Cyclo[n]pyrroles: size and site-specific binding to G-quadruplexes

Inhibiting the enzyme telomerase by stabilizing the G-quadruplex has potential in anticancer drug design. Diprotonated cyclo[n]pyrroles represent a set of expanded porphyrin analogues with structures similar to that of telomestatin, a natural product known to bind to and stabilize G-quadruplexes. As a first step toward testing whether cyclo[n]pyrroles display a similar function, a series of diprotonated cyclo[n]pyrroles (where n = 6, 7, and 8) was each added to the human telomere repeat sequence d(T(2)AG(3))(4) and examined with mass spectrometry, ion mobility, and molecular dynamics calculations. Nano-ESI-MS indicated that the smaller the cyclo[n]pyrrole, the more strongly it binds to the telomeric sequence. It was also found that cyclo[6]pyrrole bound to d(T(2)AG(3))(4) better than octaethylporphyrin, a finding rationalized by cyclo[6]pyrrole having a 2+ charge, while octaethylporphyrin bears no charge. Ion mobility measurements were used to measure the collision cross section of each d(T(2)AG(3))(4)/cyclo[n]pyrrole complex. Only one peak was observed in the arrival time distributions for all complexes, and the experimental cross sections indicated that only structures with d(T(2)AG(3))(4) in an antiparallel G-quadruplex arrangement and each cyclo[n]pyrrole externally stacked below the G-quartets occur under these experimental conditions. When the cyclo[n]pyrroles were intercalated or nonspecifically bound to the quadruplex, or if conformations different than antiparallel were considered for d(T(2)AG(3))(4), the theoretical cross sections did not match experiment. On this basis, it is inferred that (1) external stacking represents the dominant binding mode for the interaction of cyclo[n]pyrroles with d(T(2)AG(3))(4) and (2) the overall size and charge of the cyclo[n]pyrroles play important roles in defining the binding strength.     

Redox behavior of cyclo[6]pyrrole in the formation of a uranyl complex

A uranyl complex, the first metal complex to be formed from the cyclo[n]pyrrole series of expanded porphyrins, is formed when cyclo[6]pyrrole is treated with the uranyl cation under aerobic conditions. Spectroscopic, spectroelectrochemical, and electron spin resonance data of this species are consistent with the ligand in the complex being oxidized to an antiaromatic form.     

Nonlinear optical properties and excited-state dynamics of highly symmetric expanded porphyrins

A strong correlation among calculated Nucleus-Independent Chemical Shift (NICS) values, molecular planarity, and the observed two-photon absorption (TPA) values was found for a series of closely matched expanded porphyrins. The expanded porphyrins in question consisted of [26]hexaphyrin, [28]hexaphyrin, rubyrin, amethyrin, cyclo[6]pyrrole, cyclo[7]pyrrole, and cyclo[8]pyrrole containing 22, 24, 26, 28, and 30 pi-electrons. Two of the systems, [28]hexaphyrin and amethyrin, were considered to be antiaromatic as judged from a simple application of Hückel's [4n + 2] rule. These systems displayed positive NICS(0) values (+43.5 and +17.1 ppm, respectively) and gave rise to TPA values of 2600 and 3100 GM, respectively. By contrast, a set of congeners containing 22, 26, and 30 pi-electrons (cyclo[n]pyrrole, n = 6, 7, and 8, respectively) were characterized by a linear correlation between the NICS and TPA values. In the case of the oligopyrrolic macrocycles containing 26 pi-electron systems, a further correlation between the molecular structure and various markers associated with aromaticity was seen. In particular, a decrease in the excited state lifetimes and an increase in the TPA values were seen as the flexibility of the systems increased. Based on the findings presented here, it is proposed that various readily measurable optical properties, including the two-photon absorption cross-section, can provide a quantitative experimental measure of aromaticity in macrocyclic pi-conjugated systems.     

Formation and properties of cyclo[6]pyrrole and cyclo[7]pyrrole

Oxidative coupling of a tetraalkylbipyrrole under FeIII-mediated coupling conditions in the presence of HCl results in a mixture of cyclo[6]- and cyclo[7]pyrroles, as well as the known cyclo[8]pyrrole. This "matched set" of heteroannulenes was analyzed by spectroscopic, electrochemical, and X-ray diffraction methods.     

Perrhenate and pertechnetate anion recognition properties of cyclo[8]pyrrole

Cyclo[8]pyrrole, an octapyrrolic expanded porphyrin with no meso-linking atoms, was found to interact with a series of anions in the solid state and in a chloroform solution. The anion selectivities have been determined relative to a structurally characterised salt, H₂cyclo[8]pyrrole²⁺·I^? ·I^3 ? , via counter anion exchange. Although cyclo[8]pyrrole demonstrates a general selectivity for sulfate, it interacts well with both the pertechnetate and perrhenate anions. Moreover, it has been shown to act as a phase-transfer catalyst facilitating the extraction of pertechnetate from an aqueous to an organic phase in the presence of sulfate.     

