Structural characterization of Am incorporated into calcite: a TRLFS and EXAFS study

Calcite homogeneously doped with Am(III) and Cm(III) was synthesized in a mixed-flow reactor. The mechanism of incorporation of these actinides (An) into calcite was investigated by time-resolved laser fluorescence spectroscopy. Two different An(III)/calcite species were found. One has been identified as ions bonded onto the calcite surface. The second An(III) species has lost its complete hydration sphere and is incorporated into the calcite bulk structure. Both Cm(III)/calcite and Am(III)/calcite complexes have been characterized by their fluorescence emission spectra and lifetimes. Structural parameters of the incorporated Am(III) species determined by EXAFS indicate a coordination number of 6.3+/-0.6 and distances of 2.40+/-0.01 A for the first AmO shell.     

Structural variations across the lanthanide series of macrocyclic DOTA complexes: insights into the design of contrast agents for magnetic resonance imaging

It was early shown that the macrocyclic Ln(DOTA) complexes (DOTA = 1,4,7,10-tetra-azacyclododecane-N,N',N' ',N' "-tetraacetic acid) exists in solution as a mixture of two enantiomeric pairs of diastereoisomers differing in the ligand conformation, namely, square antiprismatic (SA) and twisted square antiprismatic (TSA) geometries, respectively. Later, extensive (1)H NMR investigations suggested that a coordination change may be superimposed on this conformational equilibrium involving two additional structures in which the metal ion possesses a coordination number of eight (CN 8). It was predicted that these two species, lacking the apical coordinated water molecule, would maintain the SA and TSA coordination geometries, and therefore, they have been labeled as SA' and TSA', respectively. In this work we report the X-ray solid-state crystal structure determination of six Ln(DOTA) complexes representative of all four coordination geometry typologies deduced from NMR solution studies. A distinctive structural feature that discriminates SA (and SA') and TSA (and TSA') structures is represented by the twist angle between the two square planes of the antiprism, the basal four nitrogen, and the apical four oxygen planes. [Ce(DOTA)(H(2)O)](-) displays a TSA structural typology with a twist angle of 25 degrees and a Ce-O(water) distance of 2.59 A. The SA-type structure has been found in the case of complexes with Pr(III), Nd(III), and Dy(III), where the twist angle is 39, 39, and 38 degrees, respectively, and the metal-water oxygen distance varies significantly (Pr-O(w) 2.529 A; Nd-O(w) 2.508 A; and Dy-O(w) 2.474 A). [Tm(DOTA)](-) displays a TSA'-type structure with a twist angle of 24 degrees. As compared with the TSA structure of the corresponding Ce(III) complex, the Tm(III) complex shows an overall marked shrinkage of all metal-nitrogen and metal-oxygen distances (ca. 0.2 A), which reflects the contraction of the metal ionic radius across the series but also the effect associated with the decrease of the CN from 9 to 8. In [Sc(DOTA)](-), the even smaller ionic radius of Sc(III) shifts the geometry of the coordination cage to the more compact SA' typology with a twist angle of 41 degrees, a value very similar to that found in the SA structures of lanthanide(III) ions with CN 9. Finally, an investigation was made into the hydration spheres of the complexes with SA and TSA geometries to account for the experimental evidence of a markedly different rate of water exchange for the two isomeric structures. This is of fundamental importance to the understanding of the corresponding Gd(III) complexes as MRI contrast agents.     

