Ionizing properties of complexes with strong symmetrical hydrogen bonds in acid solutions in aprotic solvents

The acidity functions H₀ of solutions of trifluoroacetic acid (TFA) in DMF and methanesulfonic acid (MSA) in 2-pyrrolidone over an acid (HA) concentration range of 0–100% and of H₂SO₄ solutions in 2-pyrrolidone (66.7–100 mol % HA) at 25°C were determined using the indicator method. Data were obtained on the relative ionizing powers of the quasi-ion pairs S· · · H· · ·A (S is a solvent molecule) formed by DMF with acids (HCl, MSA, and TFA) and by MSA with DMF and 2-pyrrolidone. The effects of the acid anion (with MSA and H₂SO₄ solutions in 2-pyrrolidone acting as examples) and the counterion SH⁺ (with MSA solutions in DMF and 2-pyrrolidone acting as examples) on the ionizing power of (Ä · · ·H· · ·A)^– ions with strong symmetrical H-bonds were studied. It was found that, under comparable conditions, the replacement of a 2-pyrrolidone molecule by a DMF molecule in the SH⁺ cation insignificantly decreased the acidity of solution, whereas the (Ä· · ·H· · ·A)^– ions in H₂SO₄ solutions exhibited a much higher ionizing power than that of structurally similar anions in MSA solutions.Translated from Kinetika i Kataliz, Vol. 46, No. 1, 2005, pp. 44–49.Original Russian Text Copyright © 2005 by Kislina, Sysoeva, Librovich.     

Integrated intensity of continuous absorption in infrared spectra of complexes with medium-strong and strong hydrogen bonds

A simple, nongraphical and reproducible method of separation of the complex absorption due to strong hydrogen bonds from that due to the skeleton is proposed. The method has been tested on 17 complexes of pyridine N-oxide, triphenylphosphine oxide and DMSO-d₆ with dichloroacetic acid in dry dichloromethane and acetonitrile. The integrated intensity (A_CPA) and the centre of gravity (mathtype1) of complex absorption due to protonic vibration were measured and correlated with pK_a values of bases and chemical shifts of the hydrogen-bonded protons (δ), and discussed with respect to hydrogen bond strength variations. TheA^CPA values vary from 17.5 to 46 x 10⁴ cm mmol^-1 and were reproducible to within ± 1 x 10⁴ cm mmol⁻¹ (5-15 %). A nonlinear correlation between A_CPA and (mathtype2) has been found in wide region of data; (mathtype3) varies from 500 to 2300 cm⁻¹. A gradual proton transfer has been considered from the acid to pyridine N-oxides via strengthening intermolecular H-bonds, AH⋯ON, and further via weakening interionic H-bonds, A⁻⋯ HON⁺. The obtained correlations suggest that variations of hydrogen bond strength caused similar changes of A_CPA and (mathtype4) both in molecular (A–H⋯B) and ionic (A⁻⋯H–B⁺) species.     

Kinetics of hydrogen isotope exchange in molecules with strong intramolecular hydrogen bonds

Rate constants and activation energies of hydrogen exchange in solution between methanol and molecules with intramolecular H-bonds have been measured. It has been established that the rate-determining step is the dissociation of this bond.

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H-. , .

     

Vibrational study of strong CH · middot; X hydrogen bonds in solid complexes of boron decachlorocarboranes

Solid complexes of boron decachloro-o-carborane and boron decachloro-m-carborane (B₁₀Cl₁₀C₂H₂) with some oxygen and nitrogen bases have been investigated by infrared and Raman spectroscopy. Complexes containing CH · · O hydrogen bonds are characterized by a relative CH stretching frequency shift up to 12% and a halfwidth of the νCH band up to 220 cm^?1. CH · · N hydrogen bonds, with trimethylamine for example, are stronger with a relative shift of about 18% and $\text{ν}{}_{\mathrm{<mtext>1</mtext><mtext>2</mtext>}}$ of about 500 cm^?1. Triethylamine complexes, however, form a NH⁺ · · C^? proton transfer hydrogen bond while pyridine can give either CH · · N or C^? · · ⁺HN hydrogen-bonded adducts depending on the solvent and temperature. The CH · · N?c^? · · ⁺HN equilibrium appears to be shifted towards ion-pair formation at considerably smaller enthalpy values compared to the OH · · N?O^? · · ⁺HN system. CH and NH stretching frequencies are correlated with the acidity of the donor and the basicity of acceptor molecules.     

