Modeling of multi-exciton transient absorption spectra of protochlorophyllide aggregates in aqueous solution

Protochlorophyllide (Pchlide) is a natural porphyrin, a precursor of chlorophyll, synthesized by plants for its photosynthetic apparatus. The pigment spontaneously forms aggregates when dissolved in neat water solution. We present here calculations of the transient absorption spectra and its comprising components (ground-state bleach, stimulated emission, and excited-state absorption) for a strongly excitonically coupled linear chain of four Pchlide chromophores, using exciton theory with phenomenological Gaussian line shapes and without energetic disorder. A refined multiexciton model that includes static disorder is applied to fit the experimental power-dependent transient absorption spectra of aqueous protochlorophyllide and the kinetics for delay times up to 20 ps after photoexcitation. We show that population up to the 4-exciton manifold is sufficient to explain the pronounced saturation of the bleaching and the shape changes in the instantaneous, t = 0.2 ps transient spectra when the pulse energy is increased from 10 to 430 nJ per pulse. The decay of the multiexciton manifold is relatively slow and is preceded by a spectroscopically distinct process. We suggest that the exciton states in the Pchlide aggregates are mixed with charge-transfer states (CTS) and that the population and repopulation of the CTS coupled to the exciton states explains the relatively slow decay of the multiexciton manifold. The relevance of our results to the optical properties and dynamics of natural photosynthetic complexes and the possible physical origin of CTS formation are discussed.     

Protein-induced excited-state dynamics of protochlorophyllide

The light-driven NADPH:protochlorophyllide oxidoreductase (POR) is a key enzyme of chlorophyll biosynthesis in angiosperms. POR's unique requirement for light to become catalytically active makes the enzyme an attractive model to study the dynamics of enzymatic reactions in real time. Here, we use picosecond time-resolved fluorescence and femtosecond pump-probe spectroscopy to examine the influence of the protein environment on the excited-state dynamics of the substrate, protochlorophyllide (PChlide), in the enzyme/substrate (PChlide/POR) and pseudoternary complex including the nucleotide cofactor NADP(+) (PChlide/NADP(+)/ POR). In comparison with the excited-state processes of unbound PChlide, the lifetime of the thermally equilibrated S(1) excited state is lengthened from 3.4 to 4.4 and 5.4 ns in the PChlide/POR and PChlide/NADP(+)/POR complex, whereas the nonradiative rates are decreased by ～30 and 40%, respectively. This effect is most likely due to the reduced probability of nonradiative decay into the triplet excited state, thus keeping the risk of photosensitized side reactions in the enzyme low. Further, the initial reaction path involves the formation of an intramolecular charge-transfer state (S(ICT)) as an intermediate product. From a strong blue shift in the excited-state absorption, it is concluded that the S(ICT) state is stabilized by local interactions with specific protein sites in the catalytic pocket. The possible relevance of this result for the catalytic reaction in the enzyme POR is discussed.     

Molecular aggregates in aqueous solutions of bile acid salts. Molecular dynamics simulation study

The aggregation behavior of two bile acid salts (i.e., sodium cholate and sodium deoxycholate) has been studied in their aqueous solutions of three different concentrations (i.e., 30, 90,and 300 mM) by means of molecular dynamics computer simulations. To let the systems reach thermodynamic equilibrium, rather long simulations have been performed: the equilibration period, lasting for 20-50 ns, has been followed by a 20 ns long production phase, during which the average size of the bile aggregates (regarded to be the slowest varying observable) has already fluctuated around a constant value. The production phase of the runs has been about an order of magnitude longer than the average lifetime of both the monomeric bile ions and the bonds that link two neighboring bile ions together to be part of the same aggregate. This has allowed the bile ions belonging to various aggregates to be in a dynamic equilibrium with the isolated monomers. The observed aggregation behavior of the studied bile ions has been found to be in good qualitative agreement with experimental findings. The analysis of the results has revealed that, due to their molecular structure, which is markedly different from that of the ordinary aliphatic surfactants, the bile ions form rather different aggregates than the usual spherical micelles. In the lowest concentration solution studied, the bile ions only form small oligomers. In the case of deoxycholate, these oligomers, such as the ordinary micelles, are kept together by hydrophobic interactions, whereas in the sodium cholate system, small hydrogen-bonded aggregates (mostly dimers) are also present. In the highest concentration systems, the bile ions form large secondary micelles, which are kept together both by hydrophobic interactions and by hydrogen bonds. Namely, in these secondary micelles, small hydrophobic primary micelles are linked together via the formation of hydrogen bonds between their hydrophilic outer surfaces.     

