Trans-, cis-isomers of (1,1,1-trifluoro-2,4-pentandionato)Pt(II): Volatility, structure and crystal lattice energy

Trans-and cis-complexes of platinum(II) with trifluoroacetylacetone (Pt(tfa)₂) have been prepared and studied. The synthesis and the separation technique for the isomers are described. Temperature dependencies of saturated vapor pressure measured with a spoon gauge are reported for the cis-Pt(tfa)₂ and trans-Pt(tfa)₂ complexes. The isomers show a significant difference in volatility. The structural study of Pt(tfa)₂ isomers has been performed. Molecular packings in the crystal of each isomer are considered on the base of structural data. The calculation of van der Waals energy of the crystal lattice of cis-Pt(tfa)₂ and trans-Pt(tfa)₂ was made by the atom-atom potential technique, their values being compared with experimental ΔH _T ⁰ values of sublimation for the complexes.     

Cumulated double bond systems as ligands : X. N-sulfinylaniline complexes of rhodium(I) and iridium(I) of the type [MCl(PR3)2L] in which L is coordinated via the π-NS and via the sulfur atom respectively; crystal and molecular structure of [RhCl(P-i-Pr3)2(4-MeC6H4NSO)]; determination of the 1J(103Rh15N) by 15N NMR spectroscopy

Each of the compounds [MCl(Pr₃)₂(ArylNSO)] (M = Rh^I, Ir^I; R = i-Pr, Cy: Aryl = C₆H₅, 4-MeC₆H₄, 4-ClC₆H₄, 2,4,6-Me₃C₆H₂ appears to exist as two isomers both in the solid state and in solution. The molecular and single crystal structure of one of the isomers of [RhCl(P-i-Pr)₃)₂(4-Me₆H₄NSO)] shows that the N-sulfinylaniline ligand is in the cis-configuration and coordinated to the rhodium atom via the sulfur-atom. The ligand lies in a plane which includes the rhodium atom and is in agreement with the Rh-S distance of 2.10 Å. IR results of the compounds (solid and solutions), ²¹P NMR data and ¹⁵N NMR of a ¹⁵N labelled compound, which yielded a ¹⁰³Rh¹⁵N coupling constant of 15.5 Hz, show that in the second isomer the N-sulfinylaniline ligand is probably bonded to the metal atom via the π-NS bond.The ratio of the metal-π-NS bonded isomer and the metal-S bonded isomer decreases in the order Aryl = 4-ClC₆H₄ > C₆H₅ > 4-MeC₆H₄; R = i-Pr > Cy and M = Rh > Ir. The interconversion of the two isomers is intramolecular and becomes observable on the ³¹P NMR time scale at about 40° C for M = Rh.In the case of [Ir(P-i-Pr₃)₂(4-MeC₆H₄NSO)], cyclometallation of the sul- finylaniline is observed via the ortho-carbon atom, whereas cyclometallation via P-i-Pr₃ is observed when the ortho-positions are blocked by methyl groups, e.g. when L = 2,4,6-Me₃C₆H₂NSO.     

A new biologically active molecular scaffold: crystal structure of 7‐(3‐hydroxyphenyl)‐4‐methyl‐2H‐[1,2,4]triazolo[3,2‐c][1,2,4]triazole and selective antiproliferative activity of three isomeric triazolo–triazoles

A study of three isomeric compounds containing a phenolic moiety attached to the nitrogen‐rich triazolo–triazole bicycle is presented. In the three isomers, the phenolic OH group is in the ortho, meta and para positions. The crystal structure analysis of the meta isomer (C₁₀H₉N₅O) shows that the 2H‐tautomer is present in the crystal and that the molecule adopts a substantially planar geometry. However, the conformation found in the crystal is different compared to the monoprotonated cation of the same compound previously investigated in several salts. The packing of the meta isomer is driven by the formation of strong hydrogen bonds and shows the formation of infinite planar ribbons, parallel to a, formed around 2₁ crystallographic axes. The three isomers were tested against some cancer cell lines and also against normal cell lines. The ortho isomer shows a weak antiproliferative activity, the meta isomer shows significant antiproliferative activity against some cancer lines and no activity against healthy cell lines, and the para isomer is active against all the tested cell lines.     

