Crystal structures of bile salts: Sodium taurocholate

Crystals of sodium taurocholate (NaC₂₆H₄₄NO₇S · 2.5 H₂O) belonging to the triclinic space groupP1 have unit cell parametersa = 12.731 (2),b = 16.104 (2),c = 7.628 (1) A, =83.40 (1), = 101.20 (1), = 105.35 (1)°, and two molecules in the asymmetric unit. The refinement, carried out on 4424 observed reflections, gaveR = 0.059 andR _w = 0.066. The packing is characterized by bilayers, formed by antiparallel monolayers and with nonpolar outermost surfaces, held together by van der Waals interactions. Inside the bilayers there are channels, lined with polar groups, and filled by sodium ions and water molecules. A structural unit has been identified that could provide a reasonable model for the micellar aggregates of this bile salt. Supplementary Data relevant to this article have been deposited with the British Library under the reference number SUP 82125 (38 pages).     

Solid state structure of the hydrated potassium thiocyanate complex of benzodinaphthopyridino 21-crown-7, C37H31NO6·KSCN·H2O (1 : 1 : 1)

Single crystal X-ray analysis of the hydrated KSCN complex of benzodinaphthopyridino-21-crown-7 (1) (1 : 1 : 1) is reported. Crystals of the complex are orthorhombic,Pnma, with = 16.946(4),b = 22.298(4),c = 10.390(8) Å andD _c = 1.184 g cm^–1,Z = 4. The host macroring (1) has a mirror symmetry and exists in a so-called dentists chair conformation. The cation (K^–) is coordinated to all the six ether oxygen atoms and also weakly to the pyridine N atom. The SCN^– anion group has a statistical type of disorder with opposite orientations of S and N such that nitrogen and sulphur are coordinated to K⁺. Packing of the host molecules is in columns to form quasi channels with K⁺, SCN^–, and H₂O being located inside the stacks. Supplementary Data relating to this article are deposited with the British Library as Supplementary Publication No. SUP 82132 (9 pages).     

Crystal structures of ethylenediaminecadmium(II) tetracyanocadmate(II)-benzene(1/2) and ethylenediaminecadmium(II) tetracyanocadmate(II)

The crystal structure of ethylenediaminecadmium(II) tetracyanocadmate(II)-benzene(1/2),I, has been redetermined based on 1632 reflections collected anew for the crystal coated with epoxy resin, with a final conventionalR=0.038;I crystallizes in space groupP4₂22, witha=b=8.265(1) andc=15.512(3) Å, andZ=2. Ethylenediaminecadmium(II) tetracyanocadmate(II),II, is concluded to be identical with the residual metal complex host ofI, remaining after the liberation of the guest benzene molecules;II crystallizes from an aqueous solution containing bis- or tris-ethylenediaminecadmium(II) tetracyanocadmate(II) in space groupI4₁/acd, witha=b=14.366(1) andc=23.771(4) Å, andZ=16; refinement led to a conventionalR=0.043 for 1181 reflections. The bridging ethylenediamine ligand inI turns to a chelating one inII; dissociation and recombination should occur in the coordination sphere of the six-coordinate cadmium atom, whenII is derived fromI by the liberation of the guest molecules. Supplementary Data relating to this article are deposited with the British Library as Supplementary Publication No. SUP 82018 (30 pages).Dedicated to Professor H. M. Powell.     

Crystal structure of a non-stoichiometric channel inclusion complex of 1-benzyl-6-phenylpiperidin-2-one-5-carboxylic acid with acetonitrile

C₁₉H₁₉NO₃·x CH₃CN (x=0.3),M _r=643.35, hexagonal, space groupP6₁ (No. 169),a=23.027(5),c=5.775(1) Å,V=2652(1) ų,Z=6. The structure was solved by direct methods and refined toR=0.077 for 1562 observed MoK reflections. The title heterocyclic carboxylic acid was established as thetrans isomer, with the phenyl and carboxyl substituents occupying pseudo-equatorial and equatorial positions, respectively, of the piperidin-2-one ring in a half-chair conformation. Acid host molecules related by the 6₁ screw operation are linked by intermolecular O–H...O (cyclic amide) hydrogen bonds to generate an open channel bounded by coaxial intertwined helices each having a pitch of 5c. Within each channel of free diameterca. 6.0 Å the acetonitrile molecules partially occupy highly disordered sites which do not lie on thec axis. Supplementary Data relating to this article are deposited with the British Library as Supplementary Publication No. SUP 82067 (13 pages).     