Excited state dynamics and catalytic mechanism of the light-driven enzyme protochlorophyllide oxidoreductase

The reduction of protochlorophyllide (Pchlide) to chlorophyllide, catalysed by the enzyme protochlorophyllide oxidoreductase (POR), is the penultimate step in the chlorophyll biosynthetic pathway and is a key light-driven reaction that triggers a profound transformation in plant development. As POR is light-activated it can provide new information on the way in which light energy can be harnessed to power enzyme reactions. Consequently, POR presents a unique opportunity to study catalysis at low temperatures and on ultrafast timescales, which are not usually accessible for the majority of enzymes. Recent advances in our understanding of the catalytic mechanism of POR illustrate why it is an important model for studying enzyme catalysis and reaction dynamics. The reaction involves the addition of one hydride and one proton, and catalysis is initiated by the absorption of light by the Pchlide substrate. As the reaction involves the Pchlide excited state, a variety of ultrafast spectroscopic measurements have shown that significant parts of the reaction occur on the picosecond timescale. A number of excited state Pchlide species, including an intramolecular charge transfer complex and a hydrogen bonded intermediate, are proposed to be required for the subsequent hydride and proton transfers, which occur on the microsecond timescale. Herein, we review spectroscopic investigations, with a particular focus on time-resolved transient absorption and fluorescence experiments that have been used to study the excited state dynamics and catalytic mechanism of POR.     

On the dynamics of the TPPS4 aggregation in aqueous solutions: successive formation of H and J aggregates

The dynamics of aggregation of meso-tetrakis (p-sulfonatofenyl) porphyrin (TPPS4) in function of its concentration, pH and ionic strength was studied by optical absorption, fluorescence and resonance light scattering (RLS) techniques. In the region of pH, where TPPS4 exists in biprotonated form, the addition of NaCl induces the TPPS4 aggregation due to the formation of the "cloud" of counter ions around the TPPS4 molecule thus reducing electrostatic repulsion between the porphyrin molecules. The formation of this "cloud" shifts the pKa value to acid region (from 5.0 in the absence of salt to 4.5 at [NaCl] = 0.4 M), reduces the TPPS4 absorption in all spectral range and quantum yield and lifetime of fluorescence (from 0.27 to 0.17 and from 4.00+/-0.04 to 3.00+/-0.03 ns in the absence of salt and in the presence of NaCl, respectively). The aggregation process involves two successive stages: initially H aggregates are formed, which in time are transformed in J ones. The existence of these two stages was confirmed by the fluorescence and RLS data. The kinetics of the formation of J aggregates is characterized by the induction time t1 and the average growth time t2, which depend on both TPPS4 and salt concentrations. The induction period t1 appears as a result of initial formation of H aggregates and their successive transformation in J ones. At very high TPPS4 concentrations, the J aggregates are united in more complex structures such as hollow cylinders or helixes.     

A molecular dynamics simulation of micellar aggregates in aqueous solutions of hexadecyltrimethylammonium chloride with admixtures of low-molecular-weight substances

A molecular dynamics simulation was performed for spherical and cylindrical hexadecyltrimethylammonium chloride micelles in aqueous solutions containing admixtures of isopropanol, acetone, and sodium benzoate. Local particle (atom, atomic group, and ion) density profiles were obtained depending on the distance to the center of a micelle. The stationary size of aggregates was determined, and the micelle surface area per surfactant polar head was estimated.     

Molecular recognition with micellar and micelle-like aggregates in aqueous media

In this article, attention is directed to molecular recognition by micellar aggregates made with ionic surfactants involving directed interactions of substrates. Particular emphasis is placed on chiral recognition of enantiomers by hydrogen bonding functionalities incorporated in hydrophobic micellar interior. Hydrophobic properties within micelles, the ordering of their polar headgroups containing chiral functionalities essential for the recognition and the cessation of micellar kinetic association-dissociation with polymerization and immobilization of the surfactants on the support are discussed.     

