A facile route to germanium(IV) binaphthoxide complexes: crystal structure of a chiral resolved germanium(IV) binaphthoxide

A method for the facile synthesis of chiral germanium(IV) binaphthoxide complexes from the corresponding binaphthols and an organogermanium trichloride has been developed, which allows these unusual types of compounds to be synthesized in high yields. The crystal structure of one such complex, (S)-[Ge{O2C20H10(SiMe3)2-3,3'}{Cl}{Ph}], has been determined.     

Experimental vibrational spectra of gas-phase tantalum cluster cations

We present gas-phase infrared spectra of tantalum cluster cations containing 6-20 atoms. Infrared multiple photon dissociation of their complexes with argon atoms is used to obtain vibrational spectra in the region between 90 and 305 cm(-1). Many spectra have features in common with the vibrational spectra of the lighter homologs, vanadium and niobium, pointing to a common cluster growth mechanism.     

Crystal structure of germanium(II) dichloride solvated by tetrahydrofuran

The thermally highly unstable tetrahydrofuran solvate of germanium(II) dichloride (GeCl₂ · 2THF) was crystallized, and its crystal structure was determined. It consists of a chain of GeCl₂ units connected by secondary Cl···Ge contacts [3.846(2) Å] in which each Ge atom is coordinated to two molecules of THF. Two weak hydrogen bonds of the C H ··· Cl Ge type in GeCl₂ · 2THF were also detected both with lengths of 2.90(3) Å. © 2005 Wiley Periodicals, Inc. Heteroatom Chem 16:361–363, 2005; Published online in Wiley InterScience ( www.interscience.wiley.com ). DOI 10.1002/hc.20105     

An experimental and theoretical study of the molecular structure and vibrational spectra of iodotrimethylsilane (SiIMe3)

The gas-phase molecular structure of iodotrimethylsilane (ITMS) has been determined from electron diffraction data. Infrared and Raman spectra have been completely assigned. The experimental work is supported by ab initio HF and MP2 calculations for the gas-phase structure determination and DFT(B3LYP) calculations, combined with Pulay's SQM method, for the vibrational spectra data.     

Hydration of ion-biomolecule complexes: ab initio calculations and gas-phase vibrational spectroscopy of K+ (indole)m(H2O)n

In recent years neutral indole(H2O)n clusters have been used to model the hydration of biomolecules containing an indole moiety. Both experimental and theoretical studies of the binary indole...OH2 system show NH...OH sigma hydrogen-bonding. By introducing a cation to the indole...OH2 model, cation...pi and ion...dipole electrostatic interactions are placed in direct competition with conventional indole...OH2 hydrogen-bonding. The effects, arising from a monovalent potassium cation on (indole)m(H2O)n clusters, were investigated using infrared photodissociation spectroscopy in the OH and NH stretching regions. In K+ (indole)1(H2O)(n < or = 4) and K+ (indole)2(H2O)(m < or = 3) clusters, the electrostatic ion...ligand interaction inhibits the formation of an indole NH...OH2 sigma hydrogen-bond. However, indole...H2O pi hydrogen-bonding via the five-membered indole ring is observed with three or more ligands around the ion.     

Specific features of the structure of germanium(IV) complexes with polybasic acids

The specific features revealed in the structure of germanium(IV) compounds with ligands in the form of anions of polybasic acids (monoamine, diamine, and triamine complexones, i.e., hydroxyethylidene-diphosphonic and carboxylic acids) have been considered. The influence of the individuality of specific acids on the structure type (mononuclear, binuclear, trinuclear, hexanuclear, polynuclear), the coordination mode of monodentate ligands and donor atoms of polydentate ligands (terminal, bridging, chelating, chelating-bridging), and variants of the coordination of polydentate ligands, i.e., anions of polybasic acids, with metal atoms (germanium, rare-earth elements, copper, barium), as well as on the dependence of the Ge-O bond length on the individual nature of ligands (OH, H₂O, O(oxo)) and donor atoms of polydentate ligands α- and β-O(carb), O(hydr), O(P)] and their function in the structure (terminal, bridging, chelating, chelating-bridging), has been analyzed using 28 homometallic and heterometallic complexes as an example.     