Studies in werner clathrates. Part 2. Structures of bis (isothiocyanato) tetra (4-phenylpyridine) nickel (II)· 4-dimethylsulphoxide,bis (isothiocyanato) tetra (3-methylpyridine) nickel (II)· chloroform and bis (isothiocyanato) tetra (3,5-dimethylpyridine) nickel (II)

The structures of Ni(NCS)₂(4-PhPy)₄·4DMSO and Ni(NCS)₂(3-MePy)₄·CHCl₃ have been elucidated. Movement of guest molecules through channels in the host structure was simulated by potential energy calculations. Ni(NCS)₂(3,5-diMePy)₄ does not form inclusion compounds. An intra-molecular potential energy study shows that theortho-hydrogens on the 3,5-dimethylpyridine ligands control the conformation of the molecule. The same result is obtained with the 4-methylpyridine ligand, which suggests that the extent of rotation of substituted pyridines about the Ni–N bounds is not a factor governing clathrate formation. Supplementary Data relating to this article are deposited with the British Library as Supplementary Publication No. SUP 82030 (43 pages).     

Twelve-membered crown ethers: Crystal structures of benzo-12-crown-4 and naphtho-12-crown-4

The crystal structures of two 12-membered crown ethers, benzo-12-crown-4 (1) and naphtho-12-crown-4 (2), have been determined by X-ray analysis. Both structures are molecular. Compound1 is monoclonic,P2₁/b,a=8.466(3),b=8.019(3),c=33.590(10) Å, =90.99(3)^o. The unit cell contains two crystallographically independent molecules of1 with similar conformations. Compound2 is also monoclinic,P2₁/a,a=24.148(8),b=14.535(4),c=7.987(5) Å, =102.87(2)^o. Two independent molecules in the unit cell have significantly different conformations. Supplementary data relating to this publication have been deposited with the British Library as Supplementary Publication No. SUP 82145 (19 pages).     

Tetraphenylene molecular inclusion complexes. Crystal structures of 2(tetraphenylene)·X,with X=benzene cyclohexane

The crystal structures of two compounds belonging to the isomorphous series of clathrate inclusion complexes of tetraphenylene, 2C₂₄H₁₆·X (with X=benzene (I) and X-cyclohexane (II), were solved. For (I),a=10.0691(1),c=18.431(5) Å, space groupP4₂/n,Z=2; (II) has a very similar cell.Crystal structure analyses (Nicolet R3m four-circle diffractometer, graphite-monochromated MoK; (I) 926 reflections,R _F =12.8%; (II) 1180 reflections,R _F =10%) showed that the tetraphenylene molecules use crystallographicC ₂ symmetry in the construction of a nearly spherical cavity of point symmetry 4 located about 1/4 1/4 1/4. The geometry of the tetraphenylene molecule agrees well with that reported earlier for the crystals of neat tetraphenylene. The enclosed benzene and cyclohexane guests are necessarily disordered. Thedisorder found for the cyclohexane guest is consistent with its expectedchair conformation. Analysis of the cell dimensions of a number of complexes shows that the tetraphenylene framework adjusts itself according to the steric requirements of the guests. Supplementary Data relating to this article are deposited with the British Library as Supplementary Publication No. SUP 82003. To obtain copies, see page ii of this issue.Also known as N. Z. Huang.     

