Weak hydrogen-, halogen- and stacking ππ bonding in crystalline 5-chloro-1-indanone. An analysis by using X-ray diffraction, vibrational spectroscopy and theoretical methods

Intermolecular forces of C–HO, C–Hπ, COCl and ππ types are present in the stable triclinic crystal structure of 5-chloro-1-indanone. They are analysed from a geometrical point of view supported in some extent by the analysis of the vibrational spectrum of the titled compound. Moreover, the molecular structure of the isolated species is calculated by using ab initio as well as density functional theory (DFT) methods together an assortment of basis sets. In order to obtain some information about the influence of intermolecular forces on the molecular structure, the calculated geometries of a free molecule were compared with the experimental solid phase geometry determined by X-ray crystallography.An analysis and assignment of the vibrational spectrum of the 5-chloro-1-indanone is accomplished by using IR and Raman experimental data along with Pulay et al.’s scaled quantum mechanical force field (SQM) methodology starting from the theoretical B3LYP/6-31G(d) and BLYP/6-31G(d) force fields under C_s symmetry.     

Nonadiabatic dissociation dynamics of ClHD van der Waals complex initiated by electron detachment of Cl–HD

Nuclear dynamics following the electron detachment of the Cl⁻–HD anion is investigated by a time-dependent wave packet propagation approach. Photodetachment of Cl⁻–HD promotes it to the van der Waals well region of the reactive ClHD potential energy surface. The latter is a manifold of three electronic states coupled by the electronic and (relativistic) spin-orbit coupling. Among the three surfaces, the electronic ground one is of ²Σ_1/2 type and yields products in their electronic ground state. The remaining two, ²Π_3/2 and ²Π_1/2, on the other hand, yield products in their excited electronic states. However, these two can yield products in their electronic ground state via nonadiabatic transitions to the ²Σ_1/2 state. The channel specific, HCl + D or DCl + H or Cl + HD, dissociation probabilities on this latter state are calculated both in the uncoupled and coupled surface situations. Separate initial transitions (via, photodetachment) to the ²Σ_1/2, ²Π_3/2 and ²Π_1/2 adiabatic electronic states of ClHD are considered in order to elucidate the nonadiabatic coupling effects on this important class of chemical reactions initiated by an electron detachment.     

Specific crystal structure of poly(3-hydroxybutyrate) thin films studied by infrared reflection–absorption spectroscopy

Infrared reflection–absorption (IR-RAS) and transmission spectra were measured for poly(3-hydroxybutyrate) (PHB) thin films to explore its specific crystal structure in the surface region. As IR-RAS is sensitive to the vibration mode of perpendicular orientation of the surface, differences between IR-RAS and transmission spectra indicate an orientation of the lamella structure in the surface of PHB thin films. The relative intensity of the crystalline CO stretching band in the IR-RAS spectrum is significantly weaker than that in the transmission spectrum. It may be concluded that the transient dipole moment of the CO stretching mode of the crystalline state is not oriented perpendicular but nearly parallel to the substrate surface. On the other hand, the relative intensity of the band at 3009 cm⁻¹ due to the C–H stretching mode of the C–HOC hydrogen bonding is similar between the IR-RAS and transmission spectra, suggesting that the C–H bond is oriented neither perpendicular nor parallel to the substrate surface but in an intermediate direction. Since the CO group of the C–HOC hydrogen bonding is oriented nearly parallel to the surface and its C–H group is in the intermediate direction, it is very likely that the C–HOC hydrogen bonding has a somewhat bent structure. These results are in good agreement with our previous conclusion that the C–HOC hydrogen bonding of PHB exists along the a-axis (not the b-axis) between the CH₃ group of one helix and the CO group of another helix.     

Crystal structure of olanzapine and its solvates. Part 3. Two and three-component solvates with water, ethanol, butan-2-ol and dichloromethane

Crystalline solvates of olanzapine (1), 2-methyl-4-(4-methyl-1-piperazinyl)-10H-thieno[2,3-b][1,5]benzodiazepine, have been characterized by an X-ray analysis and thermal (DSC) data. Crystallization of 1 from ethanol gives a solid containing both water and ethanol molecules; the solvate 1 · H₂O · EtOH (2:2:1) is monoclinic with the space group P2₁/c and the unit-cell volume V = 3752.8(12) Å³. Butan-2-ol forms with 1 solvate which is also a three-component phase, 1 · H₂O · BuOH, but its stoichiometry is different (1:1:1). The space group for this crystal is P2₁/c and the unit-cell volume V = 2216.5(7) Å³. Crystalline olanzapine dichloromethane solvate (2:1), 1 · CH₂Cl₂, is triclinic with the space group .The characteristic feature of all crystal structures is presence of a pair of olanzapine molecules which form dimer stabilized by multiple weak C–Hπ interactions between the N-methylpiperazine fragment and the phenyl / thiophene systems. Theoretical calculations have been performed indicating that the total C–Hπ binding energy is about 8 kcal mol⁻¹. In the crystal structure, the self-assembled olanzapine molecular dimers are arranged into parallel crystal planes. Packing of the layers proceeds in two ways in which structural motives are replicated by (i) perpendicular translation forming columns, and (ii) rotation around the twofold screw axis (parallel to the layer).     

