5-氯尿嘧啶质子转移异构化的密度泛函理论研究

采用密度泛函B3LYP/6-311+G**方法,对5-氯尿嘧啶分子内质子转移及水助催化质子转移引起的互变异构反应机理进行了计算研究,获得了互变异构过程的反应焓、活化能、活化吉布斯自由能和质子转移反应的速率常数等参数。计算结果表明,5-氯尿嘧啶无论是孤立分子还是一水合物,其双酮式CU1是最稳定异构体,由双酮式向烯醇式异构化找到3条通道(P1,P2,P3),各通道速控步骤的活化能分别为177.85、177.05和197.58kJ/mol。当水分子参与反应以双质子转移机理异构化时,活化能显著降低,各通道速控步骤的活化能依次降为66.24、69.36和77.85kJ/mol,有利于双酮式向烯醇式或酮醇式转变。计算结果还表明,氢键作用在增大5-氯尿嘧啶一水复合物稳定性、降低质子转移异构化反应活化能等方面起着重要作用。     

5-氟胞嘧啶互变异构的密度泛函理论计算

采用BH-HLYP/6-311＋G**方法对10种气相和水相中可能存在的5-氟胞嘧啶互变异构体进行了几何全优化, 并计算出它们的总能量和吉布斯自由能. Onsager反应场溶剂模型用于水相的计算. 计算结果表明, 5-氟胞嘧啶在气相中主要以烯醇式-氨基式形式存在, 在水相中主要以酮式-氨基式形式存在. 溶剂化自由能与异构体的气相偶极矩存在相关性．进一步求得互变异构化以及构象异构化和顺反异构化的过渡态, 探讨异构化过程中的几何结构和能量的变化.     

胞嘧啶一水复合物质子转移异构化反应机理的理论研究

采用密度泛函B3LYP方法,在6-311＋G＊＊基组水平上对胞嘧啶一水复合物质子转移引起的氨-酮式、氨-烯醇式与亚胺-酮式互变异构反应机理进行了计算研究,获得了互变异构过程的反应焓、活化能、活化吉布斯自由能和质子转移反应速率常数等参数。将Onsager反应场溶剂模型用于水相的计算,结果表明,胞嘧啶一水复合物无论在气相中...     

2,6-二巯基嘌呤质子转移异构化的密度泛函理论研究

采用密度泛函B3LYP方法, 在6-311＋G(d,p)基组水平上对2,6-二巯基嘌呤质子转移引起的硫醇式与硫酮式互变异构反应进行了计算研究, 获得了互变异构过程的反应焓、活化能、活化吉布斯自由能和质子转移反应的速率常数等性质. 计算结果表明, 2,6-二巯基嘌呤无论是孤立分子还是一水合物, 其二硫酮式R是最稳定异构体. 由二硫酮式通过分子内质子转移向二硫醇式异构化共有6条反应通道, 其主通道(1)速控步骤的活化能为139.1 kJ•mol^－1, 速率常数为2.16×10^－12 s^－1; 当水分子参与反应以双质子转移机理异构化时, 活化能显著降低, 有利于硫酮式向硫醇式转变, 其主通道(7)速控步骤的活化能为61.3 kJ•mol^－1, 速率常数为1.33×10 s^－1. 计算结果还表明, 氢键作用在增大2,6-二巯基嘌呤氢键一水合物稳定性、降低质子转移异构化反应活化能等方面起着重要的作用.     

3-羰基吡唑质子转移过程的理论研究

采用密度泛函B3LYP／6—311G^＊＊方法,对3-羰基吡唑几何构型进行了全自由度优化,获得了它们的几何结构和电子结构．计算并考察了3-羰基吡唑的两种构象即syn和anti构象的稳定性以及3-羰基吡唑进行结构互变的质子转移过程的四种可能途径：（a）分子内质子转移;（b）水助质子转移;（C）同种二聚体双质子转移;（d）异种二聚体双质子转移．计算结果表明3-羰基吡唑的syn构象中N2-H型的稳定性大于N1-H型,进行质子转移时途径（C）所需要的活化能最小（52．78kJ／mol）,途径（a）所需要的活化能最大（200．59kJ／mol）;3,羰基吡唑的。anti构象中N1-H型的稳定性大于N2-H型,进行质子转移时途径（d）所需要的活化能最小（61．09kJ／mol）,途径（a）所需要的活化能最大（204．15kJ／mol）．     