Urea-water-anion Lattices Part 1. Crystal structures of (C2H5)4N+X−·(NH2)2CO·2 H2O (X=Cl,Br, CN), an isomorphous series of layer-type inclusion complexes

The title ternary complexes (1, X=Cl;2, X=Br;3, X=CN) have been prepared and characterized by X-ray crystallography. Crystal data: space groupP2₁/n,Z=4;1,a=7.505(2),b=14.556(4),c=14.453(3) Å, =98.13(2)^o, andR _F=0.088 for 1831 observed MoK data;2,a=7.483(1),b=14.643(6),c=14.443 Å, =98.25(2)^o, andR _F=0.113 for 923 data;3,a=7.490(2),b=14.646(5),c=14.594(5) Å, =98.85(5)^o, andR _F=0.082 for 915 data. In the isomorphous crystal structure of1 and2, ordered (C₂H₅)₄N⁺ cations are sandwiched between puckered layers matching the (020) family of planes, each being constructed from the cross-linking of planar zigzag chains of hydrogen-bonded urea molecules by the water molecules and halide ions. Compound3 has the same structure except that its cyanide group is disordered. Supplementary Data relating to this article are deposited with the British Library as Supplementary Publication No. SUP 82066 (30 pages).Operated under contract DE-AC02-76CH00016 with the U.S. Department of Energy, Office of Basic Energy Science.     

Dansyl-Modified γ-Cyclodextrin as a fluorescent sensor for molecular recognition

The crystal structure of thiamine iodide sesquihydrate has been determined by X-ray diffraction methods as a host-guest model for coenzyme-substrate interactions. The asymmetric unit contains two chemical units. Both the thiamine molecules A and B, which are crystallographically independent, assume the usualF conformation and have a disordered hydroxyethyl side chain. An iodide anion (or a water molecule) bridges the pyrimidine and thiazolium rings of molecule A (or B) by forming a hydrogen bond with the amino group and an electrostatic contact with the thiazolium ring to stabilize the molecular conformation. In the crystal the thiamine molecules self-associate to form a pipe-like polymeric structure, in which four thiamine hosts surround an iodide guest and hold it through C(2)-H...I hydrogen bonds and thiazolium...I electrostatic interactions. Crystal data: C₁₂H₁₇N₄OS⁺·I^– · 1.5 H₂O, monoclinic,P2₁/c, a=12.585(2), b=25.303(5), c=12.030(2) Å, =115.15(1)°,V=3468(1) ų,Z=8,D _c=1.606 g cm^–3,R=0.045 for 3328 observed reflections. Supplementary Data relating to this article are deposited with the British Library as Supplementary Publication No. SUP. 82156 (13 pages).     

Crystalline inclusion compounds of tetrabenzo-18-crown-6 with uncharged organic molecules. Solid-state structure of the nitroethane complex

Tetrabenzo-18-crown-6 (1) shows distinct solid-state inclusion properties towards a number of OH-acidic, CH-acidic and low-polar uncharged organic molecules. The single crystal X-ray analysis of the inclusion complex between1 and EtNO₂ (11) is reported. Crystals are monoclinic,P2₁/c, witha=12.887(1),b=19.365(2),c=10.776(1) Å, =96.33(2)^o,D _c=1.321g cm^–1,Z=4. The host macroring has a conformation similar to a dentist's-chair. The complex is stabilized mainly by C–H...O type interactions involving the methyl group of the EtNO₂ guest molecule which is highly disordered. The nitroethane guests are trapped in channels formed by the host macrocycles. Supplementary Data relating to this article are deposited with the British Library as Supplementary Publication No. SUP 82150 (11 pages)     

Synthesis and structure of tin tetrachloride adducts with crown ether: Crystal structure of [Sn(H2O)2Cl4] · 18C6 and [Sn(H2O)2Cl4] · 18C6 · 2H2O

