Synthesis of l-α-phosphatidyl-d-myo-inositol 3,5-bisphosphate from d-glucose

Efficient synthesis of l-α-phosphatidyl-d-myo-inositol 3,5-bisphosphate was achieved from 1,2,5,6-diisopropylidene-d-glucose by utilizing ring-closing metathesis and catalytic OsO₄ dihydroxylation.     

Fragmentation of deprotonated d-ribose and d-fructose in MALDI—Comparison with dissociative electron attachment

We present a detailed, collaborative study on the fragmentation of deprotonated native d-ribose and d-fructose and the isotopically labelled 1-¹³C-d-ribose, 5-¹³C-d-ribose and C-1-d-d-ribose. The fragmentation is studied in a matrix assisted laser desorption/ionization time of flight mass spectrometer (MALDI ToF MS), both in in-source decay (ISD) and post-source decay (PSD) mode and compared with fragmentation through dissociative electron attachment (DEA). Fragmentation of deprotonated monosaccharides formed in the MALDI process, as well as their transient molecular anions formed upon electron attachment are characterized by loss of different numbers of H₂O and CH₂O units. Two different fragmentation pathways leading to cross-ring cleavage are identified. Metastable decay of deprotonated d-ribose proceeds either via an X-type cleavage yielding fragment anions at m/z = 119, 100 and 89, or via an A-type cleavage resulting in m/z = 89, 77 and 71. A fast and early metastable cross-ring cleavage of deprotonated d-ribose observed in in-source decay is dominated by X-type cleavage leading mainly to m/z = 100 and 71. For dissociative electron attachment to d-ribose a sequential dissociation was identified that includes metastable decay of the dehydrogenated molecular anion leading to m/z = 89. All other fragmentation reactions in DEA to d-ribose are likely to proceed directly and on a faster timescale (below 400 ns).     

Asymmetric syntheses of the methyl glycosides of 2-deoxy-2-aminohexoses: d-allosamine, d-mannosamine, d-idosamine and d-talosamine

A range of the methyl glycosides of 2-deoxy-2-aminohexoses, comprising d-allosamine, d-mannosamine, d-idosamine and d-talosamine, were prepared from the corresponding d-aldopentoses via a seven step synthetic sequence. The doubly diastereoselective conjugate addition of the requisite antipode of lithium N-benzyl-N-(α-methylbenzyl)amide and in situ enolate oxidation with the requisite antipode of camphorsulfonyloxaziridine (CSO) was used as the key, stereodefining step. Sequential reduction of the resultant α-hydroxy-β-amino esters and oxidative cleavage of the C(1)–C(2) diol unit furnished the corresponding α-amino aldehydes. Subsequent N- and O-deprotection gave the target compounds (as mixtures of anomers) in good yield and high diastereoisomeric purity.     

Building carbohydrates on the dioxanone scaffold: stereoselective synthesis of d-glycero-d-manno-2-octulose

The title compound has been synthesized via two proline-catalyzed aldol addition reactions of 2,2-dialkyl-1,3-dioxan-5-ones: the first addition to 1,3-dithiane-2-carboxaldehyde, followed by reduction to the corresponding diol, protection of the OH groups and dithiane hydrolysis afforded a protected d-ribose that was used in the second aldol addition reaction.     

Transport characterisation of a PIM system used for the extraction of Pb(II) using d2ehpa as carrier

The facilitated transport of lead(II) through polymeric inclusion membranes consisting of cellulose triacetate as polymeric support, bis-(2-ethylhexyl)-phosphoric acid (d2ehpa) as carrier, and tris-(2-butoxyethyl)phosphate as plasticiser (tbep), is investigated. The influence of some of the aqueous and membrane components on the permeability of Pb(II) was studied. The maximum flux obtained with these membranes is 3.5×10⁻⁶ mol m⁻² s⁻¹, which is of the same order of magnitude of those reported for supported liquid membranes and is in the upper range of those reported for polymeric inclusion membranes. Aqueous and membranes resistances were determined from a model that describes the transport mechanism across the membranes using the stoichiometric relationship and the extraction equilibrium constant value of 6.2×10⁻⁴ determined independently by solid–liquid extraction. An activation energy of 11 kJ mol⁻¹ was also determined for Pb(II) migration, which suggest that the transport of Pb(II) is controlled by a membrane diffusion mechanism. Membrane characterisation was performed using several techniques including atomic force microscopy, scanning electron microscopy coupled with energy-dispersive spectroscopy, and thermal analysis.     