Exciton dynamics of GaSe nanoparticle aggregates

Time-resolved and static spectroscopic results on GaSe nanoparticle aggregates are presented to elucidate the exciton relaxation and diffusion dynamics. These results are obtained in room-temperature TOP/TOPO solutions at various concentrations. The aggregate absorption spectra are interpreted in terms of electrostatic coupling and covalent interactions between particles. The spectra at various concentrations may then be interpreted in terms of aggregate distributions calculated from a simple equilibrium model. These distributions are used to interpret concentration-dependent emission anisotropy kinetics and time-dependent emission spectral shifts. The emission spectra are reconstructed from the static emission spectra and decay kinetics obtained at a range of wavelengths. The results indicate that the aggregate z axis persistence length is about 9 particles. The results also show that the one-dimensional exciton diffusion coefficient is excitation wavelength dependent and has a value of about 2 x 10(-5) cm(2)/s following 406 nm excitation. Although exciton diffusion results in very little energy relaxation, subsequent hopping of trapped electron/hole pairs occurs by a Forster mechanism and strongly red shifts the emission spectrum.     

Single molecule force spectroscopy of asphaltene aggregates

Asphaltene aggregation and deposition cause severe problems in nearly all phases of petroleum processing. To resolve those problems, understanding the aggregation mechanisms is a prerequisite and has attracted the interest of a great number of investigators. However, to date, the nature and extent of asphaltene aggregation remain widely debated. In the present study, we attempt to investigate asphaltene aggregation from a completely new perspective. The technique of single molecule force spectroscopy (SMFS) was used to investigate the response of single asphaltene aggregates under an external pulling force. Force curves representing the stretching of single asphaltene aggregates were obtained in simple electrolyte solutions (KCl and calcium) and organic solvents (toluene and heptane). These force curves were well-fitted by the modified worm-like chain model, indicating that those asphaltene aggregates acted like long-chain polymers under pulling by an external force. It was found that lower solution pH values and the presence of divalent cations resulted in a lower bending rigidity of the formed aggregates. The information retrieved from the force curves suggests that asphaltene molecules with a structure featuring small aromatic clusters connected by aliphatic chains do exist and that asphaltene aggregation could occur through a linear polymerization mechanism. The current study extends the application scope of SMFS.     

Nanometer-scale ion aggregates in aqueous electrolyte solutions: guanidinium carbonate

Neutron diffraction with isotopic substitution (NDIS) experiments and molecular dynamics (MD) simulations have been used to characterize the structure of aqueous guanidinium carbonate (Gdm2CO3) solutions. The MD simulations found very strong hetero-ion pairing in Gdm2CO3 solution and were used to determine the best structural experiment to demonstrate this ion pairing. The NDIS experiments confirm the most significant feature of the MD simulation, which is the existence of strong hetero-ion pairing between the Gdm+ and CO3(2-) ions. The neutron structural data also support the most interesting feature of the MD simulation, that the hetero-ion pairing is sufficiently strong as to lead to nanometer-scale aggregation of the ions. The presence of such clustering on the nanometer length scale was then confirmed using small-angle neutron scattering experiments. Taken together, the experiment and simulation suggest a molecular-level explanation for the contrasting denaturant properties of guanidinium salts in solution.     

Exciton dynamics in chromophore aggregates with correlated environment fluctuations

We study the effects of correlated molecular transition energy fluctuations in molecular aggregates on the density matrix dynamics, and their signatures in the optical response. Correlated fluctuations do not affect single-exciton dynamics and can be described as a nonlocal contribution to the spectral broadening, which appears as a multiplicative factor in the time-domain response function. Intraband coherences are damped only by uncorrelated transition energy fluctuations. The signal can then be expressed as a spectral convolution of a local contribution of the uncorrelated fluctuations and the nonlocal contribution of the correlated fluctuations.     

Ultrafast electron relaxation dynamics in coupled metal nanoparticles in aggregates

We report the effect of aggregation in gold nanoparticles on their ultrafast electron-phonon relaxation dynamics measured by femtosecond transient absorption pump-probe spectroscopy. UV-visible extinction and transient absorption of the solution-stable aggregates of gold nanoparticles show a broad absorption in the 550-700-nm region in addition to the isolated gold nanoparticle plasmon resonance. This broad red-shifted absorption can be attributed to contributions from gold nanoparticle aggregates with different sizes and/or different fractal structures. The electron-phonon relaxation, reflected as a fast decay component of the transient bleach, is found to depend on the probe wavelength, suggesting that each wavelength interrogates one particular subset of the aggregates. As the probe wavelength is changed from 520 to 635 nm across the broad aggregate absorption, the rate of electron-phonon relaxation increases. The observed trend in the hot electron lifetimes can be explained on the basis of an increased overlap of the electron oscillation frequency with the phonon spectrum and enhanced interfacial electron scattering, with increasing extent of aggregation. The experimental results strongly suggest the presence of intercolloid electronic coupling within the nanoparticle aggregates, besides the well-known dipolar plasmon coupling.     

