Quantifying interactions between cell receptors and adhesion ligand-modified polymers in solution

Specific interactions between cells and cell-interactive polymers in solution were investigated by the fluorescence resonance energy transfer (FRET) technique and rheological measurements. The green fluorescence emission was dramatically reduced when rhodamine-stained cells were mixed with a fluorescein-labeled RGD-alginate solution, compared with those mixed with no RGD-containing alginate solution, which indicated an occurrence of FRET and existence of specific interactions between the cells and the polymers in solution. Rheological measurements also confirmed the formation of ordered structures of cell/polymer mixtures, caused by specific cell-polymer interactions. The FRET method was able to provide a useful means of investigating cell-polymer interactions, both in a qualitative and quantitative manner, and this approach to monitoring and controlling specific interactions between cells and polymers could be useful in the design and tailoring of polymeric carriers for cells, as well as for biological drugs, especially for tissue engineering applications.     

On the coupling between slow diffusion transport and barrier crossing in nucleation

We model the coupling between slow diffusion transport and nucleation using the diffusion equation, an Ostwald-Freundlich boundary condition, and a mass balance linking nucleus size to flux across the nucleus-solution interface. The model retains some characteristics of the classical nucleation theory because of the common theoretical foundations behind classical nucleation theory and the Ostwald-Freundlich equation. For example, the classically critical-sized nucleus in the uniform supersaturated concentration field is an unstable equilibrium point. However, the model also shows that certain types of concentration profiles can drive a classically pre-critical nucleus over the nucleation barrier. We identify the separatrix as a function of both nucleus size and characteristics of the local concentration field. Our analysis may be useful for understanding the effects of local concentration fluctuations and especially for understanding the role of dense precursor particles in driving two-step nucleation processes. Our analysis may also provide a starting point for further statistical field theory analyses of local concentration fluctuations and their effects on nucleation rates.     

Metal-carbon nanotube contacts: the link between Schottky barrier and chemical bonding

The field effect transistor based on carbon nanotubes (CNT) is a very promising candidate for post-CMOS microelectronics. Transport in the CNT channel is dominated by the Schottky barriers existing at the metal source contacts. The nature of the metal and the geometry of the contact appear to influence strongly the electrical behavior, but the mechanism is still rather obscure. Extensive calculations based on density functional theory performed for both end and side contacts and for two metals of very different nature, namely, Al and Pd, allow us to identify a clear connection between the character of the chemical bonding and the height of the Schottky barrier (SBH). Our results emphasize that a low SBH for hole conduction in a CNT implies that the pi-electron system of the latter is almost exclusively involved in the chemical bonding with the metal atoms at the interface and that the bonding is not too strong so that both orbital hybridization and topology are preserved. This is the case for Pd in both end and side configurations and to a large extent for Al but in the side geometry only. On the other hand, the coupling of the metal states with the sigma-like system or, in other words, the perturbation of the conjugation of the pi-system via sp3 C-hybridization is the mechanism that enhances the SBH. This is especially evident in the end contact with Al. By showing how the chemistry at the interfaces determines the SBH, our findings open the possibility of better controlling and designing "good contacts".     

Relationship between superelectrophilicity and the electrophilicity index of isolated species

We report a relationship between the superelectrophilicity of a series of dications and the electrophilicity index of isolated species. The enhanced electrophilicity is described by global and local reactivity indexes. Alkyloxonium and carboxonium dications and diprotonated carboxylic acids have been used as simple benchmark systems to discuss this relationship on a qualitative and quantitative basis. The theoretical scale of electrophilicity roughly reproduces the experimental superelectrophilicity hierarchy established on the basis of the (17)O and (13)C NMR chemical shifts in alkyloxonium and carboxonium ions and diprotonated carboxylic acids.     

Interplay between cationic and neutral species in the rhodium-catalyzed hydroaminomethylation reaction

The reactivity of [Rh(CO)(2){(R,R)-Ph-BPE}]BF(4) (2) toward amine, CO and/or H(2) was examined by high-pressure NMR and IR spectroscopy. The two cationic pentacoordinated species [Rh(CO)(3) {(R,R)-Ph-BPE}]BF(4) (4) and [Rh(CO)(2)(NHC(5)H(10)){(R,R)-Ph-BPE}]BF(4) (8) were identified. The transformation of 2 into the neutral complex [RhH(CO)(2){(R,R)-Ph-BPE}] (3) under hydroaminomethylation conditions (CO/H(2), amine) was investigated. The full mechanisms related to the formation of 3, 4 and 8 starting from 2 are supported by DFT calculations. In particular, the pathway from 2 to 3 revealed the deprotonation by the amine of the dihydride species [Rh(H)(2)(CO)(2){(R,R)-Ph-BPE}]BF(4) (6), resulting from the oxidative addition of H(2) on 2.     