Phonon driven proton transfer in crystals with short strong hydrogen bonds

Recent work on understanding why protons migrate with increasing temperature in short, strong hydrogen bonds is extended here to three more organic, crystalline systems. Inelastic neutron scattering and density functional theory based simulations are used to investigate structure, vibrations, and dynamics of these systems as functions of temperature. The mechanism determined in a previous work on urea phosphoric acid of low frequency vibrations stabilizing average crystal structures, in which the potential energy well of the hydrogen bond has its minimum shifted towards the center of the bond, is found to be valid here. The new feature of the N-H...O hydrogen bonds studied in this work is that the proton is transferred from the donor atom to the acceptor atom. Molecular dynamics simulations show that in an intermediate temperature regime, in which the proton is not completely transferred, the proton is bistable, jumping from one side of the hydrogen bond to the other. In the case of 3,5-pyridine dicarboxylic acid, which has been studied in most detail, specific phonons are identified, which influence the potential energy surface of the proton in the short, strong hydrogen bond.     

Infrared induced conformational change in the two strong hydrogen bonded complexes 2-1 between dimethyl ether and hydrogen iodide in nitrogen matrix

The IR spectra of the complexes between dimethylether (DME) and hydrogen iodide in nitrogen matrices were reinvestigated with careful attention to the temperature and IR radiation effects upon the higher aggregates. Irradiation using a broad band IR source was found weakly active leading to a nearly stationary population of the two (DME)₂ H⁺I⁻ species. Irradiation with CO₂ laser lines induced a conformational interconversion of both aggregates to non-hydrogen-bonded forms. The breaking of the strong hydrogen bond was principally governed by irradiation in the range 2600-1500 cm⁻¹ corresponding to the δ CH₃ region whereas the reverse process was observed by increasing temperature above 27 K under the annealing limit or irradiation below 1100 cm⁻¹. No accurate evidence was found for the occurrence of photochemical proton transfer between the centrosymmetrical and asymmetrical cations characterizing the two investigated complexes.     

Solution and solid-state models of peptide CH...O hydrogen bonds

Fumaramide derivatives were analyzed in solution by (1)H NMR spectroscopy and in the solid state by X-ray crystallography in order to characterize the formation of CH...O interactions under each condition and to thereby serve as models for these interactions in peptide and protein structure. Solutions of fumaramides at 10 mM in CDCl(3) were titrated with DMSO-d(6), resulting in chemical shifts that moved downfield for the CH groups thought to participate in CH...O=S(CD(3))(2) hydrogen bonds concurrent with NH...O=S(CD(3))(2) hydrogen bonding. In this model, nonparticipating CH groups under the same conditions showed no significant change in chemical shifts between 0.0 and 1.0 M DMSO-d(6) and then moved upfield at higher DMSO-d(6) concentrations. At concentrations above 1.0 M DMSO-d(6), the directed CH...O=S(CD(3))(2) hydrogen bonds provide protection from random DMSO-d(6) contact and prevent the chemical shifts for participating CH groups from moving upfield beyond the original value observed in CDCl(3). X-ray crystal structures identified CH...O=C hydrogen bonds alongside intermolecular NH...O=C hydrogen bonding, a result that supports the solution (1)H NMR spectroscopy results. The solution and solid-state data therefore both provide evidence for the presence of CH...O hydrogen bonds formed concurrent with NH...O hydrogen bonding in these structures. The CH...O=C hydrogen bonds in the X-ray crystal structures are similar to those described for antiparallel beta-sheet structure observed in protein X-ray crystal structures.     

Competition of hydrogen bonds and halogen bonds in complexes of hypohalous acids with nitrogenated bases

A theoretical study of the complexes formed by hypohalous acids (HOX, X = F, Cl, Br, I, and At) with three nitrogenated bases (NH 3, N 2, and NCH) has been carried out by means of ab initio methods, up to MP2/aug-cc-pVTZ computational method. In general, two minima complexes are found, one with an OH...N hydrogen bond and the other one with a X...N halogen bond. While the first one is more stable for the smallest halogen derivatives, the two complexes present similar stabilities for the iodine case and the halogen-bonded structure is the most stable one for the hypoastatous acid complexes.     

