Electron Capture Dissociation of Hydrogen-Deficient Peptide Radical Cations

Hydrogen-deficient peptide radical cations exhibit fascinating gas phase chemistry, which is governed by radical driven dissociation and, in many cases, by a combination of radical and charge driven fragmentation. Here we examine electron capture dissociation (ECD) of doubly, [M + H]^2+?, and triply, [M + 2H]^3+?, charged hydrogen-deficient species, aiming to investigate the effect of a hydrogen-deficient radical site on the ECD outcome and characterize the dissociation pathways of hydrogen-deficient species in ECD. ECD of [M + H]^2+? and [M + 2H]^3+? precursor ions resulted in efficient electron capture by the hydrogen-deficient species. However, the intensities of c- and z-type product ions were reduced, compared with those observed for the even electron species, indicating suppression of N?CC_?? backbone bond cleavages. We postulate that radical recombination occurs after the initial electron capture event leading to a stable even electron intermediate, which does not trigger N?CC_?? bond dissociations. Although the intensities of c- and z-type product ions were reduced, the number of backbone bond cleavages remained largely unaffected between the ECD spectra of the even electron and hydrogen-deficient species. We hypothesize that a small ion population exist as a biradical, which can trigger N?CC_?? bond cleavages. Alternatively, radical recombination and N?CC_?? bond cleavages can be in competition, with radical recombination being the dominant pathway and N?CC_?? cleavages occurring to a lesser degree. Formation of b- and y-type ions observed for two of the hydrogen-deficient peptides examined is also discussed.     

On the Dissociation of Aromatic Radical Anions in Solution

A new theoretical formulation is given for the reaction rate and path for the important reaction class of aromatic radical anion dissociation in solution [Ar? X]^?.→Ar^.+X^?, and is illustrated for the case of the cyanochlorobenzene radical anion [CN? Φ? Cl]^?. in dimethylformamide. Among the theory's novel features is the inclusion of the conical intersection aspect of this ground electronic state problem, which is key in allowing the reaction to occur and which has a significant impact on the reaction barrier height. Reasonable agreement with the experimental rate is found.     

Tautomerization and Dissociation of Molecular Peptide Radical Cations

Radical‐mediated dissociations of peptide radical cations have intriguing unimolecular gas phase chemistry, with cleavages of almost every bond of the peptide backbone and amino acid side chains in a competitive and apparently “stochastic” manner. Challenges of unraveling mechanistic details are related to complex tautomerizations prior to dissociations. Recent conjunctions of experimental and theoretical investigations have revealed the existence of non‐interconvertible isobaric tautomers with a variety of radical‐site‐specific initial structures, generated from dissociative electron transfer of ternary metal‐ligand‐peptide complexes. Their reactivity is influenced by the tautomerization barriers, perturbing the nature, location, or number of radical and charge site(s), which also determine the energetics and dynamics of the subsequent radical‐mediated dissociatons. The competitive radical‐ and charge‐induced dissociations are extremely dependent on charge density. Charge sequesting can reduce the charge densities on the peptide backbone and hence enhance the flexibility of structural rearrangement. Analysing the structures of precursors, intermediates and products has led to the discovery of many novel radical migration prior to peptide backbone and/or side chain fragmentations. Upon these successes, scientists will be able to build peptide cationic analogues/tautomers having a variety of well‐defined radical sites.     

Formation and Dissociation of Phosphorylated Peptide Radical Cations

In this study, we generated phosphoserine- and phosphothreonine-containing peptide radical cations through low-energy collision-induced dissociation (CID) of the ternary metal?Cligand phosphorylated peptide complexes [Cu^II(terpy) _p M]^·2+ and [Co^III(salen) _p M]^·+ [ _p M: phosphorylated angiotensin III derivative; terpy: 2,2':6',2''-terpyridine; salen: N,N '-ethylenebis(salicylideneiminato)]. Subsequent CID of the phosphorylated peptide radical cations ( _p M^·+) revealed fascinating gas-phase radical chemistry, yielding (1) charge-directed b- and y-type product ions, (2) radical-driven product ions through cleavages of peptide backbones and side chains, and (3) different degrees of formation of [M ?C H₃PO₄]^·+ species through phosphate ester bond cleavage. The CID spectra of the _p M^·+ species and their non-phosphorylated analogues featured fragment ions of similar sequence, suggesting that the phosphoryl group did not play a significant role in the fragmentation of the peptide backbone or side chain. The extent of neutral H₃PO₄ loss was influenced by the peptide sequence and the initial sites of the charge and radical. A preliminary density functional theory study, at the B3LYP 6-311++G(d,p) level of theory, of the neutral loss of H₃PO₄ from a prototypical model??N-acetylphosphorylserine methylamide??revealed several factors governing the elimination of neutral phosphoryl groups through charge- and radical-induced mechanisms.     

