Guanosine tetra- and pentaphosphate analysis: PEI-cellulose thin-layer purification and luciferin-luciferase liquid scintillation quantitation

A system is presented that can separate and quantitate in picomole amounts various guanosine tetra and penta phosphates namely guanosine 5′ triphosphate, 3′ diphosphate (pppGpp), guanosine 5′ tetraphosphate (ppppG), and diguanosine 5′ tetraphosphate (GppppG). It was found to be inactive with guanosine 5′ diphosphate, 3′ diphosphate (ppGpp), and a synthetic compound pCppG.The analytical detection system uses a crude firefly luciferin-luciferase system in which the various derivatives probably transphosphorylate ADP to produce the ATP necessary to emit light with the luciferin-luciferase system.The system should be useful in quantitating reactions in which guanosine tetraphosphates and pentaphosphates are involved. Their role is apparently one of control at either RNA polymerase or ribosomal levels and should be important in further research in molecular biology.     

Gradient tabu search

This paper presents a modification of the tabu search called gradient tabu search (GTS). It uses analytical gradients for a fast minimization to the next local minimum and analytical diagonal elements of the Hessian to escape local minima. For an efficient blocking of already visited areas tabu regions and tabu directions are introduced into the tabu list (TL). Trials with various well-known test functions indicate that the GTS is a very promising approach to determine local and global minima of differentiable functions. Possible application areas could be optimization routines for force field parameters or conformational searches for large molecules.     

A new treatment of the vibration–Rotation eigenvalue problem for a diatomic molecule

The problem of the determination of the vibration–rotation eigenvalue in diatomic molecules is considered. An eigenvalue equation totally independent from the eigenfunction is written for any potential, analytical or numerical. This equation uses uniquely the vibration–rotation canonical functions; its resolution is reduced to that of a simple and classical numerical problem. Examples of numerical applications for analytical (Morse) and numerical potentials are presented. It is shown that the vibrational eigenvalues deduced from the eigenvalue equation are within 10^–6 cm^–1 of the exact values. Comparison with conventional methods are presented and discussed.     

Analytical Expressions for Quantitative Scanning Electrochemical Microscopy (SECM)

Scanning electrochemical microscopy (SECM), is a recent analytical technique in electrochemistry, which was developed in the 1990s and uses microelectrodes to probe various surfaces. Even with the well‐known disc microelectrodes, the system geometry is not as simple as in regular electrochemistry. As a consequence even the simplest experiments, the so‐called positive and negative feedback approach curves, cannot be described with exact analytical expressions. This review gathers all the analytical expressions available in the SECM literature in steady‐state feedback experiments. Some of them are claimed as general expressions, other are presented as approximate. Their validity is discussed in the light of the current understanding and computer facilities.     

Gas chromatography with state-of-the-art micromachined differential mobility detection: operation and industrial applications

Ion mobility spectrometry (IMS) has potential analytical applications in very diverse fields such as chemical, petrochemical, environmental, and, more recently, in drug, chemical warfare agent, and explosives detection. Commercially available IMS instruments are based on time-of-flight (TOF) mass spectrometry. IMS is inherently suitable for field operation as it uses relatively simple microfluidic devices and operates at atmospheric pressure. It is portable, highly sensitive with tunable selectivity, yet can be produced at relatively low cost. Key limitations of this analytical detection technique are low duty cycle, ion cluster formation, short linear dynamic range, and restriction to only positive or negative ion collection in a single analysis. Microelectromechanical system, radio frequency modulated IMS (MEMS RF-IMS), also known as differential mobility spectrometry, has recently been developed and commercialized. The technology is based on IMS, and MEMS RF-IMS offers substantially better performance. In this study, the strengths and limitations of the recently introduced differential mobility detector when used with gas chromatography in trace analyses are discussed and illustrated with applications of industrial significance.     

A computer program for ranking analytical methods according to their fitness for purpose

A program for conducting automatic searches for analytical methods, selecting the most suitable ones according to quality requirements, and ranking them based on quality indices calculated from various pre-selected quality parameters is proposed. The program uses an externally updated database (Analytical Abstracts CD-ROMs or other) and customised quality schemes based on accuracy, precision, sensitivity, applicability to real samples, determination range (ratio), throughput and impact factor (from the Citation Index). It can, therefore, be used for a variety of purposes in analytical chemistry.     