Variation of atomic charges on proton transfer in strong hydrogen bonds: the case of anionic and neutral imidazole-acetate complexes

The variation of atomic charges upon proton transfer in hydrogen bonding complexes of 4-methylimidazole, in both neutral and protonated cationic forms, and acetate anion, is investigated. These complexes model the histidine (neutral and protonated)-aspartate pair present in active sites of proteases where strong N--H...O hydrogen bonds are formed. Three procedures (Merz-Kollman scheme, Natural Population Analysis, and Atoms in Molecules Method) are used to compute atomic charges and explore their variation upon H-transfer in the gas phase and in the presence of two continuum media with dielectric constants 5 (protein interiors) and 78.39 (water). The effect of electron correlation was also studied by comparing Hartree-Fock and MP2 results for both complexes in the gas phase. Greater net charge interchanged upon H-transfer is observed in the anionic complex with respect to the neutral complex. Raising the polarity of the medium increases the amount of net charge transfer in both complexes, although the neutral system exhibits a larger sensitivity to the presence of solvent. Charge transfer associated to N--H...O and N...H--O bonds reveal the ionic contribution to the interaction depending on the number of charged subunits but the presence of solvent affects little this quantity. The lack of electron correlation overestimates all the charges as well as their variations and so uncorrelated calculations should be avoided.     

Conditions for the formation of ions with strong quasisymmetric hydrogen bonds

The conditions necessary for the formation of ions with strong hydrogen bonding (B...H...OH₂)⁺ are determined: 1) acid-base interaction achieves the stage of ion formation; 2) the base molecules contain atoms with unshared electron pairs; and, 3) the heat of protonization of a base molecule in the gas phase is not less than the heat of protonization of a water molecule (711 kJ/mole), but not more than the value determined by the difference between the energy of breaking the strong hydrogen bond in H₅O₂ ⁺ and the heat of the hydrogen bond in a dimer of water, i.e., –836 kJ/mole.Translated from Izvestiya Akademii Nauk SSSR, Seriya Khimicheskaya, No. 1, pp. 32–35, January, 1990.     

Electronic properties of multifurcated bent hydrogen bonds CH3...Y and CH2...Y

H-bonding angle angleYHX has an important effect on the electronic properties of the H-bond Y...HX, such as intra- and intermolecular hyperconjugations and rehybridization, and topological properties of electron density. We studied the multifurcated bent H-bonds of the proton donors H3CZ (Z = F, Cl, Br), H2CO and H2CF2 with the proton acceptors Cl(-) and Br(-) at the four high levels of theory: MP2/6-311++G(d,p), MP2/6-311++G(2df,2p), MP2/6-311++G(3df,3pd) and QCISD/6-311++G(d,p), and found that they are all blue-shifted. These complexes have large interaction energies, 7-12 kcal mol(-1), and large blue shifts, delta r(HC) = -0.0025 --0.006 A and delta v(HC) = 30-90 cm(-1). The natural bond orbital analysis shows that the blue shifts of these H-bonds Y...HnCZ are mainly caused by three factors: rehybridization; indirect intermolecular hyperconjugation n(Y) -->sigma*(CZ), in that the electron density from n(Y) of the proton acceptor is transferred not to sigma*(CH), but to sigma*(CZ) of the donor; intramolecular hyperconjugation n(Z) -->sigma*(CH), in that the electron density in sigma*(CH) comes back to n(Z) of the donor such that the occupancy in sigma*(CH) decreases. The topological properties of the electron density of the bifurcated H-bonds Y...H2CZ are similar to those of the usual linear H-bonds, there is a bond critical point between Y and each hydrogen, and a ring critical point inside the tetragon YHCH. However, the topological properties of electron density of the trifurcated H-bonds Y...H3CZ are essentially different from those of linear H-bonds, in that the intermolecular bond critical point, which represents a closed-shell interaction, is not between Y and hydrogen, but between Y and carbon.     

Supramolecular spin-crossover iron complexes based on imidazole-imidazolate hydrogen bonds

The [Fe(II)(H(3)L)](BF(4))(2).3H(2)O (1) complex was synthesized, where H(3)L (tris[[2-[(imidazole-4-yl)methylidene]amino]ethyl]amine) is a tripodal ligand obtained by condensation of tris(2-aminoethyl)amine and 4-formylimidazole (fim) in a 1:3 molar ratio. Starting from 1, a series of complexes, [Fe(II)(H(1.5)L)](BF(4))(0.5) (2) (=[Fe(II)(H(3)L)][Fe(II)(L)]BF(4)), [Fe(H(1.5)L)]BF(4) (3) (=[Fe(II)(H(3)L)][Fe(III)(L)](BF(4))(2)), [Fe(III)(H(3)L)](BF(4))(3).fim.H(2)O (4), and [Fe(III)(L)].2.5H(2)O (5), has been synthesized and characterized. The single-crystal X-ray structure of each complex has been determined. The Fe(II) compound, 2, and a mixed valence Fe(II)-Fe(III) compound, 3, involve formally hemi-deprotonated ligands, H(1.5)L. The structure of 3 consists of a homochiral two-dimensional assembled sheet, arising from the intermolecular hydrogen bonds between [Fe(II)(H(3)L)](2+) and [Fe(III)(L)](0) (3). All but 5 exhibit spin crossover between low-spin (LS) and high-spin (HS) states. This is a rare case where both Fe(II) and Fe(III) complexes containing the same ligand exhibit spin-crossover behavior. Magnetic susceptibility and M?ssbauer studies showed that 3 has three accessible electronic states: LS Fe(II)-LS Fe(III), HS Fe(II)-LS Fe(III), and HS Fe(II)-HS Fe(III). Compounds 1-3 show the light-induced excited spin-state trapping effect at the Fe(II) sites upon irradiation with green light. The solution magnetic properties, electronic spectra, and electrochemical properties of 1, 4, and 5 were also studied.     