Sequence Ion Structures and Dissociation Chemistry of Deprotonated Sucrose Anions

We investigate the tandem mass spectrometry of regiospecifically labeled, deprotonated sucrose analytes. We utilize density functional theory calculations to model the pertinent gas-phase fragmentation chemistry of the prevalent glycosidic bond cleavages (B₁-Y₁ and C₁-Z₁ reactions) and compare these predictions to infrared spectroscopy experiments on the resulting B₁ and C₁ product anions. For the C₁ anions, barriers to interconversion of the pyranose [α-glucose-H]^?, C₁ anions to entropically favorable ring-open aldehyde-terminated forms were modest (41 kJ mol^?1) consistent with the observation of a band assigned to a carbonyl stretch at ~?1680–1720 cm^?1. For the B₁ anions, our transition structure calculations predict the presence of both deprotonated 1,6-anhydroglucose and carbon 2-ketone ((4S,5S,6R)-4,5-dihydroxy-6-(hydroxymethyl)dihydro-2H-pyran-3(4H)-one) anion structures, with the latter predominating. This hypothesis is supported by our spectroscopic data which show diagnostic bands at 1600, 1674, and 1699 cm^?1 (deprotonated carbon 2-ketone structures), and at ~?1541 cm^?1 (both types of structure) and RRKM rate calculations. The deprotonated carbon 2-ketone structures are also the lowest energy product B₁ anions.

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Gas-Phase Peptide Sulfinyl Radical Ions: Formation and Unimolecular Dissociation

A variety of peptide sulfinyl radical (RSO?) ions with a well-defined radical site at the cysteine side chain were formed at atmospheric pressure (AP), sampled into a mass spectrometer, and investigated via collision-induced dissociation (CID). The radical ion formation was based on AP reactions between oxidative radicals and peptide ions containing single inter-chain disulfide bond or free thiol group generated from nanoelectrospray ionization (nanoESI). The radical induced reactions allowed large flexibility in forming peptide radical ions independent of ion polarity (protonated or deprotonated) or charge state (singly or multiply charged). More than 20 peptide sulfinyl radical ions in either positive or negative ion mode were subjected to low energy collisional activation on a triple-quadrupole/linear ion trap mass spectrometer. The competition between radical- and charge-directed fragmentation pathways was largely affected by the presence of mobile protons. For peptide sulfinyl radical ions with reduced proton mobility (i.e., singly protonated, containing basic amino acid residues), loss of 62?Da (CH₂SO), a radical-initiated dissociation channel, was dominant. For systems with mobile protons, this channel was suppressed, while charge-directed amide bond cleavages were preferred. The polarity of charge was found to significantly alter the radical-initiated dissociation channels, which might be related to the difference in stability of the product ions in different ion charge polarities.     

N-亚硝基吲哚系列化合物及其自由基负离子在乙腈介质中N-NO键断裂能的测定

利用滴定量热技术并结合适当的热力学循环测定了乙腈溶液中7个取代的N-亚硝基吲哚化合物中N—NO键的异裂能和均裂能, 能量范围分别为206.1~246.2 kJ/mol和119.1~124.6 kJ/mol. 表明N-亚硝基吲哚均裂释放NO自由基(NO·)比异裂释放NO正离子(NO+)要容易得多, 通过热力学循环得到的相应自由基负离子中N—NO键的异裂能和均裂能的能量范围分别为25.5~34.4和5.0~40.5 kJ/mol, 表明所研究化合物的自由基负离子在室温下很不稳定.     