The catalytic effects of various third molecules on reaction channels of weakly bound complex CO2HF systems in the vapor phase

In this investigation, reaction channels of weakly bound complexes CO₂HF, CO₂HFH₂O, CO₂HFNH₃, CO₂HFCH₃OH, CO₂HFNH₂CH₃, CO₂HFNH(CH₃)₂ and CO₂HFN(CH₃)₃ systems were studied at the B3LYP/6-311++G(3df,2pd) level. The conformers of syn-fluoroformic acid or syn-fluoroformic acid plus a third molecule (H₂O, NH₃, CH₃OH, NH₂CH₃, NH(CH₃)₂ or N(CH₃)₃) were found to be more stable than the conformers of the related anti-fluoroformic acid or anti-fluoroformic acid plus a third molecule (H₂O, NH₃, CH₃OH, NH₂CH₃, NH(CH₃)₂ or N(CH₃)₃). However, the weakly bound complexes were found to be more stable than either the related syn- and anti- type fluoroformic acid or the acid plus third molecule (H₂O, NH₃, CH₃OH, NH₂CH₃, NH(CH₃)₂ or N(CH₃)₃) conformers. They decomposed into CO₂+HF, CO₂+H₃OF, CO₂+NH₄F, CO₂+(CH₃)OH₂F, CO₂+NH₃(CH₃)F, CO₂+NH₂(CH₃)₂F, or CO₂+NH(CH₃)₃F combined molecular systems. The weakly bound complexes have seven reaction channels, each of which includes weakly bound complexes and their related systems. Moreover, each reaction channel includes two transition state structures. The transition state between the weakly bound complex and anti-fluoroformic acid type structure (T₁₃) is significantly higher than that of internal rotation (T₂₃) between the syn- and anti-FCO₂H (or FCO₂HH₂O, FCO₂HNH₃, FCO₂HCH₃OH, FCO₂HNH₂CH₃, FCO₂HNH(CH₃)₂, or FCO₂HN(CH₃)₃) structures. However, adding the third molecule H₂O, NH₃, CH₃OH, NH₂CH₃, NH(CH₃)₂ or N(CH₃)₃ can significantly reduce the activation energy of T₁₃. The catalytic strengths of the third molecules are predicted to follow the order H₂O<NH₃<CH₃OH<.NH₂CH₃<NH(CH₃)₂<N(CH₃)₃.     

Monomer insertion mechanism of ring-opening polymerization of -caprolactone with yttrium alkoxide intermediate: A DFT study

The mechanism of -caprolactone (CL) insertion into a Y–OCH₃ bond was investigated using density functional theory (DFT) calculations. The optimized geometries and corresponding Gibbs-free energies of the intermediates were obtained, which confirmed a four-step coordination-insertion mechanism. The coordination of CL onto yttrium center led to a nucleophilic addition of the carbonyl group of CL, followed by an intramolecular alkoxide ligand exchange. A monomer insertion was completed by the CL ring opening via acyl–oxygen bond cleavage. The formation of the five-coordinated yttrium intermediate, 3, was found to be the rate-determining step. This study could be applicable to ring-opening polymerisation (ROP) of CL initiated by lanthanide metal complexes.     

C–HPt(II) interaction-controlled self-assembly and photophysics of chiral bis(pyrrol-2-ylmethyleneamino)cyclohexane platinum(II) complexes

Reaction of (R,R)-(−)- and (S,S)-(+)-1,2-bis(pyrrol-2-ylmethyleneamino)cyclohexane with K₂PtCl₄ afforded chiral, neutral platinum(II) Schiff base complexes of (R,R)-PtL and (S,S)-PtL with high yields. The rare C–HPt(II) intermolecular interaction was found to show considerable strength and directionality for controlling M and P helical supramolecular architectures of (R,R)-PtL and (S,S)-PtL, respectively, in crystal lattices. More importantly, the open square-planar geometry of platinum(II) complexes allows axial C–HPt(II) interaction, resulting in the ³(ππ^*) excited state with some mixing of the Pt(II) metal character observed both in concentrated solutions and in the solid state at room temperature.     