2′-O-Trifluoromethylated RNA – a powerful modification for RNA chemistry and NMR spectroscopy

New RNA modifications are needed to advance our toolbox for targeted manipulation of RNA. In particular, the development of high-performance reporter groups facilitating spectroscopic analysis of RNA structure and dynamics, and of RNA–ligand interactions has attracted considerable interest. To this end, fluorine labeling in conjunction with ¹⁹F-NMR spectroscopy has emerged as a powerful strategy. Appropriate probes for RNA previously focused on single fluorine atoms attached to the 5-position of pyrimidine nucleobases or at the ribose 2′-position. To increase NMR sensitivity, trifluoromethyl labeling approaches have been developed, with the ribose 2′-SCF₃ modification being the most prominent one. A major drawback of the 2′-SCF₃ group, however, is its strong impact on RNA base pairing stability. Interestingly, RNA containing the structurally related 2′-OCF₃ modification has not yet been reported. Therefore, we set out to overcome the synthetic challenges toward 2′-OCF₃ labeled RNA and to investigate the impact of this modification. We present the syntheses of 2′-OCF₃ adenosine and cytidine phosphoramidites and their incorporation into oligoribonucleotides by solid-phase synthesis. Importantly, it turns out that the 2′-OCF₃ group has only a slight destabilizing effect when located in double helical regions which is consistent with the preferential C3′-endo conformation of the 2′-OCF₃ ribose as reflected in the ³J (H1′–H2′) coupling constants. Furthermore, we demonstrate the exceptionally high sensitivity of the new label in ¹⁹F-NMR analysis of RNA structure equilibria and of RNA–small molecule interactions. The study is complemented by a crystal structure at 0.9 Å resolution of a 27 nt hairpin RNA containing a single 2′-OCF₃ group that well integrates into the minor groove. The new label carries high potential to outcompete currently applied fluorine labels for nucleic acid NMR spectroscopy because of its significantly advanced performance.

The new 2′-OCF₃ label for nucleic acid NMR spectroscopy carries high potential to outcompete currently applied fluorine labels because of significantly advanced performance.     

Halogenation of trifluoromethoxy and bis(trifluoromethoxy)benzene

Controlled chlorination of trifluoromethoxybenzene produced the mono-, di-, tri-, and tetrachloro derivatives. Two isomers were detected at each level of substitution. Exhaustive chlorination and bromination of 1,3- and 1,4-bis(trifluoromethoxy)-benzene yielded isomeric mixtures of only the disubstituted bis(trifluoromethoxy)benzenes. No hydrolysis of the -OCF₃ group was detected in any halogenations. The configuration of all the products was determined by ¹H and ¹⁹F nmr. A through-space hydrogen-fluorine coupling of 0.7 – 1.3Hz between the -OCF₃ substituent and the ortho proton was observed in all the halogenated products. The polychlorinated derivatives all exhibited good thermal stability at 200°–250°.     