Polyaniline precipitation in aqueous medium: from bulk aggregates to nanoparticles

A postsynthetic self-assembly system was designed to investigate a construction process from suspended polyaniline (PANI) molecules to condensed aggregates. The conventionally synthesized PANI was dissolved in polar solvent and introduced into acidic medium with electrolytes similar to the aniline chemical oxidative polymerization (COP) medium. In this way, reaction interference that is usually encountered in the COP process could be avoided, and influences of medium conditions including organic electrolytes on the self-assembly behaviors of PANI were studied. It was discovered that, in a static aqueous medium with moderate pH and rich electrolytes, PANI molecules composed of bulk aggregates could self-assemble into well-dispersed nanoparticles with few structural changes. Electrostatic force is considered to dominate the self-assembly of PANI molecules as compared with other noncovalent interaction or the effect of soft templates such as ionic liquid and surfactant. The results are supposed to provide better understanding on the formation mechanism of micro/nanostructured PANI.     

Characterization of the aggregates of N-alkyl-N-methylpyrrolidinium bromide surfactants in aqueous solution

We have characterized a new class of surfactant molecules using fluorescence spectroscopic and light-scattering techniques. Our results suggest that this homologous series of N-alkyl-N-methlypyrrolidinium bromide (CnMPB) surfactants with n = 10, 12, 14, 16, and 18 represents a bridge between the well-characterized alkyltrimethylammonium bromide (CnTAB) and dialkyldimethylammonium bromide (di-CnDAB) surfactant series. For the smaller members of the CnMPB series with n = 10, 12, and 14, our results are consistent with the formation of spherical micelles as the surfactant concentration is increased. With increasing alkyl chain length, we observe that the critical micelle concentration decreases and the aggregation number increases, typical of single-tail surfactants. For C16MPB, the formation of micelles at dilute concentrations (0.10 mM) is likely, followed by the coexistence of micelles and small unilamellar vesicles at higher concentrations up to 0.82 mM where only vesicles are present. For C18MPB, our data are consistent with the formation of vesicles only. We demonstrate in this study that the combination of spectroscopic and light-scattering methods is a powerful approach to reveal aspects of aggregate structure and morphology in aqueous CnMPB surfactant systems. In particular, the sensitivity of the fluorescence probe prodan to the polarity of its microenvironment enables the rich complexity of surfactant aggregates exhibited by this series of amphiphilic molecules to be detected.     

Nanometer-scale ion aggregates in aqueous electrolyte solutions: guanidinium sulfate and guanidinium thiocyanate

Neutron diffraction experiments and molecular dynamics simulations are used to study the structure of aqueous solutions of two electrolytes: guanidinium sulfate (a mild protein conformation stabilizer) and guanidinium thiocyanate (a powerful denaturant). The MD simulations find the unexpected result that in the Gdm2SO4 solution the ions aggregated into mesoscopic (nanometer-scale) clusters, while no such aggregation is found in the GdmSCN solution. The neutron diffraction studies, the most direct experimental probe of solution structure, provide corroborating evidence that the predicted very strong ion pairing does occur in solutions of 1.5 m Gdm2SO4 but not in 3 m solutions of GdmSCN. A mechanism is proposed as to how this mesoscopic solution structure affects solution denaturant properties and suggests an explanation for the Hofmeister ordering of these solutions in terms of this ion pairing and the ability of sulfate to reverse the denaturant power of guanidinium.     