Acenaphthylene‐Fused Cyclo[8]pyrroles with Intense Near‐IR‐Region Absorption Bands

An acenaphthylene‐fused cyclo[8]pyrrole was synthesized by using an oxidative coupling reaction of the corresponding 2,2′‐bipyrrole. Two conformational isomers 1 a and 1 b were isolated, and their molecular structures were elucidated by X‐ray crystallographic studies. The less‐polar and lower‐symmetry 1 b isomer can be converted into the 1 a isomer through a thermal ring flip. Application of the perimeter model developed by Michl to magnetic circular dichroism spectroscopic data and theoretical calculations demonstrate that there is a marked redshift of the near‐IR absorption maxima relative to cyclo[8]isoindole because there is a significant stabilization of the LUMO due to the differing effects of a fused ring expansion with acenaphthylene and benzene moieties on the frontier π molecular orbitals.     

High-performance field-effect transistors based on Langmuir-Blodgett films of cyclo[8]pyrrole

We demonstrate the field-effect transistors (FETs) made of cyclo[8]pyrrole thin films prepared by the Langmuir-Blodgett (LB) method. The cyclo[8]pyrrole molecule possesses a 30-pi-electron system and narrower highest-occupied molecular orbital-lowest-unoccupied molecular orbital energy gap (0.63 eV), forms a stable, reproducible monolayer at the air-water interface, and transfers onto a substrate with a nearly unity transfer ratio and face-to-face configuration due to its strong pi-pi interaction. The LB films are uniform characterized by atomic force microscopy and in ordered form confirmed by X-ray diffraction. The FET exhibited high performances with one of the highest hole mobilities (0.68 cm2 V(-1) s(-1)) for thin-film transistors and a high on/off ratio, implying a promising material in the FET family.     

"Umpolung" photoinduced charge separation in an anion-bound supramolecular complex

A new supramolecular system, consisting of an expanded porphyrin, cyclo[8]pyrrole (C8) and a pyrene carboxylate (Py) is capable not only of electron transfer upon photoexcitation, but results in "umpolung" or a reversal of the predicted charge-separation behavior in that the higher energy radical ion pair, C8.+-Py.- (2.58 eV) is formed as opposed to C8.--Py.+ (1.31 eV). This observation is rationalized in terms of the latter radical ion pair, C8.--Py.+ being in the Marcus inverted region. Transient absorption spectral studies reveal a charge-separated lifetime of 300 micros, which decays to the triplet state of cyclo[8]pyrrole, also an exceedingly long-lived species. The novel features of this noncovalent dyad highlight the potential utility of anion binding in the construction of supramolecular electron transfer systems.     

Electrochemical synthesis of cyclo[8]pyrrole

The utility of an electrochemical oxidative strategy in the synthesis of expanded porphyrins is demonstrated by the preparation of cyclo[8]pyrrole in high yield via a bipyrrole C(2)-C(2)' coupling process.     

Electronic structure, spectra, and magnetic circular dichroism of cyclohexa-, cyclohepta-, and cyclooctapyrrole

Three recently obtained expanded porphyrins represent nice examples of compounds for which the electronic and spectral properties can be predicted from symmetry considerations alone. Perimeter-model-based theoretical analysis of the electronic structure of doubly protonated cyclo[6], cyclo[7], and cyclo[8]pyrrole leads to the anticipation of qualitatively the same electronic absorption and magnetic circular dichroism patterns for all three compounds. These predictions are fully confirmed by experiments, as well as DFT and INDO/S calculations. Due to a characteristic pattern of frontier molecular orbitals, a degenerate HOMO and a strongly split LUMO pair, the three cyclopyrroles show comparable absorption intensity in the Q and Soret regions. Magnetic circular dichroism spectra reveal both A and B Faraday terms, of which the signs and magnitudes are in remarkably good agreement with theoretical expectations. The values of the magnetic moments of the two lowest degenerate excited states have also been obtained.     

Achieving Adaptive Aromaticity in Cyclo[10]carbon by Screening Cyclo[n]carbon (n=8−24)

Discovery of species with adaptive aromaticity (being aromatic in both the lowest singlet and triplet states) is particularly challenging as cyclic species are generally aromatic either in the ground state or in the excited state only, according to Hückel's and Baird's rules. Inspired by the recent realization of cyclo[18]carbon, here we demonstrate that cyclo[10]carbon possesses adaptive aromaticity by screening cyclo[n]carbon (n=8?24), which is supported by nucleus‐independent chemical shift (NICS), anisotropy of the current‐induced density (ACID), π contribution of electron localization function (ELF_π) and electron density of delocalized bonds (EDDB) analyses. Further study reveals that the lowest triplet state of cyclo[10]carbon is formed by in‐plane ππ* excitation. Thus, the major contribution to the aromaticity from out‐of‐plane π molecular orbitals does not change significantly in the lowest singlet state. Our findings highlight a crucial role of out‐of‐plane π orbitals in maintaining aromaticity for both the lowest singlet and triplet states as well as the aromaticity dependence on the number of the carbon in cyclo[n]carbon.     