Benzamidinium d-glucuronate: Spectroscopic and structural elucidation

Benzamidinium d-glucuronate (1) crystallizes in the orthorhombic space group P2₁2₁2₁ and exhibits a 3 D network with molecules linked by moderate intermolecular hydrogen bonds (HNH…O_(solvent) 2.993 Å, HNH…OCO 2.894 Å, HNH…O_(cycle) 2.844 Å, OH…NH₂ 2.931 Å, OH…O_(solvent) 2.894, 2.924 and 2.715 Å (stronger)) with participation of cations, anions and solvent molecules. The IR-band assignment of carbohydrate moieties is elucidated by a comparison between the types and bond lengths of intermolecular interactions with participation of OH groups in d-glucuronate and linear polarized IR-(IR-LD) spectroscopic data. Experimental results are supported by theoretical ab initio calculations of benzamidinium cation and d-glucuronate anion.     

New entry to pyrrolidine homoazasugars: conversion of d-arabinose into 2,5-anhydro-2,5-imino-d-glucitol via aminohomologation

The title homoazasugar, also referred as (2R,5S)-bis(hydroxymethyl)-(3R,4R)-dihydroxypyrrolidine, has been synthesized by addition of 2-lithiothiazole to the 2,3,5-tri-O-benzyl-d-arabinofuranose-derived nitrone---hydroxylamine mixture followed by reductive N-dehydroxylation and conversion of the thiazole ring into the hydroxymethyl group.     

Syntheses and structural comparisons of two copper(II) complexes with the same formula having d-(+)- and d,l-1,2,2-trimethylcyclopentane-1,3-diamine ligands

Two five-coordinate copper(II) complexes, formulated as [Cu(L_a)₂Cl]BF₄ (1) and [Cu(L_b)₂Cl]BF₄ (2) having d-(+)-1,2,2-trimethylcyclopentane-1,3-diamine (L_a) and d,l-1,2,2-trimethylcyclopentane-1,3-diamine (L_b) ligands, have been synthesized and characterized. X-ray diffraction studies of 1 and 2 demonstrate that they crystallize in the different space groups (P2₁2₁2₁ for 1 and Pnma for 2), although they have identical unit cell volumes, due to the use of enantiomeric and racemic diamine ligands. One dimensional (1D) hydrogen-bond-sustained dimeric zigzag chains are formed by means of eight-membered N₂H₂CuBF₂ as well as 10-membered N₂H₄ClBF₂ hydrogen-bonded cycles. Thermal analyses for 1 and 2 are also described herein.     

Stereoselective total synthesis of ophiocerin D from d-xylose

A stereoselective total synthesis of ophiocerin D is reported by a combination of a ‘chiron’ approach and an asymmetric synthesis, from d-xylose. Of the four stereogenic centers, the vic diols C3/C4 and C5/C6 were obtained by Sharpless asymmetric dihydroxylation and from d-xylose, respectively.     

Electro-oxidation of d-mannose on platinum, gold and nickel electrodes in aqueous medium

The oxidation of d-mannose is studied on platinum, gold and nickel in alkaline medium. The electro-reactivity of this compound and the rate determining step of the reactions were determined by cyclic voltammetry. Lead adatoms have important effect on the oxidation of d-mannose on platinum electrode. Five folder of increase in current densities was observed after the addition of 10⁻⁶ M Pb²⁺. Electrolyses carried out on upd-lead modified platinum, and gold electrodes show good conversion yields (75% and 80%, respectively) and reasonable selectivities towards mannonic acid. High amount of cleavage products were detected at the end of the electrolysis at nickel electrode. The reactivity-functional group relationship has been discussed considering the results of the electrolyses.     

