Identification of oxidation products and free radicals of tryptophan by mass spectrometry

New oxidation products and free radicals derived from tryptophan (Trp) oxidation under Fenton reaction conditions were identified using mass spectrometry. After the oxidation of tryptophan using hydrogen peroxide and iron (II) system (Fenton reaction), mono- and dihydoxy tryptophans and N-formylkynurenine were identified using electrospray mass spectrometry (ES-MS) and ES-MS/MS. Besides these products, new products resulting from the reaction of tryptophan and oxidized tryptophan and 3-methyl indole derivatives were also identified. The 3-methyl indole derivatives resulted, most probably, from the oxidation process and not from in-source processes. A dimer formed by cross-linking between two Trp radicals (Trp-Trp), similar to the previously described tyrosine dimer was observed, as well as the corresponding monohydroxy-dimer (Trp-Trp-OH). Tandem mass spectrometry was used to identify the structures of these new oxidation products. Free radicals derived from tryptophan oxidation under Fenton reaction were detected using as spin trap the DMPO. The free radical species originated during the oxidation reaction formed stable adducts with the spin trap, and these adducts were identified by ES-MS. New adducts of oxidized tryptophan radicals, namely monohydroxy-tryptophan and dihydroxy-Trp dimer radicals, with one and two DMPO spin trap molecules where identified. Tandem mass spectrometry was used to confirm the proposed structure of the observed adducts.     

Polarographic oxidation of some 5,10-dihydrophenazine derivatives

The polarographic anode oxidation of 5-substituted dihydrophenazines in an aprotic medium and an aqueous acetone solution has one-electron or two-electron character. It was shown by means of the electronic and ESR spectra that the intermediates in the anode oxidation of dihydrophenazine and 5-methyldihydrophenazine are cation radicals and that the products of one-electron oxidation of 1,3-dinitro-5-aryl-substituted dihydrophenazines are phenazyl radicals. The final products of anode oxidation are phenazinium salts.Translated from Khimiya Geterotsiklicheskikh Soedinenii, No. 4, pp. 548–551, April, 1976.     

Gas chromatography/mass spectrometric study of non-commercial C-4-substituted 1,4-dihydropyridines and their oxidized derivatives

A gas chromatography/mass spectrometry (GC/MS) method for the qualitative and quantitative determination of the calcium-channel antagonists C-4-substituted 1,4-dihydropyridines, and their corresponding N-ethyl derivatives, is presented. Also, the electrochemical oxidation and the reactivity of the compounds with alkyl radicals derived from 2,2'-azobis-(2-amidinopropane) were monitored by GC/MS. Mass spectral fragmentation patterns for the C-4-substituted 1,4-dihydropy-ridine parent drugs were significantly different from those of their oxidation products, generated either by electrochemical oxidation or by reaction with alkyl radicals. However, for N-ethyl-1,4-dihydropyridine compounds it was not possible to detect the final products (pyridinium salts) using these experimental conditions.     

Thermo- and photooxidation of polyisobutylene. I. Evolutions at temperatures above 50°C

Polyisobutylene films (PIB) were submitted to a thermal oxidation at 100°C and to a photooxidation by exposure to long-wavelength radiations (λ ≥ 300 nm) at 60°C. The modifications of the chemical structure resulting from the oxidation were determined by FT-IR analysis of the polymer films, coupled to chemical treatments that converted specifically the oxidation products. Dissolution of oxidized samples permitted analysis of the polymer by ¹³C- and ¹H-NMR. The structure of the volatile products was determined by mass spectroscopy analysis of the gas phase. Identification of the numerous products formed permitted the proposal of a scheme that accounts for the oxidation of PIB. When the irradiations are carried out at a temperature above 50°C, the depolymerization is favored and the mechanism involves two main routes of oxidation. A direct oxidation starts with the oxidation of radicals obtained by homolysis of the C C bonds on the main chain, and an induced oxidation involves hydrogen abstraction on the methylene and methyl groups by radicals formed by the direct oxidation of the polymer. © 1997 John Wiley & Sons, Inc. J Polym Sci A: Polym Chem 35 : 1689–1701, 1997     