Ion transfer across liquidliquid interfaces from transition-state theory and stochastic molecular dynamics simulations

We investigate the kinetics and dynamics of ion transfer across liquidliquid interfaces. We calculate the potential of mean force (pmf) of ion transfer from Monte Carlo simulations of a lattice–gas model, assuming independent chemical and electrostatic contributions. The shape of the pmf justifies considering the transfer as activated. The kinetics are obtained from transition-state theory and independently from stochastic molecular dynamics simulations. Both methods yield consistent results, with straight Tafel plots and friction effects in line with Kramers’ theory, but stronger than for a diffusing particle. A higher friction makes barrier recrossing more likely.     

Facile hydrosilylation of norbornadiene by silanes R3SiH and R2SiH2 with molybdenum catalysts

Photochemically activated [Mo(CO)₆] and [Mo(CO)₄(η⁴-nbd)] have been demonstrated to be very effective catalysts for hydrosilylation of norbornadiene (nbd) by tertiary (Et₃SiH, Cl₃SiH) and secondary (Et₂SiH₂ and Ph₂SiH₂) silanes to give 5-silyl-2-norbornene, which under the same reaction conditions transform in ring-opening metathesis polymerization (ROMP) to unsaturated polymers and to a double hydrosilylation product, 2,6-bis(silyl)norbornane. The yield of a particular reaction depends very strongly on the kind of silane involved. The reaction products were identified by means of chromatography (GC–MS) and ¹H and ¹³C NMR spectroscopy. In photochemical reaction of [Mo(CO)₄(η⁴-nbd)] and Ph₂SiH₂ in cyclohexane-d₁₂, η²-coordination of the SiH bond to the molybdenum atom is supported by ¹H NMR spectroscopy due to the detection of two equal-intensity doublets with ²J_HH = 5.4 Hz at δ 6.12 and −5.86 ppm.     

Boron trifluoride-catalyzed degradation of poly--caprolactone at ambient temperature

Poly--caprolactone (PCL) can be accelerated to degrade in the presence of boron trifluoride at ambient temperature. The degradation behaviors were studied by using the inherent viscosity measurement, gel permeation chromatography (GPC), infrared analysis (FTIR), nuclear magnetic resonance analysis (NMR), and thermal analysis (DSC). With increasing the addition amount of boron trifluoride, the molecular weight of PCL decreases; the molecular weight distribution is broadened; and the degree of crystallinity of PCL increases at first at low BF₃ level, then decreases when BF₃ content exceeds to 2.64 wt%. The results of IR, ¹HNMR and GPC reveal that -caprolactone monomer does not occur and the main degradation products are the oligomers of PCL with low molecular weight. The mechanism for boron trifluoride-catalyzed degradation of PCL is discussed.     

Homogeneous and supported copper(II) acetate as catalyst for CO coupling reactions

The reactivity of copper(II) acetate as catalyst in a standard CO coupling reaction has been systematically evaluated. Optimization of the reaction conditions resulted in a protocol involving stoichiometric amounts of reagents, a substoichiometric amount of base and 20 mol% catalyst, at 50 °C in 1,2-dichloroethane and under 1 atm O₂. Next, the reactivity of polymer-supported copper(II) acetate was evaluated. Although it is found that, in contrast to previous results obtained in related CN coupling reactions, the polymer-supported catalyst is in this case less efficient than the corresponding homogeneous one, the catalyst turns out to be conveniently recovered from the reaction mixture by simple filtration.     

Infrared diode laser spectroscopy of the ν = 2 band of AlF

A vibrational–rotational spectrum of the ν = 2 transitions of a high-temperature molecule AlF was observed between 1490 and 1586 cm⁻¹ with a diode laser spectrometer. Measurements were made on the ν = 3–1, 4–2, 5–3 and 8–6 bands at a temperature of 900 °C. Measured spectral lines were fitted to effective band constants ν₀, B_ν and D_ν for each band. Present measurements were made with only one Pb-salt laser diode. Physical significance of the effective band constants is discussed.     

Particle size and concentration of poly(-caprolactone) and adipate modified starch blend on mineralization in soils with differing textures

The objective of this study was to evaluate the effect of particle size and concentration of poly(-caprolactone) and adipate modified starch blend on mineralization in soils with differing textures, comparing it with polyethylene under the same experimental conditions. Two soil types were used: a Kandiudalfic Eutrudox with a clayey texture and an Arenic Hapludult with a sandy texture. The two different plastic specimens were incorporated in the form of plastic films with three increasing particle sizes and six doses, from 0 to 2.5 mg C g⁻¹ soil. Each plastic dose was incorporated into 200 g of soil placed in a hermetically closed jar at 28 °C, and incubated for a 120-day period to determine CO₂ evolution. Once again it was confirmed that polyethylene is almost non-biodegradable, in contrast to PCL/S, which can be defined as a biodegradable material. Soil texture affected the mineralization kinetics of the plastic specimens, with higher values for the clayey soil. No changes in soil microbial biomass-C or -N were observed by adding polyethylene and PCL/S to the soil. Also, no significant differences were observed on seed emergence and development of rice seedlings (Oryza sativa L.) in plastic modified soil.     