Sparkle/AM1 structure modeling of lanthanum (III) and lutetium (III) complexes

The sparkle/AM1 model for the quantum chemical prediction of coordination polyhedron crystallographic geometries from isolated lanthanide complex ion calculations, defined recently for Eu(III), Gd(III), and Tb(III) (Inorg. Chem. 2005, 44, 3299) is now extended to La(III) and Lu(III). Thus, for each of the metal ions we chose a training set of 15 complexes that possess various representative ligands of high crystallographic quality (R factor < 0.05 Angstroms) and oxygen and/or nitrogen as coordinating atoms. In the validation procedure we used a set of 60 more La(III) coordination compound structures, as well as 15 more Lu(III) coordination compound structures, all of high crystallographic quality. For both the 75 La(III) compounds and the 30 Lu(III) compounds, the Sparkle/AM1 unsigned mean error, for all interatomic distances between the metal ions and the ligand atoms of the first sphere of coordination, is 0.08 Angstroms, thus comparable to the accuracy normally achievable by present day ab initio/ECP calculations, while being hundreds of times faster.     

Statistical and molecular mechanics analysis of the effects of changing donor type on bond length in the two series [Co(III)N(n)O(6-n)] and [Ni(II)N(n)O(6-n)] (n = 0-6): a new route to bond-stretch Parameters

Changes in bond lengths across the series of complexes [Co(III)N(n)O(6-n)] and [Ni(II)N(n)O(6-n)], (n = 0-6) have been examined by a statistical analysis of the bond lengths in 256 Co(III) and 205 Ni(II) complexes. In both cases a systematic reduction in both metal-N and metal-O bond lengths is observed as oxygen donors replace nitrogen in the coordination sphere. In the case of Co(III), the reduction in bond lengths is linear across the series, whereas, in the case of Ni(II), it is more asymptotic in nature. It was found that this systematic change to the inner coordination sphere produced a much larger range of bond lengths than had previously been observed by changes to the outer sphere. The trends across the two series were reproduced using molecular mechanics; however, the magnitude of the change was not initially predicted correctly in either case. Alterations to molecular mechanics parameters that reproduced the trends in the [Co(III)N(n)O(6-n)] series also resulted in a significant overall improvement in the predictions of Co(III)-N bond lengths in a series of Co(III) hexaamines, with all being reproduced within 0.006 A. This improvement was taken as an indication that the bond-length reduction across the series is largely steric in origin.     

ESR,spectroscopic, and quantum-chemical studies on the electronic structures of complexes formed by Cu(I) with radicals

The optical and ESR spectra have been examined for complexes of Cu(I) with various radicals, which contain various numbers of Cl ions in the central-atom coordination sphere. The spin-Kamiltonian parameters have been determined for all these radical complexes, and the observed ESR spectra have been compared with those calculated with allowance for second-order effects. The observed values for the isotropic and anisotropic components of the HFI constant from the central ion have been used to estimate the contributions from the 4s and 3d² _z orbitals of the copper ion to the unpaired-electron MO. Quantum-chemical calculations have been performed by the INDO method on the electronic structures and geometries of complexes formed by CH₂OH with Cu(I) for various Cl contents in the coordination sphere. The radical is coordinated by the orbital on the carbon atom, and the stabilities of the radical complexes decrease as the number of Cl ions in the coordination sphere increases. A geometry close to planar is proposed for the CuCl₄ ^–3 fragment in a complex containing four Cl ions.Translated from Teoreticheskaya i Éksperimental'naya Khimiya, Vol. 22, No. 1, pp. 32–38, January–February, 1986.     

Quantum chemical investigation of hyperfine coupling constants on first coordination sphere water molecule of gadolinium(III) aqua complexes