3-卤代吡唑质子转移过程的理论研究

采用密度泛函B3LYP/6-311G**方法,对3-卤(-F、-Cl、-Br)代吡唑几何构型进行了全自由度优化,获得了它们的几何结构和电子结构。计算结果显示,N1-H型的稳定性大于N2-H型。计算并考察了3-卤代吡唑进行结构互变的质子转移过程的四种可能途径:(a)分子内质子转移;(b)水助质子转移;(c)同种二聚体双质子转移;(d)异种二聚体双质子转移。计算结果表明(以3-氟代吡唑为例),途径d所需要的活化能最小(54.89 kJ/mol),而途径a所需要的活化能最大(198.83kJ/mol),途径b和c的活化能居中间分别为(104.05 kJ/mol和69.05 kJ/mol)。研究还表明氢键在降低活化能方面起着重要的作用,卤素(-F、-Cl、-Br)对活化能的影响不大。     

三羟甲基氨基甲烷水杨醛类席夫碱质子转移异构化的理论研究

采用密度泛函(DFT)中的B3LYP方法,在6-311+G(d,p)基组水平上对三羟甲基氨基甲烷水杨醛席夫碱气相、水溶剂及甲醇溶剂中的分子内质子转移和衍生席夫碱的互变异构反应机理进行了计算研究,获得了反应焓、活化能、活化吉布斯自由能和质子转移反应的速率常数等参数.液相计算采用Onsager模型.结果表明,不论在气相、水溶剂还是甲醇溶剂中,三羟甲基氨基甲烷水杨醛席夫碱(L3=H,L5=H)烯醇亚胺式异构体R1和醌型的酮烯胺异构体P1可以共存,但以苯环型的烯醇亚胺式R1为主要形式.当由苯环型的烯醇亚胺R1向醌型的酮烯胺P1分子内质子转移时活化能较低,室温常压下反应容易进行.水和甲醇溶剂对异构化反应影响较小.当—NO2,—OMe取代生成衍生席夫碱时(L3=H,L5=NO2;L3=OMe,L5=H),结果表明,苯环型的烯醇亚胺式和醌型的酮烯胺式异构体都能共存,质子转移异构化反应的活化能垒也较低.     

2-羟基吡啶质子转移过程的理论研究

采用量子化学中的密度泛函理论,在B3LYP/6-31G(d)基组水平上,计算并考察了2-羟基吡啶分子醇式结构和酮式结构进行结构互变的质子转移过程中的4种可能途径:(a)分子内质子转移,(b)水助催化质子转移,(c)同种二聚体双质子转移和(d)异种二聚体间双质子转移.计算结果表明,途经c所需要的活化能最小(2.6 kJ•mol－1,逆反应则为27.1 kJ•mol－1),而过程a所需要的活化能最大(137.2 kJ•mol－1),途径b和d的活化能居中间(分别为38.7和17.3 kJ•mol－1).研究还表明,氢键在降低反应活化能方面起着重要的作用.     

水对5-氟尿嘧啶质子转移影响规律的研究

采用密度泛函理论(DFT)B3LYP方法, 在6-311++G(d, p)基组上研究了由质子转移引起的5-氟尿嘧啶(5-FU)的异构化反应. 共研究了38个含水与不含水的构型, 其中包括15个过渡态结构. 研究发现, 在5-氟尿嘧啶周围存在两类不同的区域, 在其中一类区域中, 水分子能促进质子转移的发生；而在另一类区域中, 水分子却能阻碍质子转移的发生. 通过与尿嘧啶质子转移过程相比较, 发现在各种情况下5-氟尿嘧啶异构化为烯醇式的几率均比尿嘧啶的大, 在一定程度上解释了为什么5-氟尿嘧啶具有优良抗癌作用的同时具有一定的毒副作用.     

