Influences of the Hydrophobicity of the Heme-binding Pocket on the Properties and Functions of Cytochrome b_5 Mutants

IntroductionElectrontransferreactionsarethekeystepsinphoto synthesis ,respirationandmanyotherbiochemicalprocess es.1Cytochromeb5isaredoxproteinexistingwidelyinnature ,whichactsasanelectron carrierduringvariouselectrontransferprocessesinthebiologicalsystem .2Cytochromeb5isamembraneproteinwithmolecularweightofapproximately 16kDa ,ofwhichthehydrophobicC terminaldomainanchorscytochromeb5tothemem brane ,andthehydrophilicN terminaldomaincontainshemeprostheticgroupandexhibitsthebiologicalfunctionsof…     

Influences of the Hydrophobicity of the Heme－binding Pocket on the Properties and Functions of Cytochrome b5 Mutants

The mutation sites of the four mutants F35Y, P40V, V45E and V45Y of cytochrome b5 are located at the edge of the heme-binding pocket. The solvent accessible areas of the “pocket inte-rior“ of the four mutants and the wild-type cytochrome b5 have been calculated based on their crystal structures at high resolu-tion. The change in the hydrophobicity of the heme-binding pocket resulting from the mutation can be quantitatively de-scribed using the difference of the solvent accessible area of the “pocket interior“ of each mutant from that of the wild-type cy-tochrome b5. The influences of the hydrophobicity of the heme-binding pocket on the protein stability and redox potential are discussed.     

A carbon-13 study of relaxation in the mesophases of 5O·7 and the 5CB homologous series

Abstract

Carbon-13 spin-lattice relaxation times of the protonated ring carbons have been measured at 22·6 MHz in the nematic and all four smectic phases of 5O·7 (4-n-pentyloxybenzylidene-4′-n-heptylaniline). Dong has obtained the deuterium spectral densities J ₁ and J ₂ at 15·4MHz for the deuterated aniline ring of 5O·7-d ₄, and has presented and applied a theory in which the spectral densities are expressed in terms of the diffusion constants D∥ and D?. His results are used to calculate ¹³C relaxation times from the spectral densities J ₀, J ₁ and J ₂. The calculated ¹³C spin-lattice relaxation times are then compared with our experimental values to test the theory. The ¹³C spin-lattice relaxation times of all the resolved resonances in the various phases of the first four members of the 5CB homologous series have been published previously. Dong has also published an analysis of 5CB deuterium data, and we use his results for the diffusion constants D∥ and D? to calculate ¹³C relaxation times of the protonated aromatic carbons of 5CB, 6CB, 7CB and 8CB. The ¹³C relaxation times of the unprotonated aromatic carbons of the 5CB series are calculated in the manner of Wittebort et al., but using the spectral density expressions developed by Dong. The calculated ¹³C spin-lattice relaxation times of the 5CB homologous series are then compared with our experimental values to test the theory for the protonated and unprotonated ring carbons.     

Halogenated pyridines 5. Structure of the products of cyclization of chlorine-containingδ-oxonitriles

Cyclization of the nitriles of polychlorinated-oxoacids — products the addition of chloral to acrylonitrile and methacrylonitrile — yielded chlorine-containing tetrahydropyridines. Their structure and some of their chemical properties have been studied.For communication 4, see [8].A. N. Kosygin Moscow State Textile Academy, Moscow 117918. Translated from Khimiya Geterotsiklicheskikh Soedinenii, No. 3, pp. 365–370, March, 1995. Original article submitted December 26, 1994.     

The influence of the nature of the solvent on the crystal structure and the character of formation of hydrogen bonds inN′-(5-nitrofurfurylidene)isonicotinehydrazide

N(5-Nitrofurfurylidene)isonicotinehydrazide (1) was synthesized in the reaction of nicotinic acid hydrazide with 5-nitrofurfurol in anhydrous or aqueous ethanol. Crystals of different shape and color were obtained depending on the conditions of synthesis and the nature of the solvent. As was established by IR spectroscopy, compound1 in the crystalline state forms solvates of various types. An X-ray study of two different crystals, one obtained by recrystallization from methanol (1a), and the other obtained from aqueous acetic acid (1b), was performed. In the crystal structure of1a intermolecular hydrogen bonds (IMHB) of the NH...N(Py) type occur; the crystals1b are built of solvates with one molecule of acetic acid in which the components are bonded by the IMHB (Ac)O-H..N(Py). The solvates are linked in an infinite chain by the amidohydrate IMHB C=O...W...H-N.Translated fromlzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 9, pp. 2263–2268, September, 1996.     