Cyclic oligomers (macroaldonolactones) from a protected d-galactonic acid monomer

Dicyclohexylcarbodiimide-promoted self-condensation of 2,3:4,5-di-O-isopropylidene-d-galactonic acid (3) led to the macrocyclic oligomeric cyclo[(2,3:4,5-di-O-isopropylidene-(1→6)-d-galactonate)₂] (4) and cyclo[(2,3:4,5-di-O-isopropylidene-(1→6)-d-galactonate)₃] (5), having, respectively, 14- and 21-membered rings. The macrocycles 4 and 5 were also synthesized by cyclization of the respective linear dimer 11 and trimer 14 ω-hydroxy acids precursors prepared by stepwise additions of 3. Compounds 4 and 5 are biomaterials that may be described as macrolactone-cyclodextrins.     

Practical synthesis of 1-deoxy-d-xylulose and 1-deoxy-d-xylulose 5-phosphate allowing deuterium labelling

An optimised gram scale synthesis allows the production of 1-deoxy-d-xylulose and 1-deoxy-d-xylulose 5-phosphate with possible deuterium labelling at C-5. Such substrates are required for investigations on the mevalonate-independent 2-C-methyl-d-erythritol 4-phosphate pathway for isoprenoid biosynthesis in bacteria and chloroplasts of phototrophic eukaryotes and for the biosynthesis of vitamins B₁ (thiamine diphosphate) and B₆ (pyridoxol phosphate) in bacteria.     

Tetrahydrofuran-mediated radical processes: stereoselective synthesis of d,l-hexestrol

The highly stereoselective synthesis of d,l-hexestrol (1), an inhibitor of microtubule assembly, is developed by using, as a key step, an intermolecular coupling of Co₂(CO)₆-complexed propargyl radicals. The latter are generated by novel complementary processes involving an interaction of tetrahydrofuran with Co₂(CO)₆-complexed propargyl alcohols and cations. An isomerically pure d,l-μ-η²-[3,4-di(4-methoxyphenyl)-1,5-hexadiyne]-bis-dicobalthexacarbonyl (d,l-6) is isolated in 69-91% yield with intermolecular coupling reactions exhibiting an excellent chemo- (0.5-7%) and d,l-diastereoselectivity (90-94%). The structure of d,l-6 is determined by X-ray diffraction. The subsequent steps include BBr₃-induced demethylation of 4-methoxyaryl groups, demetalation with cerium(IV) ammonium nitrate, and hydrogenation of acetylenic termini affording d,l-hexestrol (1).     

From d-xylose to a d-glycero-l-altrose derivative

A key intermediate corresponding to a rare sugar framework has been synthesized, starting from d-xylose, an inexpensive carbohydrate. This approach gave access to new elaborated sugar moieties for structure–activity relationships in the KRN research.     

Boiling point of aqueous d-glucose and d-fructose solutions: Experimental determination and modeling with group-contribution method

Boiling points of aqueous solutions affect the design and operation of evaporators. Hence, boiling points of aqueous solutions of d-glucose and d-fructose were experimentally determined at soluble solute concentration from 10 to 60% sugar by mass and pressure from 20 to 93.6 kPa. The experimental data were correlated with data predicted by the calculation of the activity coefficients with the UNIFAC-Lyngby model using different approaches for decomposition of the molecular structure: the aliphatic groups and the cyclic groups. Moreover, the rise in experimental boiling point of the aqueous sugar solutions was evaluated by the Dühring's rule. It was observed that the cyclic approach resulted in better accuracy for liquid–vapor equilibrium prediction and the non-ideality of these solutions are relevant in the boiling point rise, confirming that the rise in boiling point of aqueous d-glucose and d-fructose concentrated solutions is significant to the design of heat and mass transport operations.     