3-羟基哒嗪及其CH3,NO2和CI取代衍生物质子转移过程的理论研究

用密度泛函理论(DFT)B3LYP方法,在6-311+G*基组下,对3-羟基哒嗪及其CH3,NO2和Cl取代衍生物分子醇式和酮式结构互变异构化反应进行了研究,优化化合物的几何构型,寻找反应的过渡态,通过振动分析和内禀反应坐标(IRC)分析加以证实,计算了反应的活化能.结果表明,3(2H)-哒嗪酮及其带取代基的衍生物不论是单体,还是相对应的二聚体,比其相对应的异构体能量低,表明在通常情况下是以3(2H)-哒嗪酮及其衍生物形式稳定存在的,这与前人通过实验数据对3-羟基哒嗪互变异构体的比率进行预测的结果是一致的.根据计算结果讨论了异构化反应的机理.     

黄嘌呤异构体质子转移异构化反应机理的理论研究

采用量子化学密度泛函B3LYP/6-31G(d,p)和M06-2X/6-311++G(d,p)方法对黄嘌呤两种酮式异构体X(1,3,7)与X(1,3,9)间质子转移引起的互变异构反应机理进行了计算研究,获得了异构化反应过程的反应焓﹑活化吉布斯自由能和质子转移反应的速率常数等参数。水相计算采用极化连续(PCM)模型。结果表明,由于可能的氢迁移顺序差异,分子内由X(1,3,7)向X(1,3,9)异构化可能共有16条反应通道,涉及11个中间体和20个过渡态,其主反应通道速控步骤的活化吉布斯自由能为183.10k J/mol,速率常数为5.17×10-20s-1,其余各通道速控步骤活化吉布斯自由能均较高,而且整体水溶剂效应不利于质子转移的发生。     

尿嘧啶水助质子转移反应机理的研究

用密度泛函理论,在B3LYP/6-311++G**计算水平下分别对尿嘧啶所有的气相、液相、过渡态和质子转移异构体的结构进行全优化,获得它们在气相和水相中的几何结构和电子结构,PGM反应场溶剂模型用于水相计算.结果显示:在气相和水相中,水参与反应降低了互变异构质子迁移的反应活化能,对互变异构质子迁移的反应起到催化作用,但...     

Theoretical study of the reaction mechanism of proton transfer in glycinamide

To investigate the tautomerism of glycinamide that is induced by proton transfer, we present detailed theoretical studies on the reaction mechanism of both the isolated gas phase and H₂O‐assisted proton transfer process of glycinamide, using density functional theory calculations by means of the B3LYP hybrid functional. Twenty‐six geometries, including 10 significant transition states, were optimized, and these geometrical parameters are discussed in detail. The relative order of the activation energy for hydrogen atom transfer of all the conformers has been systematically explored in this essay. For the amido hydrogen atom transfer process, the relative order of the activation energy is: IV < II < III < I, while in the carbonic hydrogen atom transfer process, the relative order is IV > II > III > I. Meanwhile, the most favorable structure for both the amido hydrogen atom transfer and the carbonic hydrogen atom transfer has been found. The involvement of the water molecule not only can stabilize the transition states and the ground states, but can also reduce the activation energy greatly. The superior catalytic effect of H₂O has been discussed in detail. © 2006 Wiley Periodicals, Inc. Int J Quantum Chem, 2006     

Theoretical study of the mechanism of proton transfer in tautomeric systems: Alloxan

Semiempirical SCF-MO studies of tautomerism in alloxan preclude the possibility of direct proton transfer in the gas phase due to the strain in the four-centred transition state, in which the proton being transferred is forced to come close to the positively charged carbon atom at the opposite corner of the four-membered ring. However, in aqueous solution, the activation barrier reduces appreciably, not only due to reduction in strain, but also due to charge separation in the transition state, which is stabilized due to ionic resonance. The N-H bond is almost broken, while the O-H bond is only partially formed in the transition state. The other stabilizing effect in aqueous solution is due to bulk solvent dielectric effects, which stabilize the transition state to a greater extent due to its higher dipole moment. Although the transition states for proton transfer to the neighbouring oxygen atoms on either side have comparable energies, as the mechanisms of proton transfer leading to the formation of the 2-hydroxy and 4-hydroxy tautomers are similar, bulk solvent effects are larger in the latter due to the higher dipole moment of the transition state. The reason is the almost complete separation of the two entities, i.e. the alloxan anion and the hydronium ion in the latter case, indicating that in this case a dissociative mechanism of the kind encountered in acid-base equilibria is operating.     

