Theoretical Study of the Intramolecular Proton Transfer in the Tautomers of Cytosine Assisted by Water

Ab initio MP2 and DFT studies on the tautomers of cytosine and the related hydrated tautomers have been carried out. The ground‐state structures of four tautomers of cytosine and related transition states were fully optimized. The vibrational frequency analysis was performed on all the optimized structures. Detailed intrinsic reaction coordinate (IRC) calculations were carried out to guarantee the optimized transition‐state structures being connected to the related tautomers. We obtained the relative stability order for the tautomers of cytosine and the related hydrated tautomers. In the isolated and hydrated condition, the bond types of C(2) O(7) and C(4) N(8) greatly affect the stability of the cytosine tautomers. Moreover, we have explored the influence of the water molecules on the intramolecular proton transfer between the keto and enol forms of the cytosine tautomers. The first water molecule obviously decreases the isomerization activation energy for the monohydrated cytosine tautomers. It is shown that the isomerization energy barrier changes only a little when the second and third water molecules are added in the reaction loop. The solvent effects have an obvious influence on the proton‐transfer barrier of the isolated cytosine. However, the solvent effects seem to be insignificant for the isomerization energy barriers of the monohydrated, dihydrated and trihydrated cytosine. The water molecule in these complexes can be looked on as the explicit water. Therefore, the explicit water model may be more credible to explore the intramolecular proton transfer, in comparison with the PCM which is the implicit water model.     

3-羰基吡唑质子转移过程的理论研究

采用密度泛函B3LYP／6—311G^＊＊方法,对3-羰基吡唑几何构型进行了全自由度优化,获得了它们的几何结构和电子结构．计算并考察了3-羰基吡唑的两种构象即syn和anti构象的稳定性以及3-羰基吡唑进行结构互变的质子转移过程的四种可能途径：（a）分子内质子转移;（b）水助质子转移;（C）同种二聚体双质子转移;（d）异种二聚体双质子转移．计算结果表明3-羰基吡唑的syn构象中N2-H型的稳定性大于N1-H型,进行质子转移时途径（C）所需要的活化能最小（52．78kJ／mol）,途径（a）所需要的活化能最大（200．59kJ／mol）;3,羰基吡唑的。anti构象中N1-H型的稳定性大于N2-H型,进行质子转移时途径（d）所需要的活化能最小（61．09kJ／mol）,途径（a）所需要的活化能最大（204．15kJ／mol）．     

MP2 Study on the Proton Transfer Mechanism of Glycine Assisted by Water

The geometries of glycine-nH2O （n = 1-5） complexes and the transition states of proton transfer in glycine-H2O system were calculated at the MP2/6-31＋＋G＊＊//MP2/6-31G＊ level, upon which we discovered the proton transfer mechanisms, including the number of water molecules necessary for the stabilization of zwitterions and the effect of increasing water molecules on the proton transfer. To our interest, we found that only one water molecule can stabilize the zwitterions; in addition, with the increment of water molecules, the activation energy of positive reaction decreases and that of reverse reaction increases gradually. Glycine will be ionized completely while the water molecules reach to a certain number.     

Desmotropy,Polymorphism, and Solid‐State Proton Transfer: Four Solid Forms of an Aromatic o‐Hydroxy Schiff Base