Combination of nitrogen dioxide radicals with 8-oxo-7,8-dihydroguanine and guanine radicals in DNA: oxidation and nitration end-products

The oxidation and nitration reactions in DNA associated with the combination of nitrogen dioxide radicals with 8-oxo-7,8-dihydroguanine (8-oxoGua) and guanine radicals were explored by kinetic laser spectroscopy and mass spectrometry methods. The oxidation/nitration processes were triggered by photoexcitation of 2-aminopurine (2AP) residues site-specifically positioned in the 2'-deoxyribooligonucleotide 5'-d(CC[2AP]TC[X]CTACC) sequences (X = 8-oxoGua or G), by intense 308 nm excimer laser pulses. The photoionization products, 2AP radicals, rapidly oxidize either 8-oxoGua or G residues positioned within the same oligonucleotide but separated by a TC dinucleotide step on the 3'-side of 2AP. The two-photon ionization of the 2AP residue also generates hydrated electrons that are trapped by nitrate anions thus forming nitrogen dioxide radicals. The combination of nitrogen dioxide radicals with the 8-oxoGua and G radicals occurs with similar rate constants (approximately 4.3 x 10(8) M(-1) s(-1)) in both single- and double-stranded DNA. In the case of 8-oxoGua, the major end-products of this bimolecular radical-radical addition are spiroiminodihydantoin lesions, the products of 8-oxoGua oxidation. Oxygen-18 isotope labeling experiments reveal that the O-atom in the spiroiminodihydantoin lesion originates from water molecules, not from nitrogen dioxide radicals. In contrast, combination of nitrogen dioxide and guanine neutral radicals generated under the same conditions results in the formation of the nitro products, 5-guanidino-4-nitroimidazole and 8-nitroguanine adducts. The mechanistic aspects of the oxidation/nitration processes and their biological implications are discussed.     

Oxidation of organic amide ions by dioxygen

The products of base-catalyzed oxidation of secondary aromatic amines were identified by the GC-MS and EPR techniques as nitroxyls, quinone nitrones, quinone imines, and for diarylamines also as the products of C-N bond cleavage-substituted nitrobenzenes, anilines and phenols. It was shown that nitroxyl radicals are the primary paramagnetic products of the reaction and do not form by the interaction of aminyl radicals with dioxygen. A mechanism of the amide ion oxidation through the nonradical addition of dioxygen to the amide ion at the rate-limiting stage is suggested and discussed.The previous report see Ref. 1.Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 10, pp. 1746–1751, October, 1994.     

Radiation-induced oxidation of solid poly(ethylene oxide). II. Mechanism

The mechanism of γ-initiated oxidation of solid poly(ethylene oxide) (PEO) has been investigated, and an overall reaction scheme has been developed which accounts for most of the experimental observations. Data are correlated on the basis that the oxidation process is the sum of two reactions that are first-order and half-order in rate of initiation. They provide evidence that a significant fraction of the interactions of α-alkoxyalkylperoxy radicals is nonterminating at ambient temperature and yield free alkoxy radicals that are very subject to β scission. The unimolecular decomposition of secondary peroxy radicals, which has been invoked previously for the oxidation of PEO in solution, is not needed to explain the products of the oxidation of PEO in the solid phase. Approximately 90% of the total oxygen consumption has been accounted for by the observed products of oxidation. The radiochemical yield for backbone radical formation in irradiated PEO was estimated to be 6.5 ± 1.5.     