Unconventional Kondo effect in redox active single organic macrocyclic transistors

Cyclo[6]- and cyclo[8]pyrrole, two aromatic expanded porphyrins, were studied in a single-molecule transistor (SMT) setup. The analyses of these compounds allowed us to observe an uncommon absence of an even-odd effect in the Kondo resonance in discrete, metal-free organic macrocyclic compounds. The findings from the SMT measurements of these cyclopyrroles were in accord with those from cyclic voltammetry (CV) studies and theoretical analyses. These findings provide support for the notion that SMT measurements could be useful as a tool for the characterization of similar types of aromatic macrocyclic compounds.     

Anion binding studies of fluorinated expanded calixpyrroles

The anion binding properties of fluorinated calix[n]pyrroles (n = 4-6) in aprotic solvents (acetonitrile and DMSO) and modified reaction conditions allowing for the synthesis and isolation of the hitherto missing dodecafluorocalix[6]pyrrole from the condensation of 3,4-difluoro-1H-pyrrole and acetone are described. In acetonitrile solution containing 2% water, the association constants for the 1:1 binding interaction between octafluorocalix[4]pyrrole and chloride anion obtained with isothermal titration calorimetry (ITC) and (1)H NMR titration methods were found to match reasonably well. As compared to its nonfluorinated congener, octafluorocalix[4]pyrrole was found to display enhanced binding affinities for several representative anions in pure acetonitrile as judged from ITC analyses. Similar analyses of the fluorinated calix[n]pyrroles revealed an increase in the relative affinity for bromide over chloride with increasing macrocycle size, as manifest in a decrease in the binding ratio K(a(Cl))/K(a(Br)). Anion binding studies in the solid state, involving single-crystal X-ray diffraction analyses of the chloride and acetate anion complexes of octafluorocalix[4]pyrrole and decafluorocalix[5]pyrrole, respectively, confirmed the expected hydrogen bond interactions between the pyrrolic NH protons and the bound anions.     

Tri- and pentacalix[4]pyrroles: synthesis, characterization and their use in the extraction of halide salts

Calixpyrrole-based oligomeric compounds were synthesized by "click chemistry" from the corresponding alkyne- and azide-functionalized calix[4]pyrroles. Calix[4]pyrrole 3, possessing an alkyne functional group, was prepared through a mixed condensation of pyrrole with acetone and but-3-ynyl 4-oxopentanoate. Another alkyne-group-containing calix[4]pyrrole 5 was obtained by treatment of 4'-hydroxyphenyl-functionalized calixpyrrole 4 with propargyl bromide. Tetrakis(azidopentyl)-functionalized calix[4]pyrrole 7 was synthesized by reacting NaN(3) with tetrabromopentyltetraethylcalix[4]pyrrole 6, which was prepared through a condensation reaction of pyrrole and 7-bromohept-2-one. Oligomeric calixpyrrole compounds were found to be capable of extracting tetrabutylammonium chloride and fluoride salts from aqueous media. Extraction abilities of the oligomeric compounds were monitored by NMR and UV/Vis spectroscopy and thermogravimetric analysis.     

Cyclo[m]pyridine[n]pyrroles: hybrid macrocycles that display expanded π-conjugation upon protonation

Novel hybrid cyclo[m]pyridine[n]pyrroles have been synthesized using Suzuki coupling. Their NMR and optical spectroscopic features and solid state structural parameters provide support for the proposal that these species are best described as locally aromatic compounds devoid of long-range intersubunit conjugation. However, an extension of the π-conjugation in the macrocycles can be realized through protonation, as inferred from optical spectroscopic and X-ray diffraction-based structural studies.     

Vibrational Spectra and Molecular Vibrational Behaviors of All-Carboatomic Rings,cyclo[18]carbon and Its Analogues

The vibrational spectra of cyclo[18]carbon and its analogues, cyclo[2n]carbon (n=3 to 15), were carefully simulated and characterized. The in-plane C−C stretching vibrations shows strong rigidity, while out-of-plane motions seem to be extremely flexible. The solvation effect can enhance signal strengths of the vibrational spectra, but does not evidently change the shape of the spectral curves. The infrared and Raman spectra of cyclo[2n]carbons are quite sensitive to ring size in the range of n=3 to 7, while the size only modestly affects peak positions and strengths for larger rings. Molecular dynamic trajectories show that the fluctuation period of the skeleton of cyclo[18]carbon is basically constant at different temperatures, and they are all about 300 fs. With increase of simulation temperature, the ring distortion due to thermal motion is notable and becomes much stronger. However, neither ring breaking nor isomerization in cyclo[18]carbon is observed during the simulations untill 298.15 K.     