The Determination of High Purity Niobium and Its Compounds By ICP-AES

Niobium and its compounds have many uses in metallurgical, electrical,communication and a lot of high technical fields. It is necessary to set up a fast and correct analytical method, which should be suited to the requirements of products. Under normal conditions, we have to use several testing methods to determine impurity elements in niobium. It took us a tedious analytical time. On the basis of studying niobium spectral lines, we develop the analytical method of determining impurity elements Al, Cr,Cu,Fe, Mo, Ni, Pb,Si, Ta,Ti, W, Zr in high purity niobium by high-resolution sequential ICP spectrometer.     

Development of a micro-X-ray fluorescence system based on polycapillary X-ray optics for non-destructive analysis of archaeological objects

A new micro-X-ray fluorescence (micro-XRF) system based on rotating anode X-ray generator and polycapillary X-ray optics has been set up in XOL Lab, BNU, China, in order to be used for analysis of archaeological objects. The polycapillary X-ray optics used here can focus the primary X-ray beam down to tens of micrometers in diameter that allows for non-destructive and local analysis of sub-mm samples with minor/trace level sensitivity. The analytical characteristics and potential of this micro-XRF system in archaeological research are discussed. Some described uses of this instrument include studying Chinese ancient porcelain.     

Selex: An expert system for evaluating published data on selenium in foods

Providing consistent and objective evaluation of published data on nutrient composition is critical for planning future analytical studies and for effective use of data. Based on a commercial expert system shell, a computer system of approximately 200 rules has been created to evaluate and ratre quantitatively published data on selenium in foods. The evaluation scheme uses five general categories for its rule-making process: number of samples, analytical method, sample handling, sampling plan, and analytical quality control. For each selenium value to be evaluted, rating ar assigned in each category by the expert system based on input which is derived from the information reportedin a given paper. A quality index, which is derived from the ratings, is a measure of the reliability of a given selenium value over all categories for a given study. The concepts used in developing SELEX have the potential of establishing criteria for evaluation of proposed analytical methods prior to their publication.     

Analysis of protein-protein interactions in a complex environment: capture of an analyte-receptor complex with standard additions of the receptor (CARSAR) approach

Traditional methods of analytical chemistry to detect an interaction between certain proteins in multicomponent mixtures (e.g. cell lysates, etc.) have limitations. This is due to difficulties in identification of a specific signal of an analyte (a molecule to be detected) against the background. In the present work, we propose the new analytical protocol for transducer-based sensors with a restricted sensitive area. It uses a combination of analyte-receptor complex precipitation with serial additions of the receptor (CARSAR). To test this new analytical strategy, we used a surface plasmon resonance technique to confirm an interaction between the Epstein-Barr virus-encoded nuclear antigen 6 and the mitochondrial ribosomal protein MRPS18-2.     

A phenomenological approach to modeling chemical dynamics in nonlinear and two-dimensional spectroscopy

We present an approach for calculating nonlinear spectroscopic observables, which overcomes the approximations inherent to current phenomenological models without requiring the computational cost of performing molecular dynamics simulations. The trajectory mapping method uses the semi-classical approximation to linear and nonlinear response functions, and calculates spectra from trajectories of the system's transition frequencies and transition dipole moments. It rests on identifying dynamical variables important to the problem, treating the dynamics of these variables stochastically, and then generating correlated trajectories of spectroscopic quantities by mapping from the dynamical variables. This approach allows one to describe non-Gaussian dynamics, correlated dynamics between variables of the system, and nonlinear relationships between spectroscopic variables of the system and the bath such as non-Condon effects. We illustrate the approach by applying it to three examples that are often not adequately treated by existing analytical models--the non-Condon effect in the nonlinear infrared spectra of water, non-Gaussian dynamics inherent to strongly hydrogen bonded systems, and chemical exchange processes in barrier crossing reactions. The methods described are generally applicable to nonlinear spectroscopy throughout the optical, infrared and terahertz regions.     