Electro-oxidation of o-aminophenol studied by cyclic voltammetry and surface enhanced Raman scattering (SERS)

Cyclic voltammetry and surface enhanced Raman scattering (SERS) spectra were used over a wide pH range to examine the products of o-aminophenol oxidation on a roughened silver electrode. The results of the study indicated that at least two oxidation products are formed at the stationary potential of the electrode. The major product in alkaline and neutral media was identified as 2,2′-dihydroxyazobenzene, a linear dimer formed by N---N coupling of o-aminophenol cation radicals. In acidic solutions the cyclic dimer 3-aminophenoxazone formed by C---N coupling of o-aminophenol cation radicals dominates on the silver electrode.     

Reaction mechanism and modeling study for the oxidation by SO2 of o‐xylene and p‐xylene in Claus process

Claus process, comprising of a furnace and a catalytic unit, is used to produce sulfur from H₂S. The aromatic contaminants (benzene, toluene, and xylenes) in H₂S feed form soot, and clog and deactivate the catalysts. Xylenes are known to be the most damaging ones. Therefore, there is a need to oxidize them in the furnace to enhance catalyst life. This article presents a kinetics study on the oxidation of o‐ and p‐xylene radicals by SO₂ (an oxidant that is already present in the furnace) using density functional theory and a composite method. The mechanism begins with H‐abstraction from xylenes to form xylyl radicals, followed by exothermic addition of SO₂ to them. The breakage of O S bond in the xylyl‐SO₂ adducts leads to the loss of SO molecule, while the remaining O atom on them helps in their oxidation. The isomerization study shows that less‐stable dimethylphenyl radicals have a high tendency to isomerize to resonantly stabilized methylbenzyl radicals. However, methylbenzyl radicals have lower reactivity toward SO₂ than dimethylphenyl radicals. The reaction rate constants were found using transition state theory. The reactor simulations reveal that p‐xylene has lower reactivity toward SO₂ than o‐xylene, and CO, SO, and CHO are the main by‐products of oxidation.     

On the mechanism of hydrogen transfer by nicotinamide coenzymes and some dehydrogenases

The course of the oxidation of 2 ,2-dimethylcyclopropylmethanol and 2 ,2 ,3,3-tetramethylcyclopropylmethanol by horse liver alcohol dehydrogenase and NAD⁺ has been investigated. In neither case were ring opened products detected which, in agreement with previous observations, provides no evidence for the intermediacy of radicals in these reactions. The stability of several substituted cyclopropylalkyl radicals has been investigated by e.s.r. spectroscopy and the results are discussed with respect to cyclopropane-containing probes of the mechanism of oxidation of lactate dehydrogenase.     

Mechanisms of Mn(OAc)3-based oxidative free-radical additions and cyclizations

The mechanistic details of Mn(OAc)₃-based oxidative free-radical additions and cyclizations are reviewed. The mechanisms of electron transfer to generate radicals, electron transfer to convert the radicals to oxidized products, and further oxidation of the products are covered.     

Ignition and oxidation of 1‐hexene/toluene mixtures in a shock tube and a jet‐stirred reactor: Experimental and kinetic modeling study

The oxidation of several binary mixtures 1‐hexene/toluene has been investigated both in a shock tube and in a jet‐stirred reactor (JSR). The self‐ignition behavior of binary mixtures was compared to that of neat hydrocarbons studied under the same conditions. Furthermore, molecular species concentration profiles were measured by probe‐sampling and GC/MS, FID, TCD analyses for the oxidation of the mixtures in a JSR. Experiments were carried out over the temperature range 750–1860 K. Mixtures were examined under two pressures 0.2 and 1 MPa, with 0.1% initial concentration of fuel. The equivalence ratio was varied from 0.5 to 1.5. The experiments were modeled using a detailed chemical kinetic reaction mechanism. The modeling study showed that interactions between hydrocarbons submechanisms were not limited to small reactive radicals. Other types of interactions involving hydrocarbon fragments derived from the oxidation of the fuel components must be considered. These interactions mainly consist of hydrogen abstraction reactions. For example, benzyl radical that is the major radical produced from the oxidation of toluene at high temperature can abstract hydrogen from 1‐hexene and their products such as hexenyl radicals. Similarly, propyl, allyl, and hexenyl radicals that are the major radicals produced during 1‐hexene oxidation at high temperature can abstract hydrogen from toluene. Improved modeling was achieved when such interaction reactions were included in the model. Good agreement between experimental and calculated data was obtained using the proposed detailed chemical kinetic scheme. © 2007 Wiley Periodicals, Inc. Int J Chem Kinet 39: 518–538, 2007     

