Determination of the crystal and molecular structure of 1,4-bis(p-chlorobenzoyl)-5-methylene-7-methyl-2,3,4,5-tetrahydro-1H-1,4-diazepine

The crystal and molecular structure of 1,4-bis(p-chlorobenzoyl)-5-methylene-7-methyl-2,3,4,5-tetrahydro-1H-1,4-diazepine has been determined by X-ray methods. The crystals are triclinic,P¯1,a = 10.605,b = 13.054,c = 7.351 Å, = 94.24, = 101.53, = 101.55 °,Z = 2. The structure was solved by direct methods, and refined by full-matrix least squares toR = 5.6% on 3495 observed reflections. The structure is of the enamide form with diacylation on nitrogen. There are no abnormal bond lengths or intermolecular contacts.     

The Synthesis and Crystal Determination of 3-Hydroxy-4-(4-methoxyphenyl)-5-(2-nitrophenyl)furan-2(5H)-one

Abstract  

The title compound, C₁₇H₁₃NO₆, was synthesized and structurally characterized by elemental analysis, MS, ¹H NMR and single crystal X-ray diffraction. It crystallizes in monoclinic system space group C 2/c with a = 27.981(6) ?, b = 12.996(3) ?, c = 8.0900(16) ?, β = 91.06(3)°, V = 2941.4(10) ?³, Z = 8, R ₁ = 0.0675, wR ₂ = 0.1626, and T = 298(2) K. The X-ray structure determination revealed that the center furanone ring is nearly coplanar with p-methoxybenzene ring and forms a dihedral angle of 87.2(1)° with the nitrobenzene ring. O–H···O Intermolecular hydrogen bonds link pairs of molecules into centrosymmetric dimers, making a graph set motif of R ₂²(10). The dimers are further assembled into a chain of edge-fused R ₄⁴(34) rings running along the [001] direction. The final three-dimensional supramolecular architecture is stabilized by weak π–π interactions.     

Synthesis and crystal structure of 4-(p-methoxyphenyl)-3, 5-bis(4-pyridyl)-1,2,4-triazole

The 4-(p-methoxyphenyl)-3,5-bis(4-pyridyl)-1,2,4-triazole has been synthesized and its crystal structure has been determined by X-ray diffraction methods. It crystallizes in the monoclinic space group P2₁/n, with a = 12.5832(6) Å, b = 7.0512(5) Å, c = 18.4669(12) Å, = 96.826(1)°, and D_calc = 1.345 g cm^–1 for Z = 4. In the structure, two pyridyl rings, phenyl ring, and triazole ring do not share a common plane. The most favored orientation of the pyridyl rings in the crystal is that their planes are inclined toward opposite directions with respect to the triazole ring.     

Synthesis and crystal structure elucidation of 1-(4-fluorobenzyl)-2-(4-cyanophenyl)-1H- benzimidazole-5-carbonitrile

The synthesis and spectral identification of 1-(4-fluorobenzyl)-2-(4-cyanophenyl)-1H-benzimidazole-5-carbonitrile (1) have been reported. IR, ¹H NMR, and EI mass spectral analysis were used for its spectral identification. The structure of 1 was confirmed by X-ray crystallographic studies. Intramolecular hydrogen bond occurs between the imidazole nitrogen and one of hydrogen of the florobenzene. The crystal packing is governed by C–HN intermolecular hydrogen bonds. The molecular structure observed in crystal and the optimised geometries at the HF level by doing semi-empirical and ab initio calculations were compared.     

Molecular and crystal structures of 2-amino-5-benzoyl-4-(2-nitrophenyl)-3-cyano-4,5-dihydrothiophene

The crystal structure of 2-amino-5-benzoyl-4-(2-nitrophenyl)-3-cyano-4,5-dihydrothiophene is determined by X-ray diffraction analysis. The unit cell parameters are as follows: a = 10.878(2) Å, b = 12.890(3) Å, c = 13.539(4) Å, α = 108.15(2)°, β = 99.26(2)°, γ = 107.13(2)°, V = 1656(2) ų, d _calcd = 1.410 g/cm³, Z = 4, and space group P1ˉ. The molecules occupy two systems of independent positions in the crystal. Similar to the compounds studied earlier in this series, the o-nitrophenyl substituent has a synperiplanar orientation relative to the hydrogen atom at the C(4) atom of the heterocycle. __________ Translated from Kristallografiya, Vol. 45, No. 2, 2000, pp. 282–285. Original Russian Text Copyright ? 2000 by Nesterov, Kuleshova, Samet, Shestopalov.     