Theoretical study of isomerism in protonated forms of N2O,NPO, and P2O

The geometric parameters of the isomers HN₂O⁺, HPNO⁺, and HP₂O⁺ were calculated by the nonempirical SCF/3-21G* method and their relative energies were determined with consideration of the electronic correlation in the MP3/DEHD + PS approximation. According to the calculations, protonation of N₂O, PNO, and P₂O molecules should preferably take place at the oxygen atom. Isomers with a quasilinear NNO and PNO backbone are most advantageous in HN₂O⁺ and HPNO⁺, and cyclic isomers are 60 and 30 kcal/mole less stable, respectively. On the contrary, the cyclic form is more stable for HPO ₂ ⁺ (by 10 kcal/mole). The bond at the attacked atom usually weakens (breaks) and the neighboring (opposite) bonds are strengthened in protonation. Protonation of P₂O stabilizes the cyclic isomer by 15 kcal/mole more strongly than the "open" isomer, resulting in inversion of their position on the energy scale. In the case of N₂O and PNO, the relative position of the cyclic and basic isomers virtually does not change, but the linear NPO isomer is destabliized. The stability of the cyclic isomers in comparison to the "open" isomers increases on substitution of N atoms by P atoms in both molecules of N₂O, PNO, and P₂O and in their ions HN₂O⁺, HPNO⁺, and HP₂O⁺. This tendency probably holds in subsequent transition to As and Sb atoms.Institute of New Chemical Problems, Russian Academy of Sciences, 142432 Chernogolovka. Translated from Izvestiya Akademii Nauk, Seriya Khimicheskaya, No. 1, pp. 126–134, January, 1992.     

Absolute configuration assignment of ortho,meta, or para isomers by mass spectrometry

A general method based solely on mass spectrometric techniques for the absolute configuration assignment of ortho, meta, or para isomers of acyl nitrobenzenes and derivatives is described. Instead of comparing the mass spectra of the three intact molecules of each positional isomer and investigating each one of the many sets of positional isomers, the method generalizes the effort by performing structural analysis on configurationally diagnostic fragment ions that are common for a given class of compounds. These ions must therefore retain the positional information of the parent molecules and be unequivocally distinguished. Nitrobenzoyl cations are common and stable fragment ions of most acyl nitrobenzenes and derivatives retaining the respective ortho, meta, or para configuration of the precursor molecules. The different NO₂ and CO⁺ ring alignments profoundly influence their collision-induced dissociation and bimolecular reactivity, and the isomeric 2-, 3-, and 4-nitrobenzoyl cations are found to be unequivocally distinguished using both approaches. Absolute ortho, meta, or para positional assignment by tandem MS of every isomeric molecule of the acyl nitrobenzene class and derivatives forming detectable amounts of any of those diagnostic nitrobenzoyl cations is, therefore, possible. The ability to perform absolute (non-comparative) configuration assignment using such diagnostic ions is exemplified for a single test molecule of (2R)-(−)-2-methylglycidyl 4-nitrobenzoate. The general application of this absolute MS-only method for other classes of positional isomers is discussed.     

Photo-induced isomerization of three nitrotoluene isomers: A matrix-isolation infrared spectroscopic and quantum-chemical study

The photo-induced isomerization reactions of ortho-, meta- and para-nitrotoluene molecules were investigated by matrix isolation infrared spectroscopy and quantum chemical calculations. Under UV irradiation of ortho-nitrotoluene in solid argon, the hydrogen atom transfer isomer was formed, as reported previously. It was found that the hydrogen atom transfer isomer is unstable and rearranged to its nitro isomer upon annealing. In addition, the nitrite isomer as well as its dissociation product tolyloxy radical was also formed. Only the nitrite isomers and the tolyloxy radicals were formed upon UV excitation of the meta- and para-nitrotoluene molecules. Infrared spectra and vibrational frequency assignments of the newly observed nitrite isomers and tolyloxy radicals are reported, which are supported by quantum chemical calculations.     

Theoretical study on platinabenzene and mono- and difluorinated platinabenzenes: Structure, properties, and aromaticity

The electronic structures and properties of the platinabenzene and mono- and difluorinated platinabenzenes isomers have been investigated using hybrid density functional B3LYP theory. Basic measures of aromatic character were derived from structure, molecular orbital, and nuclear independent chemical shift (NICS). An energetic criterion suggests that ortho isomer of monofluorinated and F15 isomer of difluorinated platinabenzenes enjoy conspicuous stabilization. The polarizability and molecular orbital analysis are compatible with this result. NICS values calculated at several points above the ring center fail to give the result consistent with that based on relative energy, polarizability, and molecular orbital analysis. The atoms in molecules analysis indicates a correlation between NICS (1.0) and the electron density of the ring critical point (ρ_rcp) in monofluorinated platinabenzenes. There is a similar correlation in difluorinated platinabenzenes (except for F12 and F24 isomers) between NICS (0.5) and ρ_rcp.     