Metal complexes of a phenol-tailed porphyrin with different hydrogen bonds

Hydrogen bonds are very common and important interactions in biological systems, they are used to control the microenvironment around metal centers. It is a challenge to develop appropriate models for studying hydrogen bonds. We have synthesized two metal complexes of the phenol-tailed porphyrin, [Zn(HL)] and [Fe(HL)(C₆H₄(OH)(O))]. X-ray crystallography reveals that the porphyrin functions as a dianion HL^2? and the phenol OH is involved in hydrogen bonds in both structures. In [Zn(HL)], an intramolecular hydrogen bond is formed between the carbonyl oxygen and OH. In [Fe(HL)(C₆H₄(OH)(O))], the unligated O(5) of the ligand is involved in two hydrogen bonds, as a hydrogen bond donor and a hydrogen bond acceptor. The overall electronic effect on the ligand could be very small, with negligible impact on the structure and the spin state of iron(III). The structural differences caused by the hydrogen bonds are also discussed.     

Metal fluorides form strong hydrogen bonds and halogen bonds: measuring interaction enthalpies and entropies in solution

The organometallic compound trans-(tetrafluoropyrid-2-yl)bis(triethylphosphine)-fluoronickel(II) (NiF) is shown to serve as a strong hydrogen bond and halogen bond acceptor in solution via intermolecular interactions with the fluoride ligand. The nature of the interactions has been confirmed by multinuclear NMR spectroscopy. Experimental binding constants, enthalpies, and entropies of interaction with hydrogen-bond-donor indole and halogen-bond-donor iodopentafluorobenzene have been determined by 19F NMR titration. In toluene-d8 solution indole forms a 1:1 and 2:1 complex with NiF (K1 = 57.9(3), K2 = 0.58(4)). Interaction enthalpies and entropies are -23.4(2) kJ mol-1 and -44.5(8) J mol-1 K-1, respectively, for the 1:1 complex; -14.8(8) kJ mol-1 and -53(3) J mol-1 K-1, respectively, for the 2:1 complex. In toluene-d8 solution iodopentafluorobenzene forms only a 1:1 complex (K1 = 3.41(9)) with enthalpy and entropy of interaction of -16(1) kJ mol-1 and -42(4) J mol-1 K-1, respectively. A marked solvent effect was observed for the halogen bond interaction. NMR titrations in heptane solution indicated formation of both 1:1 and 2:1 complexes of iodopentafluorobenzene with NiF (K1 = 21.8(2), K2 = 0.22(4)). Interaction enthalpies and entropies are -26(1) kJ mol-1 and -63(4) J mol-1 K-1, respectively, for the 1:1 complex; -21(1) kJ mol-1 and -83(5) J mol-1 K-1, respectively, for the 2:1 complex. There is a paucity of such experimental energetic data particularly for halogen bonds despite substantial structural data. These measurements demonstrate that halogen bonds are competitive with hydrogen bonds as intermolecular interactions and provide a suitable benchmark for theoretical calculations and quantitative input into design efforts in supramolecular chemistry and crystal engineering.     

Formation of bifurcate hydrogen bonds in complexes of di-ortho-substituted phenols in solution

Scientific-Reseach Institute of Physics, Leningrad State University. University of Turku, Finland. Translated from Zhurnal Strukturnoi Khimii, Vol. 32, No. 1, pp. 87–92, January–February, 1991.     

Understanding enzymic catalysis: the importance of short,strong hydrogen bonds

We have proposed previously that short, strong hydrogen bonds exist in enzyme active sites and that they are important in explaining enzymic rate enhancements. Here, we defend this proposal and provide evidence for likely changes of hydrogen bond strengths during enzymic catalysis.