 is reproduced to within the measurement uncertainties by an asymmetric top Hamiltonian with three rotational and 12 centrifugal distortion constants; ten distortion constants, but an additional term to account for very small level shifts caused by interchange tunneling, are required to reproduce to comparable accuracy the spectrum of S4. Empirical equilibrium (r(e)(emp)) structures of S3 and S4 were derived from experimental rotational constants of the normal and sulfur-34 species and vibrational corrections from coupled-cluster theory calculations. Quantum chemical calculations show that interchange tunneling occurs because S4 automerizes through a transition state with D2h symmetry which lies about 500 cm(-1) above the two equivalent C2upsilon minima on the potential energy surface.  相似文献   

19.
Kinetics of an association and dissociation of single elements with the effects of translational and rotational diffusion and angular limitations is discussed. Separated clusters embedded in a solution of orientable single elements are considered.Steady-state positional and angular distribution of single elements is calculated from the equation of translational-rotational diffusion and the boundary conditions proposed for orientation-limited association. Although spherical orientable elements are assumed, the model can be used for non-spherical particles with aspect ratios close to unity.Diffusion-limited rate constants of association and dissociation are proposed which depend on translational and rotational diffusion constants of single elements, the tolerance angle of the association, and the cluster size.Effective concentration of single elements and effective rate constants are expressed by the equilibrium and diffusion-limited rate constants. Effects of finite diffusion rates and finite tolerance angle are discussed.The equations of the kinetic model of nucleation are modified due to the diffusion-limited rate of the association.  相似文献   

20.
周超  杨京法  赵江 《高分子学报》2021,52(3):321-334
荧光关联光谱(fluorescence correlation spectroscopy,FCS)是一项用于研究体系动力学性质的统计光谱技术,随着它被引入材料与化学研究领域,近年来取得了大量全新的研究成果.该技术在高分子科学研究中也逐渐发挥出越来越大的作用,特别是在聚合物结构和动力学方面,这表明它在高分子领域的巨大潜力.本文将从FCS的基本原理、实验技巧以及在一些具有挑战性体系中的应用等方面展开,着重介绍它在高分子溶液,如聚电解质溶液、高分子混致不溶现象,以及不同的表界面体系中取得的新成果,展示FCS区别于其他传统技术的特点和优势.  相似文献   

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