The vibrational spectra and rotational isomerism of methyl ethyl sulphone-d0, -d3 and -d5

The infrared and Raman spectra of methyl ethyl sulphone, methyl ethyl sulphone-1,1,1-d₃ and methyl ethyl sulphone- 1,1,1,3,3-d₅ have been presented with vibrational assignments. Two solid states have been identified in which the molecules are either the trans or the gauche rotational isomers: one solid, the A form, occurs in cooled KBr disks used for infrared spectra while the other was found in CsI disks under ambient conditions. A mixed crystal form has also been found. In the liquid state the enthalpy of the B rotational isomer is slightly less than that of the A isomer by 90 (± 140) J mol⁻¹     

Polymethylations of bis(cyanomethyl)benzenes

o-, m- and p-bis(cyanomethyl)benzene were reacted with various quantities of methyllithium and methyliodide. Di and tetra methylations can be easily obtained in the cases of the meta and para isomers. Di and tri methylations were obtained in the reactions of the ortho isomer. The product from tri methylation of the ortho isomer cyclizes under the reaction conditions to a 3-indanone derivative.     

[Co(2,6-diaminomethylpyridine)(2-methylethylenediamine)Cl][ZnCl4]体系中几何经式异构体的合成、结构解析和稳定性研究

合成了[Co(bamp(cemp)(cmen)Cl]^2 (bamp=2,6-二甲胺基吡啶;cmen=1,2-二胺基丙烷）体系的两个经式异构体,利用一维及二维核磁振（２ＤＮＭＲ）技术,结合三元胺中吡啶环的磁屏蔽效应,对两个异构体在溶注保的结构进行了解析,对应于Ｄowex50Wx２柱色层分离的第一色带的阳离子为m2(cmen的２位受基与Ｃ１处于邻位）。第二色带的阳离子为m1.由第一色带配合物制备的单晶晶体结构解析也表明其为m2[ZnCl4].用量子化不从头计算方法,在赝热基组ＲＨＦ／ＬＡＮＬ２ＤＺ的水平上研究了该本系两上经式几何异构体的稳定性,结果表明后者较前者稳定,但差别不大,在与合成条件下异构体平衡分布一致,由计算得到的几何优化键参数与晶体结构分析结果能较好的吻合。     

Geometric isomerism in the series of fluoroalkyl-containing 1,2,3-trione 2-arylhydrazones

According to the ¹H, ¹³C, and ¹⁹F NMR data, fluoroalkyl-containing 1,2,3-trione 2-arylhydrazones in CDCl₃ exist exclusively, while in (CD₃)₂CO preferentially, as isomers in which the acyl or aroyl group is involved in intramolecular hydrogen bond. The isomer structure was assigned on the basis of the chemical shifts of the carbonyl carbon atoms and fluorine atoms and carbon-fluorine spin-spin coupling constants J _C-F. X-Ray diffraction data showed that 1,2,3-trione 2-arylhydrazones in crystal have the same structure as in CDCl₃ solution. Quantum-chemical calculations were performed to rationalize predominant formation of 1,2,3-trione 2-arylhydrazone isomers with a free polyfluoroacyl group.     