Synthesis,characterization, and crystal structure analysis of 2-(2-hydroxy-3-methoxyphenyl)-1-(4-chlorophenyl)-4,5-diphenyl-1h-imidazole

The substituted imidazole C₂₈H₂₁ClN₂O₂, was prepared via multicomponent reactions and the product crystallized using dimethylformamide. The structure of the compound was established by elemental analysis, Fourier transform infrared spectroscopy, thermogravimetric analysis, UV-visible, proton nuclear magnetic resonance spectroscopy, and single-crystal X-ray diffraction. The molecule is crystallized in the tetragonal crystal system with the space group P4₃2₁2 and with unit cell parameters a = 12.246(4) Å, b = 12.246(4) Å, c = 31.781(2) Å, and Z = 8. The molecular and crystal structures of the title molecule are stabilized by the intramolecular interactions, O-H···N and C-H···N, and intermolecular interaction, C-H···O.     

1H,4H-1,4-Diphenylpyridazino[1,2-α]pyridazine-6, 9-dione

Crystals of C₂₀H₁₆N₂O₂ are orthorombic:P2₁2₁2₁,a = 28.1364(21),b = 7.6474(2),c = 7.5376(2) Å,Z = 4, = 6.4 cm^–1 (CuK radiation), andM = 316.36. The structure has been solved by direct methods and refined by two-block least-squares toR = R _w = 0.042. The conformation of ringB is a distorted envelope at N(10), and the phenyl rings have acis configuration with respect to the pyridazine ring. Thermal motion of the molecule has been analyzed in terms of the rigid-body TLS model.On leave from Departamento de Fisica, Facultad de Ciencias Exactas, U.N.L.P., calle 115 esq. 49, La Plata, Buenos Aires, Argentina.     

Crystal and molecular structure of 2,2′-diphenyl-4,4′-di(2-phenyl-2-propenyl)-4, 4′-bi-5(4H)thiazolone

Molecules of C₃₆H₂₈N₂O₂S₂ crystallize in the monoclinic space groupP2₁/c with cell dimensionsa = 8.9326(3),b = 20.0197(11),c = 17.0349(8) Å, and = 92.20(1) °,Z = 4,D _x = 1.276 g cm^–3, (CuK) = 18.16 cm^–1. The structure was solved by Patterson methods and refined by least-squares calculations to anR of 0.057 andR _w = 0.066 for all reflections. The main differences in the two halves of the dimer are due to the different torsion angles in the propenyl chain.     

The X-ray crystal structure of Hg(C6H4OMe-4) (C6F5): an unexpected twist

The X-ray crystal structure of Hg(C₆H₄OMe-4)(C₆F₅) reveals the first example of perpendicular rings in a diarylmercurial complex. Hg(C₆H₄OMe-4) (C₆F₅) crystallizes in monoclinic space group P2₁/c with a = 11.4004(14), b = 7.5683(9), c = 15.0247(18) Å, = 104.849 (2)° with calculated density 2.517 g cm^–3 for Z = 4.     

Synthesis, crystal structure, and molecular modeling (AM1) of Methyl 6-chloro-4-(2-chlorophenyl)-5-formyl-2-methyl-1, 4-dihydropyridine-3-carboxylate

The synthesis and structural characterization of Methyl 6-chloro-4-(2-chlorophenyl)-5-formyl-2-methyl-1,4-dihydropyridine-3-carboxylate is described. The structure was refined to R₁ = 0.0470 for 2665 reflections (with I > 2(I)). Crystal data: C₁₅H₁₃C₁₂NO₃, monoclinic,space group P2₁/c, a = 11.163(9), b = 14.484(8), c = 9.422(7) Å, V = 1512.9(19) ų, Z = 4. The results of crystallographic and molecular modeling (AM1) were compared. The Cl atom attached to the phenyl group has two possible orientations, having 75% (sp) and 25% (ap) occupancy, respectively. The molecules in the crystal are held together by means of intermolecular hydrogen bonds of the type N=H...O and by C=H...O interactions.     