Tin coordination compounds [Sn(H₂O)₂Cl₄] · 18C6 (I) and [Sn(H₂O)₂Cl₄] · 18C6 · 2H₂O (II) were synthesized and identified by IR spectroscopy, CH analysis, and X-ray powder diffraction. The crystal structures of compounds I and II were determined. The crystals of I and II are orthorhombic; a = 16.871(1) ?, b = 7.7305(7) ?, c = 16.939(1) ?, Z = 4, space group Cmca for I; a = 14.206(2) ?, b = 20.376(3) ?, c = 8.319(1) A, Z = 4, space group Pna21 for II. The structural units of I and II are [Sn(H₂O)₂Cl₄] · 18C6 complex molecules (in II, also water molecules of crystallization). The coordinated water molecules in I are trans and those in II are cis to each other. The structural units in the crystals of I and II are combined only by hydrogen bonds between water molecules and the crown-ether oxygen atoms with the formation of the chain structure. Complex I was tested as the precursor of tin dioxide in a chemical vapor deposition (CVD) process. The morphology of the obtained film was studied by atomic force microscopy (AFM) and scanning electron microscopy (SEM), and the composition was studied by laser mass spectrometry for elemental analysis.     

THE CRYSTAL STRUCTURES OF AMMONIUM AND SODIUM 2-AMINO-3,5-DICHLOROBENZOATES

Abstract

The crystal structures of ammonium and sodium 2-amino-3,5-dichlorobenzoates were determined by the X-ray diffraction method. The ammonium salt crystallizes in the monoclinic system (space group P2₁/c) with a = 13.941(3), b = 9.128(3), c = 7.349(2) Å, β = 90.80(3)° and Z = 4. The structure consists of an ammonium cation hydrogen bonded to a carboxylate oxygen of the 2-amino-3,5-dichlorobenzoate anion. The sodium salt of 2-amino-3,5-dichlorobenzoic acid crystallizes in the triclinic system (space group P 1) with a = 8.033(2), 6 = 8.944(2), c = 17.350(3) Å, α = 76.72(3)°, β = 79.69(3)°, γ = 72.54(3)° and Z = 4. The compound is a polymer in which the sodium ions are coordinated by carboxylate oxygen atoms of the organic ligand and water molecules in an octahedral arrangement. IR spectra of the salts are discussed.     

Inclusion complexes of the natural product gossypol. Recognition by gossypol of halogeno methanes. Structure of the dichloromethane complex of gossypol and single crystal conservation after decomposition

The structures of gossypol complexes are extremely sensitive to the halogenomethane present as the guest; e.g. changing the number of Cl atoms in chloromethane derivatives changes the structure of the gossypol complex. The crystals of C₃₀H₃₀O₈·CH₂Cl₂ are monoclinic, space groupC2/c,a=21.320(4),b=19.199(6),c=15.765(2)Å, =113.05(2)^o,V=5916(2)ų,Z=8,D _x=1.35 g/cm³,T=295 K. The structure has been solved by direct methods and refined to the finalR value of 0.084 for 1828 reflections. In the structure H-bonded gossypol molecules form columns, generating channels in the structure which are filled by guest molecules. After decomposition (desolvation) monocrystals of the complexes are conserved without destruction, in which there are rather wide and empty channels though slightly smaller than in the complex. An attempt is made to explain some peculiarities of the behavior of the gossypol polymorph formed on the basis of its structure with empty channels. Supplementary data relevant to this article have been deposited with the British Library Publication No. SUP 82165 (17 pages).     

Syntheses,crystal structures and thermoanalyses of alkaline earth metal complexes derived from dinitropyridone