The Effect of Intramolecular Hydrogen Bond Type on the Gas-Phase Deprotonation of ortho-Substituted Benzenesulfonic Acids. A Density Functional Theory Study

Structural factors have been identified that determine the gas-phase acidity of ortho-substituted benzenesulfonic acid, 2-XC₆H₄–SO₃H, (X = –SO₃H, –COOH, –NO₂, –SO₂F, –C≡N, –NH₂, –CH₃, –OCH₃, –N(CH₃)₂, –OH). The DFT/B3LYP/cc-pVTZ method was used to perform conformational analysis and study the structural features of the molecular and deprotonated forms of these compounds. It has been shown that many of the conformers may contain anintramolecular hydrogen bond (IHB) between the sulfonic group and the substituent, and the sulfonic group can be an IHB donor or an acceptor. The Gibbs energies of gas-phase deprotonation Δ_rG⁰₂₉₈ (kJ mol^–1) were calculated for all compounds. It has been set that in ortho-substituted benzenesulfonic acids, the formation of various types of IHB is possible, having a significant effect on the Δ_rG⁰₂₉₈ values of gas-phase deprotonation. If the –SO₃H group is the IHB donor, then an ion without an IHB is formed upon deprotonation, and the deprotonation energy increases. If this group is an IHB acceptor, then a significant decrease in Δ_rG⁰₂₉₈ of gas-phase deprotonation is observed due to an increase in IHB strength and the A⁻ anion additional stabilization. A proton donor ability comparative characteristic of the –SO₃H group in the studied ortho-substituted benzenesulfonic acids is given, and the Δ_rG⁰₂₉₈ energies are compared with the corresponding values of ortho-substituted benzoic acids.     

Theoretical investigations on electronics structure and chemical bonding on iridathiabenzene and iridaoxabenzene

The electronic structure and properties of the iridathiabenzene and iridaoxabenzene isomers have been investigated using the hybrid density functional mpw1pw91 theory. The energetic aspect shows that trans-ortho-isomer is the most stable isomer. This is compatible with principles of minimum energy and minimum polarizability. Molecular orbital analysis shows a linear correlation between hardness and anisotropic polarizability values for Iridathiabenzene and iridaoxabenzene isomers. The structural and natural bond analysis (NBO) results illustrate electronic delocalization in these rings. Also, the study of non linear optical properties of these molecules indicate a good correlation between β_tot and E(HOMO) for iridathiabenzene. The results from natural bond orbital (NBO) analysis have provided insights into Ir—ligand, P—H_apical and P—H_basal bonding.     

Metastable ion and induced stable ion fragmentation of isomeric 5-methyl-3-tolyl-1,2,4-oxadiazoles

The electron ionization fragmentation patterns of 5-methyl-3-(o-, m- and p-tolyl)-1,2,4-oxadiazoles (1a—c) have been examined by metastable ion and high resolution mass spectrometry. The o-tolyl isomer loses CO and C₂H₂O from the metastable molecular ion whereas the m- and p-tolyl isomers lose only CH₃CN thus indicating a strong ortho effect in directing the fragmentation in 1a. Slight differences between o-, m- and p-tolyl isomers in the collisional activation fragmentation of stable [C₇H₆N]⁺ ions suggest that structural differences exist even after a series of extensive rearrangements of the molecular ions. Metastable ion kinetic energy (MIKE) and collisional activation (CA) spectra were very helpful in providing valuable information about many fragments.     

Microwave spectrum,structure, dipole moment and internal rotation of ethyl fluorosilane

Microwave spectra of the trans and gauche isomers of ethyl fluorosilane and their eleven isotopically substituted species have been measured. The r_s structures of the two isomers were determined from the observed moments of inertia. The molecular structures found for the two isomers in the present study are compared with those of analogous molecules. Dipole moments of the two isomers were determined by Stark-effect measurements and are also compared with those of analogous molecules. The energy difference between the trans and gauche isomers was obtained from the relative intensity measurements of the spectra and the barrier to internal rotation of the methyl group for the gauche isomer was obtained from the A—E splittings of the spectra in the first excited methyl torsional state. The V₃ value was 2775 ± 25 cal mol^?1.     