The Schiff base derived from salicylaldehyde and 2‐amino‐3‐hydroxypyridine affords a diversity of solid forms, two polymorphic pairs of the enol‐imino ( D1 a and D1 b ) and keto‐amino ( D2 a and D2 b ) desmotropes. The isolated phases, identified by IR spectroscopy, X‐ray crystallography, and ¹³C cross‐polarization/magnetic angle spinning (CP/MAS) NMR spectroscopy, display essentially planar molecular conformations characterized by strong intramolecular hydrogen bonds of the O? H???N ( D1 ) or N? H???O ( D2 ) type. A change in the position of the proton within this O???H???N system is accompanied by substantially different molecular conformations and, subsequently, by divergent supramolecular architectures. The appearance and interconversion conditions for each of the four phases have been established on the basis of a number of solution and solvent‐free experiments, and evaluated against the results of computational studies. Solid phases readily convert into the most stable form ( D1 a ) upon exposure to methanol vapor, heating, or by mechanical treatment, and these transformations are accompanied by a change in the color of the sample. The course of thermally induced transformations has been monitored in detail by means of temperature‐resolved powder X‐ray diffraction and infrared spectroscopy. Upon dissolution, all forms equilibrate immediately, as confirmed by NMR and UV/Vis spectroscopy in several solvents, with the equilibrium shifted far towards the enol tautomer. This study reveals the significance of peripheral groups in the stabilization of metastable tautomers in the solid state.     

Aligning Electronic and Protonic Energy Levels of Proton‐Coupled Electron Transfer in Water Oxidation on Aqueous TiO2

The high overpotential in water oxidation on anodes is a limiting factor for the large‐scale application of photoelectrochemical cells. To overcome this limitation, it is essential to understand the four proton‐coupled electron transfer (PCET) steps in the reaction mechanism and their implications to the overpotential. Herein, a simple scheme to compute the energies of the PCET steps in water oxidation on the aqueous TiO₂ surface using a hybrid density functional is described. An energy level diagram for fully decoupled electron‐ and proton‐transfer reactions in which both electronic and protonic levels are placed on the same potential scale is also described. The level diagram helps to visualize the electronic and protonic components of the overpotential, and points out what are needed to improve. For TiO₂, it is found that its catalytic activity is due to aligning the protonic energy levels in the PCET steps, while improving the activity requires also aligning the electronic levels.     

2,6-二巯基嘌呤质子转移异构化的密度泛函理论研究

采用密度泛函B3LYP方法, 在6-311＋G(d,p)基组水平上对2,6-二巯基嘌呤质子转移引起的硫醇式与硫酮式互变异构反应进行了计算研究, 获得了互变异构过程的反应焓、活化能、活化吉布斯自由能和质子转移反应的速率常数等性质. 计算结果表明, 2,6-二巯基嘌呤无论是孤立分子还是一水合物, 其二硫酮式R是最稳定异构体. 由二硫酮式通过分子内质子转移向二硫醇式异构化共有6条反应通道, 其主通道(1)速控步骤的活化能为139.1 kJ•mol^－1, 速率常数为2.16×10^－12 s^－1; 当水分子参与反应以双质子转移机理异构化时, 活化能显著降低, 有利于硫酮式向硫醇式转变, 其主通道(7)速控步骤的活化能为61.3 kJ•mol^－1, 速率常数为1.33×10 s^－1. 计算结果还表明, 氢键作用在增大2,6-二巯基嘌呤氢键一水合物稳定性、降低质子转移异构化反应活化能等方面起着重要的作用.     

Influence of Equatorial CH⋅⋅⋅O Interactions on Secondary Kinetic Isotope Effects for Methyl Transfer

DFT calculations for methyl cation complexed within a constrained cage of water molecules permit the controlled manipulation of the “axial” donor/acceptor distance and the “equatorial” distance to hydrogen‐bond acceptors. The kinetic isotope effect k(CH₃)/k(CT₃) for methyl transfer within a cage with a short axial distance becomes less inverse for shorter equatorial C???O distances: a decrease of 0.5 Å results in a 3 % increase at 298 K. Kinetic isotope effects in AdoMet‐dependent methyltransferases may be m∧odulated by CH???O hydrogen bonding, and factors other than axial compression may contribute, at least partially, to recently reported isotope‐effect variations for catechol‐O‐methyltransferase and its mutant structures.     