Fluorescence lifetimes of protochlorophyllide in plants with different proportions of short-wavelength and long-wavelength protochlorophyllide spectral forms

Dark-grown leaves of maize (Zea mays), wheat (Triticum aestivum), wild-type pea (Pisum sativum) and its light-independent photomorphogenesis mutant (lip1) have different proportions of protochlorophyllide (Pchlide) forms as revealed by low-temperature fluorescence emission spectra. Four discrete spectral forms of Pchlide, with emission peaks around 633, 640, 656 and 670 nm, could be distinguished after Gaussian deconvolution. In maize and wheat the 656 nm component was the most prominent, whereas for wild-type pea and its lip1 mutant, the 633 and 640 nm components contributed mostly to the fluorescence emission spectra. For the fluorescence lifetimes measured at 77 K a double exponential model was the most adequate to describe the Pchlide fluorescence decay not only for the Pchlide(650-656) form but also for the short-wavelength Pchlide forms. A fast component in the range 0.3-0.8 ns and a slow component in the range 5.1-7.1 ns were present in all samples, but the values varied, depending on species. The long-wavelength Pchlide(650-656) form had a slow component with a lifetime between 5.1 and 6.7 ns, probably reflecting the fluorescence from aggregated Pchlide. The short-wavelength Pchlide(628-633) form had values of the slow component varying between 6.2 and 7.1 ns. This represents a monomeric but probably protein-bound Pchlide form because the free Pchlide in solution has a much longer lifetime around 10 ns at 77 K. The contribution of different Pchlide forms to the measured lifetime values is discussed.     

Structure and dynamics in solvent-polarity-induced aggregates from a c60 fullerene-based dyad

A novel methanofullerene dyad based on a hydrophobic (acceptor C60 moiety)-hydrophilic (bridge with benzene and ester functionalities)-hydrophobic (donor didodecyloxybenzene) network is designed and synthesized. Electronic absorption spectral features revealed the molecule to exhibit a strong tendency to self-aggregate in binary solvent mixtures at room temperature, where the dielectric constant exceeds a critical value, approximately 30. The dynamic structure factors of these spherical aggregates revealed stretched exponential decay with sizes varying between 110 and 250 nm with an increasing concentration, estimated from the dynamic light scattering experiments. However, a loss of shape selectivity of these aggregates was noted at lower water volume fractions in the binary solvent mixtures. The water-extracted spherical clusters were identified to be fractals with a dimension of 1.85, leading to diffusion-limited cluster aggregation as the mechanistic route for clusterization.     

The conformational dynamics of humic polyanions in model organic and organo-mineral aggregates

Molecular mechanics calculations and simulated annealing were applied to model humic polyanions originating from lignin. The dynamic behavior of such oxidized lignins in model soil organic complexes, such as an oxidized lignin-carbohydrate complex (LCC) and humic (oxidized LCC)-clay aggregates, was analyzed. Neither ionization nor hydrogen bonding bring significant changes in the conformational properties of oxidized lignin and LCC. Oxidized lignin and LCC oligomers (humic substances in soil) bind to the mineral surfaces, a process that was exemplified in computational experiments on complexes with muscovite. Upon ionization, a lignin-derived oligomer develops strong attractive organo-mineral interactions through cation bridges. Without metal cations, electrostatic repulsion between negatively charged anions and the oxygen-mineral surface prevails, and the two parts of the organo-mineral complex drift apart. This tendency is typical of an oxidized lignin oligomer but not of a topological oxidized LCC.     

Component dynamics in polyvinylpyrrolidone concentrated aqueous solutions

(2)H-nuclear magnetic resonance (NMR) and neutron scattering (NS) on isotopically labelled samples have been combined to investigate the structure and dynamics of polyvinylpyrrolidone (PVP) aqueous solutions (4 water molecules/monomeric unit). Neutron diffraction evidences the nanosegregation of polymer main-chains and water molecules leading to the presence of water clusters. NMR reveals the same characteristic times and spectral shape as those of the slower process observed by broadband dielectric spectroscopy in this system [S. Cerveny et al., J. Chem. Phys. 128, 044901 (2008)]. The temperature dependence of such relaxation time crosses over from a cooperative-like behavior at high temperatures to an Arrhenius behavior at lower temperatures. Below the crossover, NMR features the spectral shape as due to a symmetric distribution of relaxation times and the underlying motions as isotropic. NS results on the structural relaxation of both components-isolated via H/D labeling-show (i) anomalously stretched and non-Gaussian functional forms of the intermediate scattering functions and (ii) a strong dynamic asymmetry between the components that increases with decreasing temperature. Strong heterogeneities associated to the nanosegregated structure and the dynamic asymmetry are invoked to explain the observed anomalies. On the other hand, at short times the atomic displacements are strongly coupled for PVP and water, presumably due to H-bond formation and densification of the sample upon hydration.