Stereo-controlled approach to pyrrolidine iminosugar C-glycosides and 1,4-dideoxy-1,4-imino-l-allitol using a d-mannose-derived cyclic nitrone

Intramolecular N-alkylation of 2,3-O-isopropylidene-5-O-methanesulfonyl-6-O-t-butyldimethylsilyl-d-mannofuranose-oxime 7 afforded a five-membered cyclic nitrone 9, which on N–O bond reductive cleavage followed by deprotection of –OTBS and acetonide functionalities gave 1,4-dideoxy-1,4-imino-l-allitol (DIA) 3. Addition of allylmagnesium chloride to nitrone 9 afforded α-allylated product 10a in high diastereoselectivity providing an easy entry to N-hydroxy-C1-α-allyl-substituted pyrrolidine iminosugar 4a after removal of protecting group, while N–O bond reductive cleavage in 10a afforded C1-α-allyl-pyrrolidine iminosugar 4b.     

New phosphine-imine and phosphine-amine ligands derived from d-gluco-, d-galacto- and d-allosamine in Pd-catalysed asymmetric allylic alkylation

New phosphine-imine and phosphine-amine chiral ligands which were easily prepared from d-gluco-, d-galacto- and d-allosamine furnished a high level of enantiomeric excess (up to 99%) in the Pd(0)-catalysed asymmetric allylic alkylation of racemic 1,3-diphenyl-2-propenyl acetate with malonates.     

EPR and optical absorption studies of Cr ions in d-gluconic acid monohydrate

EPR studies are carried out on Cr³⁺ ions doped in d-gluconic acid monohydrate (C₆H₁₂O₇·H₂O) single crystals at 77 K. From the observed EPR spectra, the spin Hamiltonian parameters g, |D| and |E| are measured to be 1.9919, 349 (×10⁻⁴) cm⁻¹ and 113 (×10⁻⁴) cm⁻¹, respectively. The optical absorption of the crystal is also studied at room temperature. From the observed band positions, the cubic crystal field splitting parameter Dq (2052 cm⁻¹) and the Racah interelectronic repulsion parameter B (653 cm⁻¹) are evaluated. From the correlation of EPR and optical data the nature of bonding of Cr³⁺ ion with its ligands is discussed.     

Stereoselective synthesis of 3-glycosyl-5-methoxycarbonyl-isoxazolidines from d-galactose and d-glucose

Regio- and stereoselective cycloaddition of methyl acrylate to C-glycosyl nitrones derived from d-galactose and d-glucose, giving 5-methoxycarbonyl-3-(pentoglycos-5-yl or pentitol-1-yl)isoxazolidines, is reported. Transformation of one of them into a 4-hydroxy-2-(pentoglycos-5-yl)pyrrolidine derivative, potentially useful in a route to polyhydroxy-perhydroazaazulenes, was achieved.     

Selection of synthetic receptors capable of sensing the difference in binding of d-Ala-d-Ala or d-Ala-d-Lac ligands by screening of a combinatorial CTV-based library

Screening of a combinatorial CTV-based artificial, synthetic receptor library 1 {1-13, 1-13, 1-13} for binding of a variety d-Ala-d-Ala and d-Ala-d-Lac containing ligands (6-11) was carried out in phosphate buffer (0.1 N, pH=7.0). After screening and Edman sequencing, synthetic receptors were found containing amino acid sequences, which are either characteristic for binding dye labeled d-Ala-d-Ala or d-Ala-d-Lac containing ligands. For example, receptors capable of binding d-Ala-d-Ala containing ligands 6, 7, 9 and 11 contained—almost in all cases—at least one basic amino acid residue—predominantly Lys—in their arms. This was really a striking difference with the arms of the receptors capable of binding d-Ala-d-Lac containing ligands 8 and 10, which usually contained a significant number of polar amino acids (Gln and Ser), especially in ligand 8, but hardly any basic amino acids. Use of different (fluorescent) dye labels showed that the label has a profound, albeit not decisive, influence on the binding by the receptor. A hit from the screening of the CTV-library with FITC-peptidoglycan (6) was selected for resynthesis and validation.