A theoretical study of the OH-initiated gas-phase oxidation mechanism of β-pinene (C10H16): first generation products

An extensive mechanism for the OH-initiated oxidation of β-pinene up to the first-generation products was derived based on quantum chemical calculations, theoretical kinetics, and structure-activity relationships. The resulting mechanism deviates from earlier explicit mechanisms in several key areas, leading to a different product yield prediction. Under oxidative conditions, the inclusion of ring closure reactions of unsaturated alkoxy radicals brings the predicted nopinone and acetone yields to an agreement with the experimental data. Routes to the formation of other observed products, either speciated or observed as peaks in mass spectrometric studies, are also discussed. In pristine conditions, we predict significant acetone formation following ring closure reactions in alkylperoxy radicals; in addition, we predict some direct OH recycling in subsequent H-migration reactions in alkylperoxy radicals. The uncertainties on the key reactions are discussed. Overall, the OH-initiated oxidation of β-pinene is characterized by the formation of a few main products, and a very large number of products in minor to very small yields.     

HPLC–MS determination of the oxidation products of the reaction between α- and β-pinene and OH radicals

Biogenic non-methane hydrocarbons such as isoprene, alpha-pinene, and beta-pinene, are emitted by forests in very large quantities. To evaluate the role of alpha- and beta-pinene and their contribution to the global production of trace gases and especially aerosol precursors, a study of the oxidation mechanism of alpha- and beta-pinene with hydroxyl radicals must be conducted.The degradation products of both monoterpenes with hydroxyl radicals were identified and quantified in a fast-flow reactor. The products were collected on a liquid-nitrogen trap coated with a 2,4-DNPH solution to which two internal standards (benzaldehyde-2,4-DNPH and tolualdehyde-2,4-DNPH) had been added. The collection method was based on the in situ conversion of aldehyde and/or ketone compounds to their 2,4-dinitrophenylhydrazone derivatives. The derivatives were analyzed by HPLC-MS using APCI(-). TIC chromatograms and mass spectral data for the various oxidation products are presented.For alpha-pinene, pinonaldehyde is the most important degradation product, with smaller amounts of acetone, formaldehyde, campholenealdehyde, and acetaldehyde. For beta-pinene, nopinone and formaldehyde are the most abundant products, of almost equal importance, whereas acetone and acetaldehyde are minor compounds.     

Determination of polymer electrolyte membrane (PEM) degradation products in fuel cell water using electrospray ionization tandem mass spectrometry

Within the scope of research of membrane degradation phenomena during fuel cell operation a reliable analytical procedure for the extraction, detection and quantification of possible membrane oxidation products has been developed. These oxidation products originate from the attack of hydroxyl or peroxyl radicals on the membrane polymer. Such radicals are formed in situ (during fuel cell operation) or ex situ (Fenton test as oxidative stress simulation). The analysis of membrane oxidation products was carried out by electrospray ionization tandem mass spectrometry. Five potential membrane oxidation products (4‐hydroxybenzoic acid (4‐HBA), 4‐hydroxybenzaldehyde (4‐HBAD), 4,4‐biphenol (4,4‐BP), 4‐hydroxybenzenesulfonate (4‐HBS), and 4,4‐sulfonylbiphenol (4,4‐SBP)) were selected based on the molecular structure of the sulfonated polyarylether membrane used. In conjunction with the development of a multiple reaction monitoring (MRM) method, the ionization and fragmentation of the selected compounds were investigated. For 4,4‐BP a molecular ion (M^+?) was observed in the positive ionization mode and used for MRM method development. Reproducible extraction of the model compounds was achieved using a mixed‐mode sorbent material with both weak anion‐exchange and reversed‐phase retention properties. By using the developed analytical procedure, the identities of two membrane degradation products (4‐HBA and 4‐HBAD) were determined in situ and ex situ. In addition to the investigation of membrane degradation phenomena, the combination of extraction on a mixed‐mode sorbent material and tandem mass spectrometric detection is attractive for the analysis of aromatic sulfonic acids, phenolic acids and phenols. Copyright © 2010 John Wiley & Sons, Ltd.     