Molecular conformers in gas-phase ethanol: A temperature study of vibrational overtones

Overtone absorption spectra are reported for ethanol vapor (10150–19900 cm^?1) measured by intracavity photoacoustic spectroscopy. The OH overtones are composed of two sub-bands which are assigned as the transitions of two conformers of the OH bond in the trans or gauche position with respect to the methyl group. From the temperature dependence of the OH overtone intensity we determine the enthalpy difference between the conformers to be 0.7 ± 0.1 kcal/mole.     

The elusive structure of CrCl(2): a combined computational and gas-phase electron-diffraction study

Chromium dichloride poses a challenge to the structural chemist. Its different forms of aggregation and association display all well-known structural distortions induced by vibronic interactions. The monomeric molecule has a Renner-Teller distorted bent geometry, the crystal exhibits strong Jahn-Teller distortion, and the oligomers have slightly distorted four-membered-ring structures due to the pseudo-Jahn-Teller effect. In this paper we report on the low-energy structures of the monomer and its clusters, Cr(2)Cl(4), Cr(3)Cl(6), and Cr(4)Cl(8), from unrestricted Kohn-Sham (broken-symmetry) density functional calculations. CrCl(2) was also investigated at higher level, including coupled-cluster and state-average CASSCF computations. The global minima of the gas-phase clusters consist of two-dimensional, antiferromagnetically coupled chains of CrCl(2) units forming four-membered, doubly bridged Cr(2)Cl(2) rings, closely resembling the solid-state structure of alpha-CrCl(2). Each Cr atom in these chains has spin quantum number S=2. This suggests that the CrCl(2) nucleation starts very early on the structural chain motif found in the solid. There is only a very small change in energy from the antiferromagnetically to the ferromagnetically coupled Cr atoms, which indicates little spin-coupling between the metal centers. There is an approximately constant change in energy, about 50 kcal mol(-1), with every new CrCl(2) unit during cluster formation. Information about the structure of these clusters was used in the re-analysis of high-temperature electron-diffraction data. The vapor at 1170 K contained about 77 % monomeric molecules, 19 % dimers, and a small amount of trimers. Monomeric CrCl(2) was found to be bent with a bond angle of 149(10) degrees, in good agreement with our computations, which resulted in a Renner-Teller distortion of the lowest-energy (5)Pi(g) electronic state into the bent (5)B(2) ground state. The vibrational spectrum of chromium dichloride is discussed and the thermodynamics of cluster formation from 1000-2000 K is examined.     

The singular gas-phase structure of 1-aminocyclopropanecarboxylic acid (Ac3c)

The natural nonproteinogenic α-amino acid 1-aminocyclopropanecarboxylic acid (Ac(3)c) has been vaporized by laser ablation and studied in the gas phase by molecular-beam Fourier transform microwave spectroscopy. Comparison of the experimental rotational and (14)N nuclear quadrupole coupling constants with the values predicted ab initio for these parameters has allowed the unambiguous identification of three Ac(3)c conformers differing in the hydrogen bonding pattern. Two of them resemble those characterized before for the coded aliphatic α-amino acids. Remarkably, a third conformer predicted to be energetically accessible for all of these amino acids but never observed (the so-called "missing conformer") has been found for Ac(3)c, close in energy to the global minimum. This is the first time that such a conformer, stabilized by an N-H···O(H) hydrogen bond, is detected in the rotational spectrum of a gaseous α-amino acid with a nonpolar side chain. The conjugative interaction established between the cyclopropane ring and the adjacent carbonyl group seems to be responsible for the unique conformational properties exhibited by Ac(3)c.     

Fliplike motion in the thalidomide dimer: Conformational analysis of (R)-thalidomide using vibrational circular dichroism spectroscopy

The dynamic fliplike motion in the (R)-thalidomide dimer has been reported for the first time. The vibrational circular dichroism (VCD) spectrum of (R)-thalidomide in DMSO-d6 indicates the characteristic nu(CO) bands with opposite signs and reflects the structural property of the equatorial configuration of the phthalimide ring. On the other hand, the VCD spectrum of (R)-thalidomide in CDCl3 exhibits a different pattern of nu(CO) bands and suggests the fliplike motion in dimer forms. This novel insight for the dimer forms would be helpful for the understanding of the structure-activity relationship for thalidomide.     