Hyperfine interactions (HFI) on the nuclei of the first coordination sphere water molecules in a model [Gd(H(2)O)(8)](3+) aqua complex and in the magnetic resonance imaging contrast agent [Gd(DOTA)(H(2)O)](-) were studied theoretically. Density functional theory (DFT) calculations combined with classical molecular dynamics (MD) simulations have been used in order to take into account dynamic effects in aqueous solution. DFT relativistic calculations show a strong spin-polarization of the first coordination sphere water molecules. This spin-polarization leads to a positive (17)O isotropic hyperfine coupling constant (A(iso)((17)O) = 0.58 +/- 0.11 MHz) and to a significant increase of the effective distance (r(eff)(Gd-O) = 2.72 +/- 0.06 A) of dipolar interaction compared to the mean internuclear distance (r(Gd-O) = 2.56 +/- 0.06 A) obtained from the MD trajectory of [Gd(DOTA)(H(2)O)](-) in aqueous solution. The point-dipole model for anisotropic hyperfine interaction overestimates therefore the longitudinal relaxation rate of the (17)O nucleus by approximately 45%. The (1)H isotropic hyperfine coupling constant of the bound water molecule is predicted to be very small (A(iso)((1)H) = 0.03 +/- 0.02 MHz), and the point-dipole approximation for first coordination sphere water protons holds. The calculated hyperfine parameters are in good agreement with available experimental data.     

1H, 13C and 15N NMR coordination shifts in gold(III), cobalt(III), rhodium(III) chloride complexes with pyridine, 2,2'-bipyridine and 1,10-phenanthroline

Au(III), Co(III) and Rh(III) chloride complexes with pyridine (py), 2,2'-bipyridine (bpy) and 1,10-phenanthroline (phen) of the general formulae [M1LCl3], trans-[M2L4Cl2]+, mer-[M2L3Cl3], [M1(LL)Cl2]+, cis-[M2(LL)2Cl2]+, where M1=Au; M2=Co, Rh; L=py; LL=bpy, phen, were studied by 1H--13C HMBC and 1H--15N HMQC/HSQC. The 1H, 13C and 15N coordination shifts (the latter from ca-78 to ca-107 ppm) are discussed in relation to the type of metal, electron configuration, coordination sphere geometry and the type of ligand. The 13C and 15N chemical shifts were also calculated by quantum-chemical NMR methods, which reproduced well the experimental tendencies concerning the coordination sphere geometry and the ligand type.     

An Ytterbium(II) Complex with Triethanolamine

Bis(triethanolamine)ytterbium(II) diperchlorate was obtained by electrochemical reduction. The metal ion is surrounded by two triethanolamine molecules only, and its first sphere of coordination consists of six O and two N atoms. The compound shows weak luminescence at 77 K with a very broad emission band (488—667 nm). The complexation of triethanolamine shifts the Yb (III) reduction potential of 0.46 V towards more negative values.     

非负矩阵分解法研究三价铁离子与试钛灵形成的多组分体系

采用分光光度法测量三价铁离子与邻苯二酚-3,5-二磺酸钠(试钛灵)的配位数和稳定常数是常见的大学化学教学实验之一。我们发现,随着溶液中三价铁离子与试钛灵配比的改变,配合物的吸收光谱峰位置发生显著位移,推断配位数不唯一。用非负矩阵分解法对系列光谱数据进行分析,获取主要成分的特征光谱和它们的化学配比,结果显示体系中包含两种产物,分别对应一配位和二配位两种形式。然而,教材要求给出一个正整数的配位数,实验设计的合理性值得探讨。     

Magnetic anisotropy in Ni(II)-Y(III) binuclear complexes: on the importance of both the first coordination sphere of the Ni(II) ion and the Y(III) ion belonging to the second coordination sphere

The synthesis of a new Ni(II)-Y(III) binuclear complex with a marked elongation axis in the first coordination sphere of the Ni(II) ion is presented. Its zero-field splitting (ZFS) is studied by means of magnetic data and state-of-the-art ab initio calculations. A good agreement between the experimental and theoretical ZFS parameter values is encountered, validating the whole approach. The magnetic anisotropy axes are extracted from the ab initio calculations, showing that the elongation axis around the Ni(II) ion corresponds to the hard axis of magnetization and that the sign of the axial D parameter is imposed by this axis. The Ni-Y axis is found to be an easy axis of magnetization, which is, however, not significant according to the sign of D. The already reported [(H(2)O)Ni(ovan)(2)(μ-NO(3))Y(ovan)(NO(3))]·H(2)O (ovan = o-vanillin) complex is then revisited. In this case, the elongation axis in the Ni(II) coordination sphere is less marked and the ZFS is dominated by the effect of the Y(III) ion belonging to the second coordination sphere. As a consequence, the D parameter is negative and the low-temperature behavior is dominated by the Ni-Y easy axis of magnetization. A competition between the first coordination sphere of the Ni(II) ion and the electrostatic effect of the Y(III) ion belonging to the second coordination sphere is then evidenced in both complexes, and the positive and negative D parameters are then linked to the relative importance of both effects in each complex.     