Excited‐State Proton Transfer and Intramolecular Charge Transfer in 1,3‐Diketone Molecules

The photophysical signature of the tautomeric species of the asymmetric (N,N‐dimethylanilino)‐1,3‐diketone molecule are investigated using approaches rooted in density functional theory (DFT) and time‐dependent DFT (TD‐DFT). In particular, since this molecule, in the excited state, can undergo proton transfer reactions coupled to intramolecular charge transfer events, the different radiative and nonradiative channels are investigated by making use of different density‐based indexes. The use of these tools, together with the analysis of both singlet and triplet potential energy surfaces, provide new insights into excited‐state reactivity allowing one to rationalize the experimental findings including different behavior of the molecule as a function of solvent polarity.     

Low‐Energy‐Barrier Proton Transfer Induced by Electron Attachment to the Guanine⋅⋅⋅Cytosine Base Pair

The photoelectron spectrum of the anion of the guanine ??? cytosine base apair (GC)^.? is recorded for the first time. The observed variation in the spectral peak‐height ratios with the source conditions suggests the presence of two or more anionic isomers. Two maxima of the broad bands in the photoelectron spectrum were measured at about 1.9 and about 2.6 eV. These values are very well reproduced by the vertical detachment energies of the B3LYP/6‐31++G(d,p) calculated low‐energy anionic structures, which are 1) the Watson–Crick base‐pair anion with proton transferred from N1 of guanine to N3 of cytosine, 2) its analogue in which the proton is transferred from N9 of guanine to N7 of guanine, and 3) the global minimum geometry, which is formed from the latter anion by rotation of guanine about the axis approximately defined by C2 of guanine and C4 of cytosine. Furthermore, a minor difference in the stabilities of the two lowest energy anions explains the experimentally observed source (temperature) dependence of the PES spectrum. A rational procedure, based on the chemistry involved in the formation of anionic dimers, which enables the low‐energy anions populated in the photoelectron spectrum to be identified is proposed. In contrast to the alternative combinatorial approach, which in the studied case would lead to carrying out quantum chemical calculations for 2000–2500 structures, the procedure described here reduces the computational problem to only 15 geometries.     

Control over Excited State Intramolecular Proton Transfer and Photoinduced Tautomerization: Influence of the Hydrogen‐Bond Geometry

The influence of H‐bond geometry on the dynamics of excited state intramolecular proton transfer (ESIPT) and photoinduced tautomerization in a series of phenol‐quinoline compounds is investigated. Control over the proton donor–acceptor distance (d_DA) and dihedral angle between the proton donor–acceptor subunits is achieved by introducing methylene backbone straps of increasing lengths to link the phenol and quinoline. We demonstrate that a long d_DA correlates with a higher barrier for ESIPT, while a large dihedral angle opens highly efficient deactivation channels after ESIPT, preventing the formation of the fully relaxed tautomer photoproduct.     

A Computational Study of Vicinal Fluorination in 2,3‐Difluorobutane: Implications for Conformational Control in Alkane Chains

A comprehensive conformational analysis of both 2,3‐difluorobutane diastereomers is presented based on density functional theory calculations in vacuum and in solution, as well as NMR experiments in solution. While for 1,2‐difluoroethane the fluorine gauche effect is clearly the dominant effect determining its conformation, it was found that for 2,3‐difluorobutane there is a complex interplay of several effects, which are of similar magnitude but often of opposite sign. As a result, unexpected deviations in dihedral angles, relative conformational energies and populations are observed which cannot be rationalised only by chemical intuition. Furthermore, it was found that it is important to consider the free energies of the various conformers, as these lead to qualitatively different results both in vacuum and in solvent, when compared to calculations based only on the electronic energies. In contrast to expectations, it was found that vicinal syn‐difluoride introduction in the butane and by extension, longer hydrocarbon chains, is not expected to lead to an effective stabilisation of the linear conformation. Our findings have implications for the use of the vicinal difluoride motif for conformational control.     