Simple wavefunctions for dipositronium and the relationship between this species and the hydrogen molecule

Dipositronium (two electrons and two positrons) has a closer relationship to the hydrogen molecule than has often been assumed in past treatments. This article shows that appropriately modified mixtures of simple molecular orbital and Heitler–London wavefunctions are a good basis for the ground state of this species. © 2003 Wiley Periodicals, Inc. Int J Quantum Chem, 2004     

Ab initio study of bonding between nucleophilic species and the nitroso group

The bonding between anionic nucleophiles and the nitroso group has been studied in the common nitrosating agents nitroso chloride (ONCl), nitroso bromide (ONBr), nitroso thiocyanate (ONSCN), and dinitrogen trioxide (N2O3) in aqueous solution. A variety of theoretical methods were employed, including ab initio, density functional theory (DFT), and composite theoretical techniques, with solvent effects described using the polarizable continuum model (PCM). Experimental nitroso bond heterolytic dissociation free energies were accurately reproduced with a number of composite theoretical methods, the most successful being CBS-Q and G2MP2, with average errors of 3.1 and 3.4 kJ mol(-1), respectively. Using the MP2 and B3LYP methods, calculations were made with correlation consistent basis sets up to quadruple-zeta, extrapolated to the complete basis set (CBS) limit. The MP2/CBS calculations were accurate to around 10 kJ mol(-1), while the B3LYP/CBS calculations routinely overpredicted experimental bond free energies by ca. 40 kJ mol(-1). It is therefore highly recommended that B3LYP energies are not used for nitroso compounds, although other results demonstrate that the B3LYP method provides a good account of nitroso compound geometries, frequencies, and entropies. Single-point CBS energy calculations using MP2/aug-cc-pVQZ geometries and frequencies showed that the MP4(SDTQ) and QCISD(T) methods provide a slight improvement over MP2 at the CBS limit, although the inclusion of triple excitations is necessary to achieve this improvement in accuracy. Enthalpy-entropy compensation was also discovered, with an average isoequilibrium temperature of 825 K. This relatively large isoequilibrium temperature indicates that enthalpic effects dominate over entropic ones.     

Role of the azinomycin naphthoate and central amide in sequence-dependent DNA alkylation and cytotoxicity of epoxide-bearing substructures

Studies report a strong correlation between duplex DNA alkylation and in vitro cytotoxicity for a series of azinomycin partial structures 2-6 bearing the biologically relevant epoxide. Compounds lacking the naphthoate ester (e.g., 5 and 6) were poorly reactive toward DNA and were biologically inactive, as were compounds bearing the naphthoate but lacking the terminal carboxamide (e.g., 2). Compounds were evaluated for cytotoxicity against two breast cancer cell lines. [structure: see text]     

Pharmacokinetics in chimpanzees of recombinant human tissue-type plasminogen activator produced in mouse C127 and Chinese hamster ovary cells

Pharmacokinetics of recombinant tissue-type plasminogen activator (rt-PA) produced in mouse C127 cells (t-PA(C127] and Chinese hamster ovary cells (t-PA(CHO] was investigated in chimpanzees. rt-PA was administered via a constant rate i.v. infusion for 60 min, and t-PA concentration and activity in plasma were measured during and after infusion. The noncompartmental parameters were calculated according to the moment analysis method, and a population pharmacokinetic analysis was performed to obtain the mean and interindividual variability of the pharmacokinetic parameters. The mean residence time of t-PA(C127) was significantly longer and the total body clearance was significantly less than that of t-PA(CHO). t-PA(C127) has an alpha-galactosyl moiety in its carbohydrate chains, whereas such a structure is not found in t-PA(CHO). These results demonstrate that two preparations of rt-PA's with different carbohydrate structures show different pharmacokinetics, and suggest that the carbohydrate structure can affect the efficiency of hepatic uptake of t-PA. A possible mechanism is an interaction of t-PA(C127) with the natural anti-alpha-galactosyl antibody. The anti-alpha-galactosyl antibody level in plasma decreased in association with the plasma levels of t-PA(C127) but was unaffected by t-PA(CHO) levels.     