Structure of the Aqua Ions and Fluoride Complexes of Uranium(IV) and Thorium(IV) in Aqueous Solution an EXAFS Study

The structures of aqueous M(4+)(aq) and MF(3+)(aq), where M is uranium(IV) or thorium(IV), have been determined by L(III) edge EXAFS using data from solutions of 1.5 M HClO(4) in which the M(IV) concentrations ranged from 0.03 to 0.3 M. A least-squares refinement of the data for the aqua ions indicated 10.8 +/- 0.5 water molecules in the first hydration sphere of both ions and M-O bond distances for U(IV) and Th(IV) of 2.42 +/- 0.01 and 2.45 +/- 0.01 ?, respectively. By considering both previous structure information and the EXAFS data, we selected N = 10 +/- 1 as the most likely coordination number of both M(IV) aqua ions. EXAFS measurements from acidic aqueous uranium(IV) and thorium(IV) solutions containing fluoride show that large changes in the first coordination sphere occur. The experimental data indicates an asymmetrical distribution of the distances, probably as a result of differing M-F and M-O bond lengths. These can be described by a model that contains two different bond distances, one M-F distance at 2.10 ? and one M-O distance at 2.45 ? for U(IV); for Th(IV), the corresponding distances are 2.14 and 2.48 ?. The total coordination number in this model is unchanged from the aqua ions, i.e., 10 +/- 1.     

A new class of CVD precursors to metal borides: Cr(B3H8)2 and related octahydrotriborate complexes

Treatment of CrCl3 with sodium octahydrotriborate, NaB3H8, affords a thermally unstable purple liquid thought to be a chromium(III) hydride of stoichiometry CrH(B3H8)2. This hydride converts rapidly at room temperature to the chromium(II) complex Cr(B3H8)2, which adopts a square-planar structure in which four hydrogen atoms form the coordination sphere of the chromium atom. This chromium(II) species forms six-coordinate Lewis base adducts Cr(B3H8)2L2, where L is Et2O, thf, or PMe3; the first two of these adopt trans geometries, whereas the latter is cis. Volatile Cr(B3H8)2 is the first homoleptic transition metal complex of the octahydrotriborate anion, and it readily forms CrB2 thin films by CVD at 250 degrees C.     

Thermodynamic and spectroscopic studies of lanthanides(III) complexation with polyamines in dimethyl sulfoxide

The thermodynamic parameters of complexation of Ln(III) cations with tris(2-aminoethyl)amine (tren) and tetraethylenepentamine (tetren) were determined in dimethyl sulfoxide (DMSO) by potentiometry and calorimetry. The excitation and emission spectra and luminescence decay constants of Eu3+ and Tb3+ complexed by tren and tetren, as well as those of the same lanthanides(III) complexed with diethylenetriamine (dien) and triethylenetetramine (trien), were also obtained in the same solvent. The combination of thermodynamic and spectroscopic data showed that, in the 1:1 complexes, all nitrogens of the ligands are bound to the lanthanides except in the case of tren, in which the pendant N is bound. For the larger ligands (trien, tren, tetren) in the higher complexes (ML2), there was less complete binding by available donors, presumably due to steric crowding. FT-IR studies were carried out in an acetonitrile/DMSO mixture, suitably chosen to follow the changes in the primary solvation sphere of lanthanide(III) due to complexation of amine groups. Results show that the mean number of molecules of DMSO removed from the inner coordination sphere of lanthanides(III) is lower than ligand denticity and that the coordination number of the metal ions increases with amine complexation from approximately 8 to approximately 10. Independently of the number and structure of the amines, linear trends, similar for all lanthanides, were obtained by plotting the values of DeltaGj degrees, DeltaHj degrees, and TDeltaSj degrees for the complexation of ethylenediamine (en), dien, trien, tren, and tetren as a function of the number of amine metal-coordinated nitrogen atoms. The main factors on which the thermodynamic functions of lanthanide(III) complexation reactions in DMSO depend are discussed.     