Synthesis of the diazepanone-nucleoside portion of liposidomycins by aldol reaction of the enolate of diazepanone with a nucleoside 5′-aldehyde

The diazepanone-nucleoside part of liposidomycins has been synthesized by the aldol reaction between the enolate of a stereochemically defined diazepanone and a uridine 5′-aldehyde. The configurations of two new stereocenters in the aldol product have been assigned on the basis of the ¹H NMR coupling constants and NOE of its derivative.     

Characterization of a core fragment of the rhesus monkey TRIM5α protein

Background  

Like all tripartite motif (TRIM) proteins, the retroviral restriction factor TRIM5α consists of RING, B-box 2 and coiled-coil domains, with a C-terminal B30.2(SPRY) domain. Although structures have been determined for some individual TRIM domains, the structure of an intact TRIM protein is unknown.     

A Convergent Route for the Synthesis of AF—5

AF-5 was synthesized through a convergent method. The key step was the Robinson annulation using a key intermediate pentyl vinyl ketone.     

Synthesis and Reactivity of the First Stable λ5-Phosphaacetylene

Abstract

The synthesis and reactivity of he P-bis(diisopropylamino) trimethylsilylphosphaacetylene (bp 75–80°C/10^?2) is reported. Addition of trimethylsilyltriflate to this compound leads to a stable methylenephosphonium salt which has been characterized by an X-ray diffraction study.     

Synthesis and Characterization of the Large Pore Molecular Sieves VPI-5 and Si-VPI-5

The large pore molecular sieves VPI-5 and Si VPI-5 were synthesized by using three organic amines (dipropylamine, diisopropylamine and dipentylamine) as the structure-directing agents. Compared with general alumlnophosphate molecular sieves, the synthesis of the molecular sieves of VPI-5 type ls of many unique features. Both VPI-5 and Si-VPI-5 were characterized by XRD, IR, TG-DTA, and MAS-NMR.     

Quantum Chemical Calculations and Experimental Validation of the Photoclick Reaction for Fluorescent Labeling of the 5’ cap of Eukaryotic mRNAs

Bioorthogonal click reactions are powerful tools to specifically label biomolecules in living cells. Considerable progress has been made in site-specific labeling of proteins and glycans in complex biological systems, but equivalent methods for mRNAs are rare. We present a chemo-enzymatic approach to label the 5’ cap of eukaryotic mRNAs using a bioorthogonal photoclick reaction. Herein, the N7-methylated guanosine of the 5’ cap is enzymatically equipped with an allyl group using a variant of the trimethylguanosine synthase 2 from Giardia lamblia (GlaTgs2). To elucidate whether the resulting N²-modified 5’ cap is a suitable dipolarophile for photoclick reactions, we used Kohn–Sham density functional theory (KS-DFT) and calculated the HOMO and LUMO energies of this molecule and nitrile imines. Our in silico studies suggested that combining enzymatic allylation of the cap with subsequent labeling in a photoclick reaction was feasible. This could be experimentally validated. Our approach generates a turn-on fluorophore site-specifically at the 5’ cap and therefore presents an important step towards labeling of eukaryotic mRNAs in a bioorthogonal manner.     

Investigations into the electrooxidation of guanosine-5′-triphosphate at the pyrolytic graphite electrode

The electrochemical oxidation of guanosine-5-triphosphate has been investigated in phosphate-containing electrolytes in the pH range 1.5–10.9 at a pyrolytic graphite electrode by cyclic sweep voltammetry, spectral studies, bulk electrolysis and related techniques. In this pH range, the oxidation occurred in a single well-defined peak (I_a). The peak potential of oxidation peaks (E_p) was found to be dependent on pH, concentration and sweep rate. The kinetics of the UV-absorbing intermediates was followed spectrophotometrically and the decay of the intermediate occurred in a pseudo-first-order reaction. The first-order rate constants for the disappearance of the UV-absorbing intermediate have also been calculated. The products of the electrode reaction were characterized by HPLC and GC/MS. A tentative mechanism for the formation of the products has also been suggested.     

Effects of Calcination Temperature on the Acidity and Catalytic Performances of HZSM-5 Zeolite Catalysts for the Catalytic Cracking of n-Butane