Theoretical study on gas-phase conformations and vibrational assignment of methylphenidate

The molecular geometry, the normal mode frequencies and corresponding vibrational assignments of methylphenidate in the ground state were performed by DFT/B3LYP level of theory using the 6-311++G(d, p) basis set. Harmonic vibrational frequencies were calculated. The complete assignments were performed on the basis of the total energy distribution (TED) of the vibrational modes, calculated with scaled quantum mechanics (SQM) method. The conformational stabilities and optimized geometrical parameters have been carried out with density functional theory with 6-311++G(d, p) basic set by the DFT/B3LYP method. The frequency calculations have been performed with DFT to study the vibrational properties and their dependence on the molecular conformation.     

Vibrational spectra and vibrational states of simple gas-phase hydrogen-bonded dimers

The article aims to outline the growth of evidence and ideas about infrared band broadening for simple, gaseous, moderately strong, hydrogen bonded dimers B…HA, to draw attention to areas in need of further development and to collect together experimental information available at the present time about vibrational states associated with such dimers. The band associated with the modified HA stretching mode, ν_s, is observed for several dimers not only to be broad, but to have sub-band structure, which is satisfactorily interpreted as arising from combination bands of ν_s with the low frequency stretch-mode ν_σ, giving a progression ν_s ± nν_σ as a result of strong anharmonic coupling. For weaker dimers with lower values of ν_σ the sub-band structure is less evident, and may appear only as shoulders, while for still weaker dimers, the sub-bands may be merged into a featureless broad band. A major factor contributing to the breadth of the individual sub-bands in the band structure is the presence of hot-bands, especially a long series based on successive excited states of the low-frequency bending mode ν_β. A link is indicated with the interpretation of band-broadening for moderately strong hydrogen-bonded complexes in the liquid state. The anharmonic coupling of ν_s and ν_σ is again a central feature but there is a new factor, namely the coupling of ν_σ through a fluctuating potential with the surroundings, which has the result that the ν_s mode rapidly loses phase coherence resulting in a broad structureless band.     

The molecular structure and pseudorotational motion of 1,1-difluorosilacyclopetane as determined by gas-phase electron diffraction

The structure of 1,1-difluorosilacyclopentane has been studied by gas-phase electron diffraction. The molecule is found to have a barrier of pseudorotion of 2.25(90) kcal mol⁻¹. The potential function has minimum at the twist form (C₂) symmetry and maxima at the envelope forms. The major bond distances (itr)_g) and valence angles obtained from the least-squares refinements with error estimates are as follow: r(C---H) = 1.128(7) A, r(C---C)_av = 1.553(15) A, r(Si---F) = 1.582(6) A, r(Si---C) = 1.853(3) A, (CSiF) = 113.4′(3), CCC = 106°(1), and Tau(C1C2C3C4) = 56.0°(32).     

The preparation,properties and gas-phase molecular structure of difluoro(germylthio)phosphine

Difluoro(germylthio)phosphine, PF₂(SGeH₃), has been prepared by the reaction of S(PF₂)₂ with GeH₃Cl, and has been characterised by i.r.,Raman, n.m.r. and mass spectroscopy. Cleavage reactions with Cl₂ and HBr, donor reactions of the phosphorus atom and exchange reactions with platinum complexes have been studied. The molecular structure of PF₂(SGeH₃) in the gas phase has been determined by electron diffraction. Principal parameters (r _a) are:r(Ge–S) 225.6(4)pm;r(P–S) 211.5(8)pm;r(P–F) 159.0(9)pm; <(GeSP) 99.0(6)° <(SPF) 99.9(4)° <(FPF) 97.0(10)°. The conformation adopted is such that there are short non-bonded F...H contacts, with the PF₂ group twisted 18° from the position in which the FPF angle bisector eclipses the Ge–S bond.

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Difluor(germylthio)phosphin. Darstellung, Eigenschaften und Molekülstruktur in der Gasphase

Zusammenfassung PF₂(SGeH₃) wurde über die Reaktion von S(PF₂)₂ mit GeH₃Cl dargestellt und mittels IR,Raman, NMR and MS charakterisiert. Es wurden Spaltungs-reaktionen mit Cl₂ und HBr, Donor-Reaktionen des Phosphor und Austausch-reaktionen mit Platinkomplexen untersucht. Die Molekülstruktur von PF₂(SGeH₃) in der Gasphase wurde mittels Elektronendiffraktion bestimmt. Die Hauptparameter (r _a) sind:r(Ge–S) 225,6(4)pm;r(P–S) 211,5(8)pm;r(P–F) 159,0(9)pm; <(GeSP) 99,0(6)° <(SPF) 99,9(4)° <(FPF) 97,0(10)°.