Formation and Fragmentation of Radical Peptide Anions: Insights from Vacuum Ultra Violet Spectroscopy

We have studied the photodissociation of gas-phase deprotonated caerulein anions by vacuum ultraviolet (VUV) photons in the 4.5 to 20 eV range, as provided by the DESIRS beamline at the synchrotron radiation facility SOLEIL (France). Caerulein is a sulphated peptide with three aromatic residues and nine amide bonds. Electron loss is found to be the major relaxation channel at every photon energy. However, an increase in the fragmentation efficiency (neutral losses and peptide backbone cleavages) as a function of the energy is also observed. The oxidized ions, generated by electron photodetachment were further isolated and activated by collision (CID) in a MS³ scheme. The branching ratios of the different fragments observed by CID as a function of the initial VUV photon energy are found to be independent of the initial photon energy. Thus, there is no memory effect of the initial excitation energy on the fragmentation channels of the oxidized species on the time scale of our tandem MS experiment. We also report photofragment yields as a function of photon energy for doubly deprotonated caerulein ions, for both closed-shell ([M–2H]^2–) non-radical ions and open-shell ([M–3H]^2–•) radical ions. These latter ions are generated by electron photodetachment from [M–3H]^3– precursor ions. The detachment yield increases monotonically with the energy with the appearance of several absorption bands. Spectra for radical and non-radical ions are quite similar in terms of observed bands; however, the VUV fragmentation yield is enhanced by the presence of a radical in caerulein peptides.     

Intriguing Role of a Quaternary Ammonium Cation in the Dissociation Chemistry of Keggin Polyoxometalate Anions

The gas-phase fragmentations of a series of Keggin polyoxometalate anions with molecular formula of TBA_n[XM₁₂O₄₀] (X = P, Si; M = Mo, W) were studied by electrospray ionization tandem mass spectrometry. The bare polyoxoanions [XM₁₂O₄₀]^n- as well as the non-covalent complexes {TBA[XM₁₂O₄₀]}^(n-1)- and {TBA_m[XM₁₂O₄₀]₂}^3- displayed characteristic dissociation pathways. Fragmentation of [XM₁₂O₄₀]^n- led to pairs of complementary product anions whose total stoichiometry and charge matched those of the precursor anion, consistent with the previous study by Ma et al. The nature of the non-covalent interaction between [XM₁₂O₄₀]^n- and TBA⁺ was addressed in detail via the example of {TBA[XM₁₂O₄₀]}^(n-1)-. The non-covalent interaction [1] primarily dominated by the Coulombic attraction of the opposite charges completely changed the dissociation chemistry of [XM₁₂O₄₀]^n-. The non-covalent complexes {TBA[XM₁₂O₄₀]}^(n-1)- and {TBA_m[XM₁₂O₄₀]₂}^3-, formed by the charge reduction during the electrospray process, underwent distinct dissociation routes: {TBA[XM₁₂O₄₀]}^(n-1)- fragmented to give rise to its product ion {(C₄H₉)[XM₁₂O₄₀]}^(n-1)- by cleaving the N−C covalent bond inside the TBA⁺ cation whereas {TBA_m[XM₁₂O₄₀]₂}^3- dissociated into a pair of product ions, {TBA_i[XM₁₂O₄₀]}^2- and {TBA_m-i[XM₁₂O₄₀]}^-, by breaking the non-covalent bond between [XM₁₂O₄₀]^n- and TBA⁺. In addition, energy-variable CID was used to map the relative stabilities of the ion clusters in the gas phase, which was in excellent agreement with the relative orders of thermal stability in the condensed phase.     

Ground and Excited-Electronic-State Dissociations of Hydrogen-Rich and Hydrogen-Deficient Tyrosine Peptide Cation Radicals