Void‐Assisted Ion‐Paired Proton Transfer at Water–Ionic Liquid Interfaces

At the water–trihexyl(tetradecyl)phosphonium tris(pentafluoroethyl)trifluorophosphate ([P_14,6,6,6][FAP]) ionic liquid interface, the unusual electrochemical transfer behavior of protons (H⁺) and deuterium ions (D⁺) was identified. Alkali metal cations (such as Li⁺, Na⁺, K⁺) did not undergo this transfer. H⁺/D⁺ transfers were assisted by the hydrophobic counter anion of the ionic liquid, [FAP]^?, resulting in the formation of a mixed capacitive layer from the filling of the latent voids within the anisotropic ionic liquid structure. This phenomenon could impact areas such as proton‐coupled electron transfers, fuel cells, and hydrogen storage where ionic liquids are used as aprotic solvents.     

A Hybrid statistical mechanics—quantum chemical model for proton transfer in 5‐azauracil and 6‐azauracil in water solution

A hybrid statistical physics—quantum‐chemical methodology was implemented to study the water‐assisted intramolecular proton‐transfer processes in 5‐ and 6‐azauracils in aqueous solutions. The solvent effects were included in the model by explicit inclusion of two pairs of water molecules, which model the relevant part of the first hydration shell around the solute. The position of these water molecules was initially estimated by carrying out a classical Metropolis of dilute water solutions of the title compounds and subsequently analyzing solute–solvent intermolecular interactions in the Monte Carlo‐generated configurations. Sequentially to the statistical physics simulation, ab initio quantum mechanical (QM) level of theory was implemented. The effects of the water as solvent (at ab initio QM level) were introduced at two different levels—using solute–solvent clusters (four‐water molecules) and using the same clusters embedded in an external continuum. Full geometry optimizations of these complexes were carried out at MP2/6–31 + G(d, p) and conductor‐polarizable continuum model (C‐PCM)/MP2/6–31 + G(d, p). Single point calculations were performed at CCSD(T)/6–31 + G(d, p)//MP2/6–31 + G(d, p) computational level to obtain more accurate energies. According to our calculations hydrated azauracils should exist in three forms: mainly dioxo form and two hydroxy forms. The calculated proton transfer activation energies for tautomeric reactions of 5‐azauracil and 6‐azauracil show different pictures for these two compounds. According to C‐PCM/MP2/6–31 +G(d, p) data, water‐assisted proton transfer in 5‐azauracil realizes through two parallel reactions: 1,3,5‐triazine‐2,4(1H,3H)‐dione → 6‐hydroxy‐1,3,5‐triazin‐2(1H)‐one and 1,3,5‐triazine‐2,4(1H,3H)‐dione → 4‐hydroxy‐1,3,5‐triazin‐2(1H)‐one. Tautomeric equilibrium in 6‐azauracil in water could occur by two contiguous reactions: 1,2,4‐triazine‐3,5(2H,4H)‐dione → 5‐hydroxy‐1,2,4‐triazin‐3(2H)‐one and 5‐hydroxy‐1,2,4‐triazin‐3(2H)‐one → 3‐hydroxy‐1,2,4‐triazin‐5(2H)‐one. The proton transfer investigated reactions in 5‐ and 6‐azauracils involve concerted atomic movement. © 2015 Wiley Periodicals, Inc.     

2，4-二硫基胸腺嘧啶的异构化和质子迁移的理论研究

采用密度泛函方法在B3LYP/6-31+G水平上研究了2，4-二硫基胸腺嘧啶孤立分 子和水合物的异构体的相对稳定性和可能的质子迁移反应，分析了水分子的参与对 2，4-二硫基胸腺嘧啶异构体的相对稳定性和质子迁移速率的影响。结果表 明，该分子在气相中只存在一种稳定构型，水分子的参与未改变2，4-二硫基胸腺 嘧啶各异构体的稳定性顺序，但大大降低了质子迁过程的活化能垒。     