COMPARATIVE STUDY OF OXIDATION OF NUCLEIC ACID COMPONENTS BY HYDROXYL RADICALS, SINGLET OXYGEN AND SUPEROXIDE ANION RADICALS

Abstract— Superoxide radicals, singlet oxygen and hydroxyl radicals are individually or in combination involved in radiation or photochemical processes and in various enzymatic reactions. The reactivity and the mechanism of reaction of these oxygen species with some biologically significant DNA components were investigated through the characterization of the final oxidation products.
Superoxide radicals appear to be unreactive with purine and pyrimidine 2'-deoxyribonucleosides. However, the autoxidation reaction of 6-hydroxydopamine leads to extensive degradation of thymine through the intermediary of hydroxyl radicals. Chemically and microwave-discharge generated singlet oxygen oxidation is specific to 2'-deoxyguanosine. The main oxidized products of these reactions were also characterized as well as an as yet unidentified nucleoside in the methylene-blue photooxydation of 2-deoxyguanosine. These results, in addition to specific deuterium effect experiments, lend support to the involvment of singlet oxygen (type II mechanism) in the methylene-blue photosentization. No singlet oxygen effect was observed in aqueous irradiated system.     

Free radicals as intermediates in catalytic oxidation of light alkanes: New opportunities

The analysis of catalytic partial oxidation of light alkanes indicates that processes involving this group proceed via the formation and consecutive transformations of free radicals. Depending on the properties of the catalytic system and reaction conditions the same primary radical can give different final products, olefins, oxygenated organic substances and carbon oxides. An approach to design a complex catalytic system for efficient alkane partial oxidation based on separation of zones where free radicals are formed and where they are transformed into desired products is suggested and examples of its implementation are presented.     

Reactions of hydroxyl radicals with polystyrene

The reaction of polystyrene with hydroxyl radicals, generated by the photolysis (λ > 300 nm) of H₂O₂, has been studied at 25° in dichloromethane solution, both under vacuum conditions and in presence of O₂. Spectroscopic analyses suggest the presence of phenols and hydroxymucondialdehydes (when O₂ is present) among the reaction products, indicating that OH addition occurs at the phenyl groups of the polymer. By comparison with initiated oxidation reactions under the same conditions, it is concluded that the OH radicals undergo mainly addition reactions. A mechanism has been produced to account for the products. The significance of OH addition reactions in the oxidation of polystyrene is considered, the OH radicals being produced by hydroperoxide decomposition during oxidation, and the products having been previously identified as containing mucondialdehydes.     

Metal Complex-Catalyzed Epoxidation of Olefins by Dioxygen with Co-Oxidation of Aldehydes. A Mechanistic Study

Mechanistic studies of the oxidation of olefins by dioxygen plus aldehyde in the presence of metal complexes such as metalloporphyrins and metal cyclam complexes have been carried out. Epoxides were the predominant products, with trace amounts of allylic oxidation products. cis-Stilbene was oxidized to a mixture of cis- and trans-stilbene oxides. It is concluded from this study that the principal role of the metal complexes is to aid in the initiation step for the free radical autoxidation of the aldehyde and that acylperoxy radicals generated in the autoxidation reaction (or metal complexes formed by complexation of the acylperoxy radicals) are the active epoxidizing agents.