Structural diversity of yttrium(III) halide complexes

X-ray crystallographic data on yttrium(III) compounds containing halide (pseudohalide) ligands in the coordination sphere have been summarized and systematized. Trends in the change in the coordination number (CN) and the coordination polyhedron geometry, as well as specific features of the central ion environment in monomeric, dimeric, and polymeric complexes, have been considered. 139 references.     

Enterobactin protonation and iron release: structural characterization of the salicylate coordination shift in ferric enterobactin

The siderophore enterobactin (Ent) is produced by many species of enteric bacteria to mediate iron uptake. This iron scavenger can be reincorporated by the bacteria as the ferric complex [Fe(III)(Ent)](3)(-) and is subsequently hydrolyzed by an esterase to facilitate intracellular iron release. Recent literature reports on altered protein recognition and binding of modified enterobactin increase the significance of understanding the structural features and solution chemistry of ferric enterobactin. The structure of the neutral protonated ferric enterobactin complex [Fe(III)(H(3)Ent)](0) has been the source of some controversy and confusion in the literature. To demonstrate the proposed change of coordination from the tris-catecholate [Fe(III)(Ent)](3)(-) to the tris-salicylate [Fe(III)(H(3)Ent)](0) upon protonation, the coordination chemistry of two new model compounds N,N',N'-tris[2-(hydroxybenzoyl)carbonyl]cyclotriseryl trilactone (SERSAM) and N,N',N'-tris[2-hydroxy,3-methoxy(benzoyl)carbonyl]cyclotriseryl trilactone (SER(3M)SAM) was examined in solution and solid state. Both SERSAM and SER(3M)SAM form tris-salicylate ferric complexes with spectroscopic and solution thermodynamic properties (with log beta(110)() values of 39 and 38 respectively) similar to those of [Fe(III)(H(3)Ent)](0). The fits of EXAFS spectra of the model ferric complexes and the two forms of ferric enterobactin provided bond distances and disorder factors in the metal coordination sphere for both coordination modes. The protonated [Fe(III)(H(3)Ent)](0) complex (d(Fe)(-)(O) = 1.98 A, sigma(2)(stat)(O) = 0.00351(10) A(2)) exhibits a shorter average Fe-O bond length but a much higher static Debye-Waller factor for the first oxygen shell than the catecholate [Fe(III)(Ent)](3)(-) complex (d(Fe)(-)(O) = 2.00 A, sigma(2)(stat)(O) = 0.00067(14) A(2)). (1)H NMR spectroscopy was used to monitor the amide bond rotation between the catecholate and salicylate geometries using the gallic complexes of enterobactin: [Ga(III)(Ent)](3)(-) and [Ga(III)(H(3)Ent)](0). The ferric salicylate complexes display quasi-reversible reduction potentials from -89 to -551 mV (relative to the normal hydrogen electrode NHE) which supports the feasibility of a low pH iron release mechanism facilitated by biological reductants.     

Comparative review of structural parameters of the nearest surrounding of monoatomic cations in water and methanol media

Literature data on structure of coordination sphere of selected monoatomic cations in aqueous and methanol solutions have been reviewed and compared. The following structural parameters have been considered: coordination number, interparticle distances, the second coordination sphere features, and ionic association type. It has been revealed that for doubly charged ions the parameters of the first coordination sphere are similar in the both solvents. The second coordination sphere of the same cation consists of fewer solvating molecules located farther from the ion in the case of methanol as compared to water.     