La-O小团簇上超氧物种与过氧物种间的连接途径

采用密度泛函理论方法考察了La-O团簇上超氧物种与过氧物种间转化的连接途径. 单重态下, 团簇上单个超氧物种可通过一系列臭氧物种转化为过氧物种, 且转化能垒较高;三重态下, 单个超氧物种则并无与过氧物种间连接的途径. 然而, La-O团簇上两超氧物种间的相互作用及其转化也具单重态和三重态两条途径. 三重态下, 超氧物种可很容易地转化为过氧物种(O₂^- + O₂^-↔O₂^2- + O₂), 超氧物种与过氧物种处于快速的交换状态之中;单重态下, 超氧物种转化为过氧物种则需较高的活化能垒, 表明在单重态下这些氧物种具有较高的稳定性.     

Investigation of surface interactions between volatile chromium species and ceramics

Stainless steels are often used in high temperature (≥500°C) applications such as solid oxide fuel cells (SOFCs), combustion engine exhaust systems, and in power/chemical plant process equipment. At high temperature and in oxidizing conditions, chromium containing oxides, such as chromia, may form protective surface layers on the underlying alloy. Reactive evaporation of chromium, however, may occur from the protective surface layers given these conditions, resulting in the formation of volatile chromium species such as CrO₂(OH)₂. These volatile chromium species may then interact with surrounding materials, potentially resulting in hazardous compound formation, or having detrimental effects on system performance, as in the case of SOFCs. To better understand the interaction of volatile chromium condensation/deposition on material substrates, volatile chromium species were generated from chromia powder at 500°C to 900°C and flowed past coupons of alumina and mica and quartz wool at temperatures ranging from 150°C to 900°C for 24- and 100-hour exposures. The ceramic surfaces were characterized as a function of these exposures using X-ray photoelectron spectroscopy (XPS). Analysis of Cr 2p_3/2 peak positions revealed the influence of temperature, material, and exposure time on the oxidation states of surface chromium compounds and extent of chromium deposition. Potential mechanisms are proposed to help explain the observed trends.     

Bricks and mortar of the epidermal barrier

A specialized tissue type, the keratinizing epithelium, protects terrestrial mammals from water loss and noxious physical, chemical and mechanical insults. This barrier between the body and the environment is constantly maintained by reproduction of inner living epidermal keratinocytes which undergo a process of terminal differentiation and then migrate to the surface as interlocking layers of dead stratum corneum cells. These cells provide the bulwark of mechanical and chemical protection, and together with their intercellular lipid surroundings, confer water-impermeability. Much of this barrier function is provided by the cornified cell envelope (CE), an extremely tough protein/lipid polymer structure formed just below the cytoplasmic membrane and subsequently resides on the exterior of the dead cornified cells. It consists of two parts: a protein envelope and a lipid envelope. The protein envelope is thought to contribute to the biomechanical properties of the CE as a result of cross-linking of specialized CE structural proteins by both disulfide bonds and N(epsilon)-(gamma-glutamyl)lysine isopeptide bonds formed by transglutaminases. Some of the structural proteins involved include involucrin, loricrin, small proline rich proteins, keratin intermediate filaments, elafin, cystatin A, and desmosomal proteins. The lipid envelope is located on the exterior of and covalently attached by ester bonds to the protein envelope and consists of a monomolecular layer of omega-hydroxyceramides. These not only serve of provide a Teflon-like coating to the cell, but also interdigitate with the intercellular lipid lamellae perhaps in a Velcro-like fashion. In fact the CE is a common feature of all stratified squamous epithelia, although its precise composition, structure and barrier function requirements vary widely between epithelia. Recent work has shown that a number of diseases which display defective epidermal barrier function, generically known as ichthyoses, are the result of genetic defects of the synthesis of either CE proteins, the transglutaminase 1 cross-linking enzyme, or defective metabolism of skin lipids.     

Transient UV Raman spectroscopy finds no crossing barrier between the peptide alpha-helix and fully random coil conformation.

Transient UV resonance Raman measurements excited within the amide pi --> pi transitions of a 21 unit alpha-helical peptide has for the first time determined a lower bound for the unfolding rate of the last alpha-helical turn to form a fully random coil peptide. A 3 ns T-jump is generated with 1.9 microm laser pulses, which are absorbed by water. Subsequent 3 ns 204 nm UV pulses excite the amide Raman spectra at delay times between 3 ns and 1 ms, to monitor the peptide conformational evolution. We find approximately 180 ns relaxation times which result in a rate constant of >5 x 10(6) s(-1) for unfolding of the last alpha-helical turn. Our data are inconsistent with slow alpha-helix nuclei melting.