Crystal Structure and Computational Study of 5-Ethyl-4-(4-Methoxyphenethyl)-4,5-Dihydro-3H-1,2,4-Triazol-3-One and 4-(4-Methoxyphenethyl)-5-Propyl-4,5-Dihydro-3H-1,2,4-Triazol-3-One

Crystallography Reports - Molecular structures of compounds 5-ethyl-4-(4-methoxyphenethyl)-4,5-dihydro-3H-1,2,4-triazol-3-one, (C13H17N3O2) (I) and...     

Crystal Structure of 4-Amino-3-(thiophen-2-ylmethyl)-1H-1,2,4-triazole-5(4H)one Monohydrate

The molecular structure of the 4-amino-3-(thiophen-2-ylmethyl)-1H-1,2,4-triazole-5(4H)one monohydrate was determined by X-ray diffraction. The compound crystallizes in the monoclinic sp. gr. C2/c with Z = 4 in the unit cell. The title compound is not planar. The dihedral angle between the thiophene and 1,2,4-triazole rings is 73.4(5)°. In the crystal structure, the molecules are connected by intermolecular N–H···O, N–H···N, O–H···O, and C–H···N type hydrogen bonds. The N–H···N and C–H···N hydrogen bonds link the molecules into infinite chains along the c axis.     

Synthesis and crystal structure of [Tb4(H2O)2](C2O4)2(C5H6O4)4

A terbium complex associating two ligands, oxalate and glutarate, was prepared under hydrothermal conditions at 200°C by treating an aqueous suspension of terbium oxalate decahydrate with glutaric acid and guanidinium carbonate. Its structure was solved by X-ray diffraction on a single crystal. It crystallizes in the monoclinic space group P2₁ with lattice constants, a = 9.514(1) Å, b = 9.0681(8) Å, c = 19.702(2) Å, and = 97.90(1)°. The terbium atoms and the oxalate ligands build dense chains which are connected by one side of the carboxylic group of some glutarate ligands, thus forming a sheet at the c level 0 and 1/2. These sheets are bridged by glutarate groups. The terbium atoms are ninefold coordinate with nine oxygen atoms of the ligands or with one water molecule and eight oxygen atoms of the ligands. Each polyhedron of the terbium atoms share one edge and one face of oxygen atoms with the two neighboring ones. The oxalate ligands are bischelating and bismonodentate. The coordination scheme of glutarate differs: either they are bismonodentate from one side and chelating and monodentate from the other side or they are chelating and monodentate from both sides.     

Molecular structure and reactivity of the 1,2-dihydrocarbazol-4(3H)-one: X-ray crystal structure of N-methyl and N-(p-methylbenzenesulfonyl) derivatives

Synthesis and reactivity analysis of the 1,2-dihydrocarbazol-4(3H)-one, and the N-methyl, N-tosyl and 2,2-dimethyl derivatives have been carried out. Molecular structures of the N-methyl and N-tosyl derivatives have been analyzed by X-ray diffraction. Crystals of the N-methyl derivative are monoclinic, space group P2₁/c,a=8.868(1),b=16.652(1),c=7.5440(4) Å, =113.657(3). Crystals of the N-tosyl derivative are monoclinic, P2₁/c,a=12.0016(3),b=8.9178(2),c=16.0485(4) Å, =104.372(2). An extended conjugation from the carbonyl group to the nitrogen atom and an envelope conformation for the common cyclohexenone fragment are evident in both cases. Oximation and Beckmann rearrangement, and etherification of the carbonyl group is reported.     