Multi-elemental characterization of Cuban natural zeolites

Concentrations of 38 elements in samples from four important Cuban zeolite beds have been obtained by Instrumental Neutron Activation (INAA) and X-ray Fluorescence analyses (XRFA). In comparison with other analytical techniques good agreement was reached. The concentration values of minor element Ba, Sr, Zn and Mn and 25 trace element (including 9 REE) are at the first time reported in Cuban zeolite. It is important for the zeolite evaluation in different industrial uses.     

4-(2-Pyridylazo)-resorcinol as a possible analytical reagent for the colorimetric estimation of cobalt,lead, and uranium ,

4-(2-Pyridylazo)-resorcinol has been synthesized, and its uses as an analytical reagent for the colorimetric estimation of cobalt, uranium and lead have been investigated. It has been shown to be the most sensitive reagent for the colorimetric estimation of cobalt, the most sensitive watersoluble reagent for the colorimetric estimation of uranium, and the first published water-soluble reagent for the colorimetric estimation of lead.     

Fitness for purpose in relation to specification limits

Frequently, the ultimate goal of an analytical measurement is to assess compliance in respect to a specification limit. So, the necessary requirement is to make a correct decision on the grounds of the measurement result. It is suggested a practical methodology to attain fitness for purpose results when specification limits are established for compliance assessment. It is based on a comparison between fitness for purpose uncertainty functions that define a high probability of conclusive correct decisions and a characteristic uncertainty function which describes the performance of the analytical system along concentration in a given condition of measurement. To attain fitness for purpose results, different replication programs are applied. Determinations of Zn, Mn and Cd in potable water are discussed as case studies. They represent different cases concerning relative position of detection and specification limits. A definition of fitness for purpose when specification limits are relevant is given. Quality of analytical results and analytical procedures should be associated with the concept of fitness for purpose.     

Super-resolution and Raman chemical imaging: from multiple low resolution images to a high resolution image

Imaging in Raman spectroscopy is a valuable tool for analytical chemistry. Although molecular characterization at micron level is achieved for many applications, it usually fails producing chemical images of micron size samples as expected in chemical, environmental and biological analysis. The aim of the work is to introduce the potential of super-resolution in vibrational spectroscopic imaging. This original chemometrics approach uses several low resolution images of the same sample in order to retrieve a higher resolution chemical image. It is thus possible to overcome in a certain way some physical and instrumentals limitations. To illustrate the methodology, sub-micronic details of a Si/Au sample are retrieved from low resolution images with different super-resolution algorithms. The better results are obtained with Iterative L2/Bilateral Total Variation regularization method. The use of a regularization procedure gives also better results since its first property is to preserve edges during the reconstruction of the super-resolved image. This concept of chemical image data processing should open new analytical opportunities.     

Determination of silicon in iron by thermal neutron activation

A new chemical separation procedure for the determination of silicon in iron after neutron activation was developed. It uses two separation steps, one on a cation exchange resin in HCl−HF-acetone medium, and the other on alumina at pH 9. The detection limit for silicon was 0.02 μg. This analytical procedure was applied to the control of the zone-melting purification of iron.     

Response surface methodology (RSM) as a tool for optimization in analytical chemistry

A review about the application of response surface methodology (RSM) in the optimization of analytical methods is presented. The theoretical principles of RSM and steps for its application are described to introduce readers to this multivariate statistical technique. Symmetrical experimental designs (three-level factorial, Box-Behnken, central composite, and Doehlert designs) are compared in terms of characteristics and efficiency. Furthermore, recent references of their uses in analytical chemistry are presented. Multiple response optimization applying desirability functions in RSM and the use of artificial neural networks for modeling are also discussed.     

Trends in the bioanalytical applications of microfluidic electrocapture

Downscaled analytical tools for sample preparation have offered benefits such as higher throughput, easier automation and lower sample/reagent consumption. Microfluidic electrocapture, which is a newly developed sample preparation/manipulation system, uses an electric field to trap and separate charged species without using any solid sorbent. The feasibility of using microfluidic electrocapture is reported for separation, clean-up, concentration, microreactions and complexation studies of proteins, peptides and other biologically important biomolecules. The instrumentation and applications of microfluidic electrocapture are reviewed and an overview is provided of future perspectives offered by the current and envisaged platforms.     

Analytical applications of quinoxalines

The uses of quinoxalines as analytical reagents are reviewed.