We report a comprehensive study of collision-induced dissociation (CID) and near-UV photodissociation (UVPD) of a series of tyrosine-containing peptide cation radicals of the hydrogen-rich and hydrogen-deficient types. Stable, long-lived, hydrogen-rich peptide cation radicals, such as [AAAYR + 2H]^+● and several of its sequence and homology variants, were generated by electron transfer dissociation (ETD) of peptide-crown-ether complexes, and their CID-MS³ dissociations were found to be dramatically different from those upon ETD of the respective peptide dications. All of the hydrogen-rich peptide cation radicals contained major (77%–94%) fractions of species having radical chromophores created by ETD that underwent photodissociation at 355 nm. Analysis of the CID and UVPD spectra pointed to arginine guanidinium radicals as the major components of the hydrogen-rich peptide cation radical population. Hydrogen-deficient peptide cation radicals were generated by intramolecular electron transfer in Cu^II(2,2′:6′,2″-terpyridine) complexes and shown to contain chromophores absorbing at 355 nm and undergoing photodissociation. The CID and UVPD spectra showed major differences in fragmentation for [AAAYR]^+● that diminished as the Tyr residue was moved along the peptide chain. UVPD was found to be superior to CID in localizing C_α-radical positions in peptide cation radical intermediates.

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Metastable Dissociation of Anions Formed by Electron Attachment

A comprehensive analysis of metastable dissociation of 2,4‐dinitrotoluene (DNT) parent anions formed by attachment of electrons of controlled energy is presented. We characterize the energy dependence and kinetic energy release of the reaction which competes with autodetachment. A surprising finding is a highly exothermic metastable reaction triggered by the attachment of thermal electrons which we relate to the well‐known electrostatic ignition hazards of DNT and other explosives. Quantum chemical calculations are performed for dinitrobenzene in order to elucidate the process of NO abstraction.     

Leveraging Electron Transfer Dissociation for Site Selective Radical Generation: Applications for Peptide Epimer Analysis

Traditional electron-transfer dissociation (ETD) experiments operate through a complex combination of hydrogen abundant and hydrogen deficient fragmentation pathways, yielding c and z ions, side-chain losses, and disulfide bond scission. Herein, a novel dissociation pathway is reported, yielding homolytic cleavage of carbon–iodine bonds via electronic excitation. This observation is very similar to photodissociation experiments where homolytic cleavage of carbon–iodine bonds has been utilized previously, but ETD activation can be performed without addition of a laser to the mass spectrometer. Both loss of iodine and loss of hydrogen iodide are observed, with the abundance of the latter product being greatly enhanced for some peptides after additional collisional activation. These observations suggest a novel ETD fragmentation pathway involving temporary storage of the electron in a charge-reduced arginine side chain. Subsequent collisional activation of the peptide radical produced by loss of HI yields spectra dominated by radical-directed dissociation, which can be usefully employed for identification of peptide isomers, including epimers.

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Fragmentation of Singly,Doubly, and Triply Charged Hydrogen Deficient Peptide Radical Cations in Infrared Multiphoton Dissociation and Electron Induced Dissociation

Gas phase fragmentation of hydrogen deficient peptide radical cations continues to be an active area of research. While collision induced dissociation (CID) of singly charged species is widely examined, dissociation channels of singly and multiply charged radical cations in infrared multiphoton dissociation (IRMPD) and electron induced dissociation (EID) have not been, so far, investigated. Here, we report on the gas phase dissociation of singly, doubly and triply charged hydrogen deficient peptide radicals, [M + nH]^(n+1)+· (n = 0, 1, 2), in MS³ IRMPD and EID and compare the observed fragmentation pathways to those obtained in MS³ CID. Backbone fragmentation in MS³ IRMPD and EID was highly dependent on the charge state of the radical precursor ions, whereas amino acid side chain cleavages were largely independent of the charge state selected for fragmentation. Cleavages at aromatic amino acids, either through side chain loss or backbone fragmentation, were significantly enhanced over other dissociation channels. For singly charged species, the MS³ IRMPD and EID spectra were mainly governed by radical-driven dissociation. Fragmentation of doubly and triply charged radical cations proceeded through both radical- and charge-driven processes, resulting in the formation of a wide range of backbone product ions including, a-, b-, c-, y-, x-, and z-type. While similarities existed between MS³ CID, IRMPD, and EID of the same species, several backbone product ions and side chain losses were unique for each activation method. Furthermore, dominant dissociation pathways in each spectrum were dependent on ion activation method, amino acid composition, and charge state selected for fragmentation.     