Novel BrФnsted Acidic Ionic Liquid Based on a Cyclic Guanidinium Cation： a Green, Efficient, and Recyclable Dual Slovent-catalyst System for Fisher Esterification

A novel Brфnsted acidic ionic liquid(IL)based on the cyclic guanidinium cation has been synthesized.This IL,as a strong Brфnsted acid catalyst or solvent,shows high catalytic activity and biphsaic behavor in the esterifications of carboxylic acids and alcohols.The produced esters as a separate phase can be conveniently decanted out from the IL and the IL is recyclable without any loss of catalytic activity.     

Theoretical investigation of C–HM interactions in organometallic complexes: A natural bond orbital (NBO) study

The nature of C–HM agostic interactions in model metal complexes [M²⁺(CH₂CH₃)(PH₃)_nCl] (where M = Sc, Ti, V, Ti, Cr, Mn, Fe, Co, Ni, Cu, Zn; n = 1, 2, 3, 4) was studied with the natural bond orbital analysis (NBO) approach using density functional theory (DFT) optimized geometries at the B3LYP/6-31G(d,p) level of theory. The effect of nature of metal, coordination number, oxidation state and ligand field effects on the agostic interaction is examined. A set of 20 crystal structures of organometallic complexes taken from the Cambridge Structural Database (CSD) was studied computationally employing AIM theory and NBO analysis, and the applicability of these methods was critically accessed in demarcating the two types of interaction.     

Conformational influences of the polymorphic forms on the CO and C–H stretching modes of five saturated monoacid triglycerides studied by Raman spectroscopy at various temperatures

A study of the vibrational behavior of five saturated monoacid triacylglycerides is performed by Raman spectroscopy at various temperatures in two separate spectral ranges: 1780–1700 and 3100–2650 cm⁻¹. The samples are studied in polycrystalline phase at room temperature, in isotropic liquid phase, and in polycrystalline phase after cooling from the isotropic liquid phase. The CO stretching mode of these triglycerides changes significantly according to the temperature: we observe three components, or an unresolved doublet, or a resolved doublet. The I(2845)/I(2880) ratios (in the C–H stretching spectral region) of the different saturated monoacid triglycerides vary also according to the temperature. The study of these two indicators (the CO stretching mode and the I(2845)/I(2880) ratio) has permitted us to determine the polymorphic forms of the studied triglycerides.     

Degradation of copolymers obtained by ring-opening polymerization of glycolide and -caprolactone: A high resolution NMR and ESI-MS study

Electrospray ionization-mass spectrometry (ESI-MS) and proton nuclear magnetic resonance (¹H NMR) have been used to investigate the hydrolytic degradation of copolymers obtained by bulk ring-opening copolymerization of glycolide and -caprolactone with monomer ratios ranging from 70/30 to 30/70. NMR allows changes of the average sequence distribution and composition of the components to be followed. In contrast, ESI-MS is able to reveal the detailed chemical structures of various sequences despite the molecular weight limit of 2000 Da. Combination of ESI-MS with NMR can thus provide information to describe microstructure changes during degradation. The distribution of various oligomers shown in the form of planar projections is of great interest for the design of biodegradable system aimed at medical applications.     

Blue-shifting intramolecular CH O(S) contacts in sterically strained systems

A group of model systems which may form chelate-type structures with intramolecular CH  Y (Y = O, S) contact is investigated computationally. The existence of several conformers permits to identify a reference molecule without the CH  Y intramolecular contact and to establish the blue-shifting character of this interaction. The CH stretching frequency in chelate forms is found to increase with respect to its value in the reference system. A parallel decrease of the CH bond distance is also established. The blue-shifting character of the intramolecular CH  Y contact is interpreted in terms of the sterically enforced repulsion between the hydrogen atom in CH and the electron donor Y. This interpretation is supported by the negative (repulsive) estimates of the energy contribution due to CH  Y contacts.     

Theoretical study of the influence of para- and meta-substituents on X-pyridineHF hydrogen bonding

The effects of O⁻, N (CH₃)₂, NH (CH₃), NH₂, C₂H₅, CH₃, OH, F, Cl, OF, Br, NO₂ and substituents in para- and meta-positions on X-pyridineHF hydrogen bond has been studied by HF, B3LYP and MP2 methods using 6-311++G(d,p) basis set. The relationship between hydrogen bond formation energy ΔE and electron donating (or withdrawing) of substituents has been investigated. In this respect, population analysis has been performed by atoms in molecules (AIM) and natural bond orbital (NBO) theories. The results of AIM and NBO analyses are in good agreement with calculated energy values. The relationship between Hammett coefficient and complexation energy has been established and the ρ constant has been calculated for hydrogen bonding. There is a relationship between σ and ΔE with a correlation coefficient equal to 0.94.