Tautomerism and proton transfer in photoionized acetaldehyde and acetaldehyde–water clusters

Understanding the gas‐phase chemistry of acetaldehyde can be challenging because the molecule can assume several tautomeric forms, namely keto, enol and carbene. The two last forms are the most stable ionic forms. Here, insight into the gas‐phase cluster ion chemistry of homogeneous acetaldehyde and mixed water–acetaldehyde clusters is provided by mass spectrometry/vacuum ultraviolet photoionization combined with density functional theory calculations. (AA)_nH⁺ clusters (AA = acetaldehyde) and mixed (AA)_nH₃O⁺ clusters were detected using tunable vacuum ultraviolet photoionization. Barrierless proton transfers were observed during the geometry optimization of the most stable dimer structures and helped to explain the cluster ion chemistry induced by photoionization, namely the formation of deprotonated tautomers and protonated keto tautomers. Water was found to catalyze the keto–enol and keto–carbene isomerizations and facilitate the proton transfer from the ionized enol or carbene part of the cluster to the neutral keto part, resulting in protonated keto structures. The production of protonated keto structures was identified to be the main fragmentation channel following ionization of the homogeneous acetaldehyde cluster and a channel for ionized mixed clusters as well. These findings are significant for a broad range of fields, including current atmospheric models, because acetaldehyde is one of the most prominent organic species in the troposphere and ions play a crucial role in aerosol formation. Copyright © 2014 John Wiley & Sons, Ltd.     

2,6-硫代黄嘌呤质子互变异构反应机理的理论研究

在密度泛函B3LYP/6-311G~(**)理论水平上,对气相和水相中2,6-硫代黄嘌呤各烯醇式与酮式水助质子互变异构体及其过渡态进行几何构型全自由度优化,获得它们在气相和水相中的几何结构和电子结构,PCM反应场溶剂模型用于水相计算.结果显示在气相和水相中,水参与反应降低了互变异构质子迁移的反应活化能,对互变异构质子迁移的反应起到催化作用,但是没有改变各异构体的稳定性顺序,其顺序为W1＞W3＞W2.进一步研究了2,6-硫代黄嘌呤各烯醇式与酮式水助质子互变异构的反应机理,提出了2,6-硫代黄嘌呤各烯醇式与酮式互变异构质子迁移的反应为平面六元环的过渡态结构.探讨了溶剂化效应对互变异构体的几何结构、能量、电荷分布以及互变异构反应活化能的影响等.     

Substituent effect on the reaction mechanism of proton transfer in formamide

MP2 and B3LYP methods at 6‐311++G** basis set have been used to explore proton transfer in keto‐enol forms of formamide and to investigate the effect of substituent, i.e., H, F, Cl, OH, SH, and NH₂ on their transition states. Additionally, the vibrational frequencies of aforementioned compounds are calculated at the same levels of theory. It is proposed that the barrier heights values in kJ/mol for F, Cl, OH, and SH substituents are significantly greater than that of the bare tautomerization reaction, implying the importance of the substituents effect on the intramolecular proton transfer. © 2011 Wiley Periodicals, Inc. Int J Quantum Chem, 2012     

Negative influence of pKa on activation energy barrier: A case study for double proton transfer reaction in inorganic acid dimers

Strength of acid can be determined by means of pK_a value. Attempts have been made to find a relationship between pK_a and activation energy barrier for a double proton transfer (DPT) reaction in inorganic acid dimers. Negative influence of pK_a is observed on activation energy (E_a) which is contrary to the general convention of pK_a. Four different levels of theories with two different basis sets have been used to calculate the activation energy barrier of the DPT reaction in inorganic acid dimers. A model based on first and second order polynomial has been created to find the relationship between activation energy for DPT reaction. © 2018 Wiley Periodicals, Inc.