Out-of-Plane Distortions of Chlorinated Nitrobenzene Radical Anions

According to UHF/INDO calculations of the model conformations of the chlorinated nitrobenzene radical anions, the rotation of the nitro group relative to the plane of the benzene ring is accompanied by its pyramidal deformation caused by the pseudo-Jahn–Teller effect. The degree of the structural distortions of the chlorinated nitrobenzene radical anions depends on the arrangement of the chlorine atoms in the benzene ring and on the solvent, increasing from DMF to its mixtures with water. The isotropic hyperfine coupling constants and their dependence on the water content in a binary mixture of solvents are interpreted for a number of chlorinated nitrobenzene radical anions.     

The Radical Cations and the Radical Anions of Some Weitz-Type S-Donors

The radical cations and the radical anions of 1,6-dithiapyrene ( 1 ) and 3,10-dithiaperylene ( 2 ) as well as those of three further Weitz-type S-donors 3 , 4 , and 5 have been studied by ESR spectroscopy. The experimental findings for (widths and behaviour on saturation of hyperfine lines) suggest that the ground state of this radical anion is effectively degenerate. With the exception of , the ESR studies of all radical ions could be complemented by the use of the ENDOR and general TRIPLE resonance techniques. In addition to proton hyperfine data, ³³S coupling constants have been determined for (0.53mT), (0.46mT), and (0.34mT); they are in agreement with the predicted substantial π-spin populations at the S-atoms.     

Out-of-Plane Distortions in Fluorinated Nitrobenzene Radical Anions

According to the data of UHF/INDO calculations of the model conformations of fluorinated nitrobenzene radical anions, rotation of the nitro group relative to the plane of the benzene ring is accompanied by a pyramidal distortion of the group, which is of pseudo-Jahn–Teller nature. The degree of structural distortions depends on the position of the fluorine atoms in the benzene ring and on the solvent, increasing from DMF to DMF–water mixtures. The values of isotropic hyperfine interaction constants are interpreted in the series of fluorinated nitrobenzene radical anions, and the effects of water content in binary mixtures of solvents are discussed.     

Dissociation Behavior of a TEMPO-Active Ester Cross-Linker for Peptide Structure Analysis by Free Radical Initiated Peptide Sequencing (FRIPS) in Negative ESI-MS

We have synthesized a homobifunctional amine-reactive cross-linking reagent, containing a TEMPO (2,2,6,6-tetramethylpiperidine-1-oxy) and a benzyl group (Bz), termed TEMPO-Bz-linker, to derive three-dimensional structural information of proteins. The aim for designing this novel cross-linker was to facilitate the mass spectrometric analysis of cross-linked products by free radical initiated peptide sequencing (FRIPS). In an initial study, we had investigated the fragmentation behavior of TEMPO-Bz-derivatized peptides upon collision activation in (+)-electrospray ionization collision-induced dissociation tandem mass spectrometry (ESI-CID-MS/MS) experiments. In addition to the homolytic NO-C bond cleavage FRIPS pathway delivering the desired odd-electron product ions, an alternative heterolytic NO-C bond cleavage, resulting in even-electron product ions mechanism was found to be relevant. The latter fragmentation route clearly depends on the protonation of the TEMPO-Bz-moiety itself, which motivated us to conduct (?)-ESI-MS, CID-MS/MS, and MS³ experiments of TEMPO-Bz-cross-linked peptides to further clarify the fragmentation behavior of TEMPO-Bz-peptide molecular ions. We show that the TEMPO-Bz-linker is highly beneficial for conducting FRIPS in negative ionization mode as the desired homolytic cleavage of the NO–C bond is the major fragmentation pathway. Based on characteristic fragments, the isomeric amino acids leucine and isoleucine could be discriminated. Interestingly, we observed pronounced amino acid side chain losses in cross-linked peptides if the cross-linked peptides contain a high number of acidic amino acids.

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C60负离子化学的研究进展

中性的C60是很强的缺电子体,主要和亲核试剂进行化学反应.与之不同的是C60经还原生成负离子后,由缺电子变为富含电子,具有很强的亲核性质,可与亲电试剂进行反应.由于这种电子结构的变化,C60负离子进行的反应从机理至产物均有可能与中性富勒烯不同.从而丰富了富勒烯的反应方式和富勒烯产物的类型.结合我们的工作综述了C60负离子化学的研究进展,对丰富富勒烯化学、扩展富勒烯衍生物的种类及制备方法具有一定意义.