The acidic modulations of a series of HZSM-5 catalysts were successfully made by calcination at different treatment temperatures, i.e. 500, 600, 650, 700 and 800 ℃, respectively. The results indicated that the total acid amounts, their density and the amount of B-type acid of HZSM-5 catalysts rapidly decreased, while the amounts of L-type acid had almost no change and thus the ratio of L/B was obviously enhanced with the increase of calcination temperature (excluding 800 ℃). The catalytic performances of modified HZSM-5 catalysts for the cracking of n-butane were also investigated. The main properties of these catalysts were characterized by means of XRD, N2 adsorption at low temperature, NH3-TPD, FTIR of pyridine adsorption and BET surface area measurements. The results showed that HZSM-5 zeolite pretreated at 800 ℃ had very low catalytic activity for n-butane cracking. In the calcination temperature range of 500-700 ℃, the total selectivity to olefins, propylene and butene were increased with the increase of calcination temperature, while, the selectivity for arene decreased with the calcination temperature.The HZSM-5 zeolite calcined at 700 ℃ produced light olefins with high yield, at the reaction temperature of 650 ℃ the yields of total olefins and ethylene were 52.8% and 29.4%, respectively. Besides, the more important role is that high calcination temperature treatment improved the duration stability of HZSM-5zeolites. The effect of calcination temperature on the physico-chemical properties and catalytic performance of HZSM-5 for cracking of n-butane was explored. It was found that the calcination temperature had large effects on the surface area, crystallinity and acid properties of HZSM-5 catalyst, which further affected the catalytic performance for n-butane cracking.     

Design, Synthesis and Investigation of Bone Affinity of the Conjugates of 5-Fluorouracil and Hydroxybisphosphonate

Bone tumor, as a common disease, is treated by surgical resection, radiotherapy and chemotherapy. Chemotherapy is one of the most important treatment, however, a major problem of chemotherapy is lack of selectivity of cytotoxic drugs. Although many attempts have been made to increase the selectivity of therapeutic drugs for the bone diseases, such as osteoporosis, paget’s, hypercalcemia and bone metastases by conjugating them with targeting carriers1-4, there are still no bone-targeting agent…     

Mechanism of the Low-Temperature Interaction of Hydrogen with α-Oxygen on FeZSM-5 Zeolite

The mechanism of a low-temperature reaction of hydrogen with the radical anion surface oxygen species (-oxygen, ) formed by decomposing N₂O over FeZSM-5 zeolite was studied using kinetic and isotope techniques. It was found that the reaction is of first order with respect to hydrogen and the rate of the reaction is proportional to the concentration of . The activation energy of the reaction, which was measured for ₂ or D₂ over a temperature range from +20 to –;;100°, is equal to 3.2 or 5.3 kcal/mol, respectively. The reaction occurs with a considerable kinetic isotope effect (k /k _D), which varies over the range of 3.4–;;41 depending on the temperature. This fact indicates that the rate-limiting step of the reaction includes the dissociation of the hydrogen molecule. The temperature dependence of the isotope effect gave a value of 2.1 kcal/mol, which is close to the difference between the zero bond energies in the molecules of ₂ and D₂; this fact suggests that a tunnel effect does not significantly contribute to the reaction. The dissociative mechanism is consistent with data obtained by in situ IR spectroscopy. The interaction of hydrogen with -oxygen is accompanied by the formation of new hydroxyl groups (absorption bands at 3635 and 3674 cm^–;;1) at the surface of the zeolite. The identification of these groups was supported by an isotope shift either on the replacement of ₂ by D₂ or on the replacement of ¹⁶ by ¹⁸. The stoichiometric ratio ₂ : is consistent with the previously drawn conclusion on the paired arrangement of -sites.     

Synthesis ofα-substitutedα-amino acids by the alkylation of 5-oxazolinone derivatives

Methods have been developed for the alkylation of 5-oxazolinone derivatives in DMF in the presence of K₂CO₃, KOH, or diisopropylethylamine and a phase transfer catalyst as well as for the preparation of-methyl-phenylalanine,-methylalanine,-methylalanine, and the methyl ester of N-benzoyl--methylalanine. Increasing the initial concentration of the starting 5-oxazolinone in the reaction mixture leads to a sharp drop in the yield of reaction products due to side condensation reactions. The reaction of 2-phenyl-4-benzyl-5- oxazolinone with ethyl iodide gave a dimer namely, 3-(benzoylamino)-3,5-dibenzylpyrrolidine-2,4-dione.Latvian Institute of Organic Chemistry, LV-1006 Riga. Translated from Khimiya Geterotsiklicheskikh Soedinenii, No. 6, pp. 829–833, June, 1994. Original article submitted January 21, 1994.     

The absolute value of the rate constant of the liquid-phase reaction SO 5 −. + Fe(II)

An analytical method for monitoring the Fe²⁺ concentration during liquid-phase sulfite oxidation catalyzed by iron ions is described. The concentration conditions under which the Fe(III)/Fe(II) ratio is uniquely related to the rate constant of the reaction SO ₅ ^?. + Fe²⁺ are found by computer analysis. The experimental and calculated Fe(III)/Fe(II) ratio data are in agreement at $k_{(SO_5^{ - \cdot } + Fe^{2 + } )} = 3.2 \times 10^6 1mol^{ - 1} s^{ - 1} $ . This is one of the three rate constant values known from the literature, which differ by a factor greater than 70.