Excited State Intramolecular Proton Transfer in Ethynyl‐Extended Regioisomers of 2‐(2′‐Hydroxyphenyl)benzothiazole: Effects of the Position and Electronic Nature of Substituent Groups

Although the organic dyes based on excited state intramolecular proton transfer (ESIPT) mechanism have attracted significant attention, the structure‐property relationship of ESIPT dyes needs to be further exploited. In this paper, three series of ethynyl‐extended regioisomers of 2‐(2′‐hydroxyphenyl)benzothiazole (HBT), at the 3′‐, 4′‐ and 6‐positions, respectively, have been synthesized. Changes in the absorption and emission spectra were correlated with the position and electronic nature of the substituent groups. Although 4′‐ and 6‐substituted HBT derivatives exhibited absorption bands at longer wavelengths, the keto‐emission of 3′‐substituted HBT derivatives was found at a substantially longer wavelength. The gradual red‐shifted fluorescence emission was found for 3′‐substituted HBT derivatives where the electron‐donating nature of substituent group increased, which was opposite to what was observed for 4′‐ and 6‐substituted HBT derivatives. The results derived from the theoretical calculations were in conformity with the experimental observations. Our study could potentially provide experimental and theoretical basis for designing novel ESIPT dyes that possess unique fluorescent properties.     

The Quest of Excited‐State Intramolecular Proton Transfer via Eight‐Membered Ring π‐Conjugated Hydrogen Bonding System

Searching for eight‐membered ring π‐conjugated hydrogen bonding (8‐MR H‐bonding) systems with excited‐state intramolecular proton transfer (ESIPT) property is seminal and synthetically challenging. In this work, a series of π‐conjugated molecules ( 8‐HB‐1 , 8‐HB‐L1 and 8‐HB‐2 ) potentially possessing 8‐MR H‐bonding are strategically designed, synthesized and characterized. The configurations of these three potential molecules are checked by their X‐ray structures, among which 8‐HB‐L1 (a structurally locked 8‐HB‐1 core chromophore) is proved to be an 8‐MR H‐bonding system, whereas 8‐HB‐1 and 8‐HB‐2 are too sterically hindered to form the 8‐MR intramolecular H‐bond. The ESIPT property of 8‐HB‐L1 is confirmed by the dual fluorescence consisting of normal and proton‐transfer tautomer emissions. The insight into the ESIPT process of 8‐HB‐L1 is provided by femtosecond fluorescence upconversion measurements together with computational simulation. The results demonstrate for the first time a successful synthetic route to attain the 8‐MR H‐bonding molecule 8‐HB‐L1 with ESIPT property.     

Three Modes of Proton Transfer in One Chromophore: Photoinduced Tautomerization in 2‐(1H‐Pyrazol‐5‐yl)Pyridines,Their Dimers and Alcohol Complexes

Studies of 2‐(1H‐pyrazol‐5‐yl)pyridine (PPP) and its derivatives 2‐(4‐methyl‐1H‐pyrazol‐5‐yl)pyridine (MPP) and 2‐(3‐bromo‐1H‐pyrazol‐5‐yl)pyridine (BPP) by stationary and time‐resolved UV/Vis spectroscopic methods, and quantum chemical computations show that this class of compounds provides a rare example of molecules that exhibit three types of photoreactions: 1) excited‐state intramolecular proton transfer (ESIPT) in the syn form of MPP, 2) excited‐state intermolecular double‐proton transfer (ESDPT) in the dimers of PPP in nonpolar media, as well as 3) solvent‐assisted double‐proton transfer in hydrogen‐bonded 1:1 complexes of PPP and MPP with alcoholic partners. The excited‐state processes are manifested by the appearance of a dual luminescence and a bimodal irreversible kinetic coupling of the two fluorescence bands. Ground‐state syn–anti equilibria are detected and discussed. The fraction of the higher‐energy anti form varies for different derivatives and is strongly dependent on the solvent polarity and hydrogen‐bond donor or acceptor abilities.