Isomerism in OBe3F3 + cation: anab initio study

Ab initio MP2/6-31G^*//HF/6-31G^*+ZPE(HF/6-31G^*) calculations of the potential energy surface in the vicinity of stationary points and the pathways of intramolecular rearrangements between low-lying structures of the OBe₃F₃ ⁺ cation detected in the mass spectra of μ₄-Be₄O(CF₃COO)₆ were carried out. Ten stable isomers with di- and tricoordinate oxygen atoms were localized. The relative energies of six structures lie in the range 0–8 kcal mol⁻¹ and those of the remaining four structures lie in the range 20–40 kcal mol⁻¹. Two most favorable isomers, aC _2v isomer with a dicoordinate oxygen atom, planar six-membered cycle, and one terminal fluorine atom and a pyramidalC _3v isomer with a tricoordinate oxygen atom and three bridging fluorine atoms, are almost degenerate in energy. The barriers to rearrangements with the breaking of one fluorine bridge are no higher than 4 kcal mol⁻¹, except for the pyramidalC _3v isomer (∼16 kcal mol⁻¹). On the contrary, rearrangements with the breaking of the O−Be bond occur with overcoming of a high energy barrier (∼24 kcal mol⁻¹). A planarD _3h isomer with a tricoordinate oxygen atom and linear O−Be−H fragments was found to be the most favorable for the OBe₃H₃ ⁺ cation, a hydride analog of the OBe₃F₃ ⁺ ion; the energies of the remaining five isomers are more than 25 kcal mol⁻¹ higher. Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 3, pp. 420–430, March, 1999.     

Redox chemistry of o- and m -hydroxycinnamic acids: A pulse radiolysis study

Radiation chemical reactions of^•OH, O^•−, N₃ ^•and e _aq ^t- witho- and m-hydroxycinnamic acids were studied. The second-orderrateconstantsforthereaction of^•OH with ortho and meta isomers in buffer solution at pH7 are 3.9±0.2 × 10⁹ and 4.4 ± 0.3 × 10⁹ dm³ mol^-1 s^-1 respectively. At pH 3 the rate with the ortho isomer was halved (1.6 ± 0.4 × 10⁹ dm³ mol^-1 s^-1) but it was unaffected in the case of meta isomer (k = 4.2±0.6 × 10⁹dm³mol^-1 s^-1). The rate constant in the reaction of N₃ ^• with the ortho isomer is lower by an order of magnitude (k = 4.9 ± 0.4 × 10⁸ dm³ mol^-1s^-1). The rates of the reaction of e _aq ^t- with ortho and meta isomers were found to be diffusion controlled. The transient absorption spectrum measured in the^•OH witho-hydroxycinnamic acid exhibited an absorption maximum at 360 nm and in meta isomer the spectrum was blue-shifted (330 nm) with a shoulder at 390 nm. A peak at 420 nm was observed in the reaction of O^bb−with theo-isomer whereas the meta isomer has a maximum at 390 and a broad shoulder at 450 nm. In the reaction of the absorption peaks were centred at 370–380 nm in both the isomers. The underlying reaction mechanism is discussed.     

Solid-state isomerisation reactions of (η-C5H4R)M(CO)2(PR3)I (M=W, Mo; R=Bu, Me; R=Ph, OPr3)

The cis and trans monosubstituted cyclopentadienyl tungsten and molybdenum complexes (η⁵-C₅H₄R)M(CO)₂(L)I (1) (M=W, R=Me, ^tBu, L=P(OⁱPr)₃, PPh₃; M=Mo, R=Me, L=PPh₃) have been synthesised and fully characterised by elemental analysis and IR and NMR spectroscopy. It was found that 1 underwent a thermal solid-state ligand isomerisation reaction and that the favoured direction of the isomerisation reaction is related to the melting points of the cis and trans isomers, i.e., with intermolecular forces in the solid state. No obvious relationship between the melting point and the metal, the ring-substituent or the ligand was observed. Crystal structure determinations of the cis and trans isomers of (η⁵-C₅H₄Me)W(CO)₂(PPh₃)I reveal that a limited amount of isomer conversion can be accommodated in the unit cell of the trans isomer, prior to crystal fragmentation. The rearrangement of the molecules within the unit cell, during isomerisation, also leads to disorder in the crystal.