Expanded radialenes with bicyclo[4.3.1]decatriene units: new precursors to cyclo[n]carbons

A new method for the formation of conjugated polyynes has been developed based on both the rearrangement of vinylidenes to alkynes and the [2+1] cheletropic fragmentation of dialkynylmethylenebicyclo[4.3.1]deca-1,3,5-triene derivatives. A model study of the photolysis of simple dialkynylmethylenebicyclo[4.3.1]deca-1,3,5-trienes resulted in cheletropic fragmentation followed by 1,2-migration to give the corresponding linear polyynes, although undesired isomerization to methylenebicyclo[5.3.0]triene derivatives took place concurrently. Expanded [3]-, [4]-, [5]-, and [6]radialene derivatives with exocyclic bicyclo[4.3.1]decatriene units were prepared by oxidative coupling of the monomeric units as precursors to the corresponding cyclo[n]carbons, monocyclic forms of carbon clusters. The spectroscopic properties of the expanded radialenes were investigated in connection with cross conjugation of the core pi system and with its perturbation by the extraannular bicyclic pi system. In negative-mode laser-desorption time-of-flight (LD-TOF) mass spectra, the expanded radialenes exhibited peaks due to the corresponding cyclo[n]carbon anions (n = 18, 24, 30, and 36) formed by the stepwise loss of the aromatic indane fragments.     

Transport of solutes through calix[4]pyrrole-containing cellulose acetate films

Films of cellulose acetate containing different concentrations of meso-octamethyl-porphyrinogen (calix[4]pyrrole) were prepared and characterized using UV-vis and FTIR spectroscopy, DSC and SEM. Incorporation of calix[4]pyrrole into cellulose acetate leads to a decrease in the degree of hydrophilicity of the polymeric matrix. However, a slight increase in the percentage of water uptake of the polymer is found with an increase of the initial amount of calix[4]pyrrole in the composite composition. This effect can be related to the plasticizing effect that the calix[4]pyrrole provokes in the cellulose acetate. A comparative study of transport parameters of oxygen and some non-associated electrolytes (sodium, copper(II) and nickel chlorides) was carried out. The diffusion coefficients of molecular oxygen through cellulose acetate films decrease with an increase of the concentration of calix[4]pyrrole in the composite films. The transport (diffusion and permeation) of the above mentioned electrolytes through a set of composite films shows a decrease of permeability and diffusion coefficients with an increase of calix[4]pyrrole concentration. Such behaviour is typical of systems where interactions between the polymer and diffusing species occur. However, from the analysis of the distribution coefficient, it was found that those interactions are only dependent on the calix[4]pyrrole content for 2:1 electrolytes.     

Regioselective synthesis of 2,3,4- or 2,3,5-trisubstituted pyrroles via [3,3] or [1,3] rearrangements of O-vinyl oximes

The regioselective synthesis of 2,3,4- or 2,3,5-trisubstituted pyrroles has been achieved via [3,3] and [1,3] sigmatropic rearrangements of O-vinyl oximes, respectively. Iridium-catalyzed isomerization of easily prepared O-allyl oximes enables rapid access to O-vinyl oximes. The regioselectivity of pyrrole formation can be controlled by either the identity of the α-substituent or through the addition of an amine base. When enolization is favored, a [3,3] rearrangement followed by a Paal-Knorr cyclization provides a 2,3,4-trisubstituted pyrrole; when enolization is disfavored, a [1,3] rearrangement occurs prior to enolization to produce a 2,3,5-trisubstituted pyrrole after cyclization. Optimization and scope of the O-allyl oxime isomerization and subsequent pyrrole formation are discussed and mechanistic pathways are proposed. Conditions are provided for selecting either the [3,3] rearrangement or the [1,3] rearrangement product with β-ester O-allyl oxime substrates.     

Stopped-flow kinetic analysis of the interaction of cyclo[8]pyrrole with anions

The on and off rates corresponding to the binding of two test anions (acetate, AcO(-), and dihydrogen phosphate, H(2)PO(4)(-), studied as their tetrabutylammonium salts) to diprotonated cyclo[8]pyrrole have been determined in CH(3)CN using stopped-flow analyses carried out at various temperatures. For dihydrogen phosphate, this afforded the activation enthalpies and entropies associated with both off and on processes. The different dynamic behavior seen for these test anions underscores the utility of kinetic analyses as a possible new tool for the advanced characterization of anion receptors.