Hydrothermal synthesis and the crystal structure of borate cancrinite (Na,Ca)2[Na6(AlSiO4)6](BO3) · 2H2O

Transparent prismatic single crystals of borate cancrinite (Na,Ca)₂[Na₆(AlSiO₄)₆](BO₃) · 2H₂O are prepared through hydrothermal crystallization. The parameters of the hexagonal unit cell and intensities of 10806 reflections are measured on an Enraf—Nonius CAD4 automated diffractometer. The compound crystallizes in the hexagonal crystal system with the unit cell parameters a = 12.745(4) Å, c = 5.180(2) Å, V = 728.6(4) ų, and space group P6₃. The structure is determined by direct methods and refined using the full-matrix least-squares procedure in the anisotropic approximation for the non-hydrogen atoms. The refinement of the structure is performed to the final discrepancy factor R ₁ = 0.027 for 2889 unique reflections with I > 2 σ (I). In the structure of the borate cancrinite, the AlO₄ and SiO₄ tetrahedra form a zeolite-like framework in which twelve-membered hexagonal channels are occupied by sodium atoms and BO₃ groups, whereas six-membered channels are filled with sodium and calcium atoms and water molecules. The mean interatomic distances are found to be as follows: (Si-O)_mean = 1.614 Å and (Al-O)_mean = 1.741 Å in the AlO₄ and SiO₄ tetrahedra, (Na-O)_mean = 2.542 Å in the seven-vertex sodium polyhedra, and [(Na,Ca)-O]_mean = 2.589 Å in the ditrigonal bipyramids.     

Crystal structure of 3-amino-5-acetyl-4,7-dihydro-6-methyl-4-(2-nitrophenyl)-2-cyanothieno[2,3-b]-pyridine and specific features of its molecular packing in crystal

The molecular and crystal structures of 3-amino-5-acetyl-4,7-dihydro-6-methyl-4-(2-nitrophenyl)-2-cyanothieno[2,3-b]-pyridine is determined by X-ray diffraction. The unit-cell parameters are as follows: a = 14.68(1) Å, b = 8.704(5) Å, c = 25.36(1) Å, V = 3241(6) ų, d _calcd = 1.453 g/cm³, Z = 8(1,1), and space group Pna2₁. Theo-nitrophenyl substituent is synperiplanar relative to the hydrogen atom at the C(4) atom of the heterocycle. Two crystallographically independent reference molecules A and B in the structure can be considered a pair of the enantiomers related by an approximate noncrystallographic center of inversion. The degree of approximation of this pseudocenter is discussed. It is shown that the structure can be described as a combination of two systems of translationally equal layers. The pseudosymmetry of the crystal structure and the possibility of forming a similar molecular packing with a higher crystallographic symmetry are considered.     

The crystal structure of 5-methyl-1-(octahydro-1-iodo-1H-1-inden-4-yl)-1H-tetrazole

The title compound is C₁₁H₁₇N₄I, F.W.=330.20, monoclinic, space groupP2₁/a,a=11.586(2),b=10.617(1),c=10.417(1) Å, =94.567(2)°,Z=4,F(000)=652, (MoK)=0.7107 Å, (MoK)=2.31 mm^–1,V=1277.31 Å₃,D _C=1.71 gcm^–3,D _m=1.70 gcm^–3. The structurewassolved by Patterson and Fourier methods and refined to anR value 0.031 for 1620 observed reflections. The connectivity and conformation of the addition product ofcis-1,5-cyclononadiene and iodine azide was determined by X-ray analysis. The reaction product contains a chair-conformation cyclohexane ring that iscis fused to a cyclopentane ring. The cyclopentane ring has an envelope conformation and an equatorially oriented iodine substituent. A planar tetrazole ring is axially substituted on the cyclohexane ring. The plane of the tetrazole ring makes a dihedral angle of 69.6° with the average plane of the carbon atoms of the cyclohexane ring.     

The crystal and molecular structure of bis(melamine)silver(I) perchlorate, Ag(C3H6N6)2ClO4

The crystal structure of the title compound, Ag(mela)₂ClO₄ (mela = melamine), has been investigated by X-ray diffraction techniques, the crystals are triclinic, space group P1¯, with a = 5.236(2), b = 7.5385(9) c = 19.063(3) Å, = 99.91(1), = 90.53(2), = 108.32(2)° and Z = 2. The Ag atom has a coordination geometry with two strong bonds (2.162(2) and 2.179(4) Å) to the nitrogen of the melamines and two weak bonds (2.776(4) and 2.785(4) Å) to oxygen atoms of the ClO^– ₄anions. The N—Ag—N vector is markedly nonlinear (angle at Ag 167.7(2)°).