Six new alkaline-earth metal compounds derived from dinitropyridone ligands (3,5-dinitropyrid-2-one, 2HDNP; 3,5-dinitropyrid-4-one, 4HDNP and 3,5-dinitropyrid-4-one-N-hydroxide, 4HDNPO) were synthesized and characterized by elemental analysis, FT-IR and partly by powder XRD, TG-DSC and X-ray single-crystal diffraction analysis. The structural determination revealed that one molecule of both magnesium salts (Mg(2DNP)₂ ·?8H₂O, (1), and Mg(4DNP)₂ ·?6H₂O (4)) comprise one cation [Mg(H₂O)₆]²⁺ and two anions displaying centro-symmetry with the Mg atom located at the center. Two anions (and crystalline water molecules) are joined by hydrogen bonds. The barium salt Ba(4DNP)₂ ·?4H₂O (5), is a centro-symmetric dimer with each Ba(II) being coordinated by one monodentate ligand anion, two bidentate ligand anions (different coordination pattern) and five water molecules. Another barium salt, Ba(4DNPO)₂ ·?6H₂O (6), is a coordination polymer, the ten-coordinate (BaO₁₀) barium environment comprising four water molecules, a pair of 4DNPOs via the pyridine-N-oxide oxygen, and one 4DNPOs from an adjacent metal atom offering chelating nitro group oxygen, bridging adjacent bariums. Abundant intermolecular hydrogen bonds link the molecules of each complex into multi-dimensional chains. The X-ray powder diffraction analysis confirmed the phase homogeneity of the polycrystalline samples. The TG-DSC results revealed that Mg(2DNP)₂ ·?8H₂O and Ba(4DNP)₂ ·?6H₂O each has three main weight-loss stages. The first step is the loss of all water molecules and the last step is the loss of the nitro groups and/or decomposition of the pyridine rings with the release of heat.     

Crystal structure of tetraethylammonium fluoride-water (4/11), 4(C2H5)4N+F− · 11H2O,a clathrate hydrate containing linear chains of edge-sharing (H2O)4F− tetrahedra and bridging water molecules

Crystals of 4(C₂H₅)₄N⁺F^– · 11H₂O are orthorhombic, space groupPna2₁, witha=16.130(3),b=16.949(7),c=17.493(7) Å, andZ=4. The structure was shown to be a clathrate hydrate containing infinite chains of edge-sharing (H₂O)₄F^– tetrahedra extending parallel to thea axis. The chains are laterally linked by bridging water molecules to form a three-dimensional hydrogen-bonded anion/water framework. The ordered (C₂H₅)₄N⁺ cations occupy the voids in two open channel systems running in theb andc directions. FinalR _F =0.091 for 2278 observed MoK data measured at 22°C. Supplementary Data: relating to this article are deposited with the British Library as Supplementary Publication No. SUP 82010 (20 pages).Dedicated to Professor H. M. Powell.     

单核Zn(Ⅱ)/Ni(Ⅱ)含氮配体配合物的合成、晶体结构及性质

合成了2个新的配合物[Zn(BPP)2(H2O)4](2,6-NDS)·0.5H2O(1)和[Ni(phen)2(H2O)2](A-2,5-DSA)·3H2O(2)(2,6-NDS=2,6-萘二磺酸根,A-2,5-DSA=苯氨-2,5-二磺酸根,BPP=1,3-二(4-吡啶基)丙烷,phen=1,10-邻菲咯啉),用X-射线单晶衍射结构分析方法测定了配合物的晶体结构。配合物1是单核分子,Zn2+离子与2个1,3-二(4-吡啶基)丙烷的2个N原子及4个水分子配位,形成单核配位阳离子。相邻配位阳离子通过配位水分子与氮原子的氢键作用联接成一维双螺旋阳离子链。双螺旋阳离子链与未配位的2,6-萘二磺酸根阴离子通过氢键作用形成二维超分子网。配合物2是单核分子,Ni2+离子与2个1,10-邻菲咯啉分子中的4个N原子及2个水分子配位,形成单核配位阳离子。配位阳离子与游离的水分子及苯氨-2,5-二磺酸根阴离子通过氢键作用构筑成二维超分子网。     

Crystal structure analysis of the carbon tetrabromide clathrate of hexakis(phenylseleno)benzene

The 12 inclusion compound of hexakis(phenylseleno)benzene (1) with CBr₄ is trigonal, space groupR , witha=14.474(3),c=21.487(4) Å, and three host and six guest molecules in a unit cell referred to hexagonal axes. A true clathrate structure is found and in each closed cage there are two carbon tetrabromide guest molecules, orientated such that a C–Br bond of each is colinear with thec-axis of the crystal. Supplementary Data relating to this article are deposited with the British Library as Supplementary Publication No. SUP 82002. To obtain copies, see page ii of this issue.     