Synthesis,spectral, DFT calculations and antibacterial studies of Fe(III) complexes of new fluorescent Schiff bases derived from imidazo[4',5':3,4]benzo[1,2‐c]isoxazole

New fluorescent heterocyclic ligands were synthesized by the reaction of 8‐(4‐chlorophenyl)‐3‐alkyl‐3H‐imidazo[4',5':3,4]benzo [1,2‐c]isoxazol‐5‐amine with p‐hydroxybenzaldehyde and p‐chlorobenzaldehyde in good yields. The coordination ability of the ligands with Fe³⁺ ion was examined in an aqueous metanolic solution. Schiff base ligands and their metal complexes were characterized by elemental analyses, IR, UV–vis, mass, and NMR spectra. The optical properties of the compounds were investigated and the results showed that the fluorescence of all compounds is intense and their obtained emission quantum yields are around 0.15 – 0.53. Optimized geometries and assignment of the IR bands and NMR chemical shifts of the new complexes were also computed by using density functional theory (DFT) methods. The DFT‐calculated vibrational wavenumbers and NMR chemical shifts are in good agreement with the experimental values, confirming suitability of the optimized geometries for Fe(III) complexes. Also, the 3D‐distribution map for HOMO and LUMO of the compounds were obtained. The new compounds showed potent antibacterial activity and their antibacterial activity (MIC) against Gram‐positive and Gram‐negative bacterial species were also determined. Results of antibacterial test revealed that coordination of ligands to Fe(III) leads to improvement in the antibacterial activity.     

Conformational/configurational analysis of all the binding geometries of cobalt(III) bleomycin

No crystal structure of metallobleomycin (BLM) exists, and the exact coordination mode of the ligand is unknown. To date, spectroscopic investigations of BLM complexes and crystal structures of BLM models have been used to propose its metal coordination sites. This has led to contradictory interpretations of the metal coordination sphere in BLM. Inorganic molecular mechanics and configurational/conformational searches were used to analyze HOO-CoBLM A2, H2O-CoBLM A2, and HOO-CoPEP with commonly proposed binding geometries. The lowest energy binding geometry found was one with the mannose carbamoyl bound to the cobalt ion. The Monte Carlo dihedral and translational variational searches were able to find most of the configurations available to cobalt(III) bleomycin in the three binding geometries examined.     

Strongly photoluminescent Eu(III) tetrazolate ternary complexes with phosphine oxides as powerful sensitizers

The Eu(III) cation forms electrically neutral photoluminescent complex with 5-(2-pyridyl-1-oxide)tetrazolate (PTO) anion. Although the photoluminescence properties of such tertiary Eu(III) and Tb(III) complexes were not as high (13 and 31% photoluminescence quantum yield, respectively) as reported for other diketonate lanthanide complexes probably because of high number of nitrogen atoms involved in PTO which leads to attachment of water molecules, reducing the luminescence quantum yield with vibrational and rotational quenching. Here, we report the removal of quencher molecules from the coordination sphere of tris–europium tetrazolate oxide complex by replacing them with various phosphine oxides which leads to improved photoluminescence quantum yield for the complexes by acting as auxiliary co-ligands with that of the main antenna 5-(2-pyridyl-1-oxide)tetrazolate. The coordination sphere in these complexes can be complemented by aromatic phosphine oxides to provide highly photoluminescent Eu(III) complexes. The highest quantum yield was 38% in 3 [Eu(PTO)₃·DPEPO](H₂O)₅ containing bis(2-(diphenylphosphino)phenyl) ether oxide (DPEPO) as compared to tris–europium complex with 5-(2-pyridyl-1-oxide)tetrazolate.