Crystal structure of the phenylacetylene-choleic acid

Deoxycholic acid (C₂₄H₄₀O₄, M _r =392.58) and phenylacetylene (C₈H₆, M _r =102.14) form a 2:1 inclusion compound which crystallizes in space groupP2₁2₁2₁ witha=25.542(6),b=13.662(5),c=7.227(2) Å,Z=4. The finalR is 0.07₁ for 2168 observed reflections withI>1.5(I). The crystal packing is characterized by an assembly of antiparallel pleated bilayers of deoxycholic acid molecules which leave empty channels running alongc. Phenylacetylene molecules are accommodated within the cavities in an ordered fashion and are very probably arranged in only one orientation, which was determined by means of Van der Waals energy calculations. Atoms of deoxycholic acid belonging to ring A and to the side-chain are engaged in binding interactions with the guest molecule. The arrangement of the guest molecules supports the experimental results of irradiation, which show a failure of the phenylacetylene molecules to undergo inclusion polymerization. Supplementary Data relevant to this paper have been deposited with the British Library Lending Division under SUP No. 82024 (13 pages).     

Synthesis, spectroscopy and supramolecular structures of two magnesium 4-nitrobenzoate complexes

The aqueous reaction of [Mg(H₂O)₆]Cl₂ with the in situ generated sodium salt of 4-nitro-benzoic acid (4-nbaH) and N-methylimidazole (N-MeIm) results in the formation of the dinuclear complex [Mg(H₂O)(N-MeIm)₂(4-nba)₂]₂ 1 (4-nba = 4-nitro benzoate), while the direct reaction of [Mg(H₂O)₆]Cl₂ with sodium 4-nba leads to the formation of the mononuclear complex, [Mg(H₂O)₆](4-nba)₂·2H₂O 2. In the centrosymmetric dimer 1, each Mg atom is coordinated to an aquo ligand, two monodentate N-MeIm ligands and a monodentate 4-nba ligand. The second 4-nba ligand functions as a bridging bidentate ligand, linking the metal centers and completes the hexacoordination around each Mg(II). The dimeric molecules of 1 are linked into a one-dimensional chain along b with the aid of intra-as well as intermo-lecular H-bonding interactions between the coordinated water and the free oxygen atom of the monodentate 4-nba ligand. In the mononuclear complex [Mg(H₂O)₆](4-nba)₂·2H₂O 2, the Mg(II) is located on an inversion center and its structure consists of an octahedral [Mg(H₂O)₆]²⁺ dication, a free uncoordinated 4-nba anion and a lattice water molecule. One of the H atoms attached of the lattice water is disordered over two positions. The hexaaquomagnesium(II) dication, the 4-nba anion and the lattice water molecule are linked by intra- and intermolecular H-bonding interactions resulting in the formation of alternating layers of [Mg(H₂O)₆]²⁺ dications and 4-nba anions in the crystallographic bc plane. The lattice water molecules are situated between the cations, while the 4-nba anions are arranged antiparallel to each other along b. Dedicated to Prof. Dr. Werner Weisweiler on the occasion of his 69th birthday     

Reaction of trimethylaluminum with crown ethers. III. The synthesis and crystal structure of (12-crown-4)bis(trimethylaluminum)

The crown ether 12-crown-4 reacts with trimethylaluminum in toluene to form the complex [AlMe₃]₂[12-crown-4]. Attempts to utilize the remaining two oxygen atoms for coordination to AlMe₃ molecules were unsuccessful. The 21 complex crystallizes in the monoclinic space groupP2₁/n witha=11.342(7),b=12.941(4),c=6.973(6) Å, and =95.48(4)°. Refinement led to a finalR value of 0.047 for 925 observed reflections. The molecule resides on a crystallographic center of inversion, and as required by symmetry, the four oxygen atoms are planar. The Al–O bond is strong as revealed by the bond length of 1.977(3) Å. Supplementary Data relating to this article are deposited with the British Library as Supplementary Publication No. SUP 82013 (9 pages).