Intramolecular reactions of free radicals formed from artemisinin

Two cyclic alkoxyl radicals are formed as a result of peroxide bridge scission in artemisinin. Intramolecular reactions of these radicals induce the cascade of reactions of isomerization, decyclization, and decomposition of formed free radicals. It includes 14 reactions of intramolecular free radical hydrogen transfer, 17 reactions of decyclization of alkoxyl and alkyl radicals, and 4 reactions of decomposition of alkoxyl, acyl, and carboxyl radicals. The enthalpies of these 35 reactions are calculated. Using intersection parabolas method, activation energies and rate constants of all these reactions are calculated. The most rapid reactions are selected for every intermediate free radical. © 2005 Wiley Periodicals, Inc. Int J Chem Kinet 37: 554–565, 2005     

Competition between mono-and bimolecular reactions of artemisinin alkoxyl radicals

The competition between intramolecular and bimolecular reactions of alkoxyl radicals formed from artemisinin was theoretically analyzed. The enthalpies of these reactions were calculated. The activation energies and rate constants of reactions of intramolecular hydrogen atom transfer, decyclization, and decomposition of alkoxyl radicals of artemisinin and several its derivatives, as well as the activation energies and rate constants of reactions of these radicals with the C-H, S-H, and O-H bonds in biological substrates and their analogs were calculated by the intersecting parabolas method The fastest reactions of artemisinin alkoxyl radicals were identified. The full kinetic scheme of transformation of these radicals was proposed. Artemisinin radicals with the free valence on the carbon atom are predominantly formed due to the transformation of the artemisininoxyl radicals. Published in Russian in Izvestiya Akademii Nauk. Seriya Khimicheskaya, No. 9, pp. 1502–1510, September, 2006.     

Intramolecular chain reaction of artemisinin oxidation

The intramolecular chain oxidation of artemisinin was analyzed using the parabolic model. The competition of the mono- and bimolecular peroxy radicals formed from artemisinin was considered. Artemisinin is predominantly oxidized via the intramolecular chain mechanism to form polyatomic hydroperoxides. This results in the situation when, under aerobic conditions, artemisinin is transformed from the monofunctional into polyfunctional initiator with several hydroperoxide groups. The enthalpy was calculated, and the activation energies and rate constants of the intramolecular reactions of the artemisinin peroxy radicals, as well as those of their bimolecular reactions with C-H, S-H, and O-H bonds of biological substrates and their analogs, were calculated in the framework of the parabolic model. A new kinetic scheme for artemisinin oxidation was proposed. Published in Russian in Izvestiya Akademii Nauk. Seriya Khimicheskaya, No. 2, pp. 267–275, February, 2008.     

Reactions of alkoxy and peroxy radicals formed upon the decomposition of hydroxyperoxide groups in the artemisinin derivatives

The enthalpies of intramolecular reactions of alkoxy and peroxy radicals formed from polyatomic artemisinin hydroperoxides and of their bimolecular reactions with C—H, S—H, and O—H bonds of biological substrates were calculated. The activation energies and rate constants of these reactions were calculated using the intersecting parabolas method. The decomposition of artemisinin hydroperoxides can initiate the cascade of intramolecular oxidation reactions involving radicals R·, RO·, HO·, HO₂·, and RO₂·. The main sequences of transformation of these radicals were established. The oxidative destruction of the artemisinin peroxy derivatives generates radicals RO₂·, HO·, and HO₂· in an amount of 4.5 radicals per peroxide derivative molecule on the average. The kinetic scheme of oxidative transformations of the hydroperoxide with four OOH groups and radicals formed from it was constructed using this radical as an example.     

Relative rates and approximate rate constants for inter- and intramolecular hydrogen transfer reactions of polymer-bound radicals

Measurements of relative rates and rate constants for inter- and intramolecular hydrogen transfer reactions of polymer-bound radicals are reported. The relative rate of reaction of resin-bound primary alkyl radical with tributyltin hydride is about 2 times slower than that of the benchmark reaction in solution. The data do not reveal whether this is due to a reduced rate constant or a lower concentration of tin hydride in the resin phase. Yet the difference between solid and solution reactions is small enough to be neglected, and it appears that rate constants measured in solution can be applied directly to resin-bound radicals. A resin-bound aryl radical abstracts a hydrogen atom rapidly (k = 3 x 10(6) s(-1)) from its own polymer backbone and linker, and a simplified view of the resin as a "solvent" is suggested for predicting such effects with other polymers and linkers. Rapid cyclizations of resin-bound aryl radicals will be possible, but slower cyclizations and most bimolecular reactions will be difficult due to the competing polymer/linker hydrogen transfer.     

Solvent‐Free Photooxidation of Alkanes by Dioxygen with 2,3‐Dichloro‐5,6‐dicyano‐p‐benzoquinone via Photoinduced Electron Transfer

Photooxidation of alkanes by dioxygen occurred under visible light irradiation of 2,3‐dichloro‐5,6‐dicyano‐p‐benzoquinone (DDQ) which acts as a super photooxidant. Solvent‐free hydroxylation of cyclohexane and alkanes is initiated by electron transfer from alkanes to the singlet and triplet excited states of DDQ to afford the corresponding radical cations and DDQ^??, as revealed by femtosecond laser‐induced transient absorption measurements. Alkane radical cations readily deprotonate to produce alkyl radicals, which react with dioxygen to afford alkylperoxyl radicals. Alkylperoxyl radicals abstract hydrogen atoms from alkanes to yield alkyl hydroperoxides, accompanied by regeneration of alkyl radicals to constitute the radical chain reactions, so called autoxidation. The radical chain is terminated in the bimolecular reactions of alkylperoxyl radicals to yield the corresponding alcohols and ketones. DDQ^??, produced by the photoinduced electron transfer from alkanes to the excited state of DDQ, disproportionates with protons to yield DDQH₂.     

Ab initio study of chain branching reactions involving second generation products in hydrocarbon combustion mechanisms

sec-Alkyl radicals are key reactive intermediates in the hydrocarbon combustion and atmospheric decomposition mechanisms that are formed by the abstraction of hydrogen from an alkane, or as a second generation product of n-alkyl H-migrations, C-C bond scissions in branched alkyl radicals, or the bimolecular reaction between olefins and n-alkyl radicals. Since alkanes and branched alkanes, which the sec-alkyl radicals are derived from, make up roughly 40-50% of traditional fuels an understanding of their chemistry is essential to improving combustion systems. The present work investigates all H-migration reactions initiated from an sec-alkyl radical that involve the movement of a secondary hydrogen, for the 2-butyl through 4-octyl radicals, using the CBS-Q, G2, and G4 composite methods. The resulting thermodynamic and kinetic parameters are compared to similar reactions in n-alkyl radicals in order to determine underlying trends. Particular attention is paid to the effect of cis/trans and 1,3-diaxial interactions on activation energies and rate coefficients. When combined with our previous work on n-alkyl radical H-migrations, a complete picture of H-migrations in unbranched alkyl radicals is obtained. This full data set suggests that the directionality of the remaining branched chains has a minimal effect on the rate coefficients for all but the largest viable transition states, which is in stark contrast to the differences predicted by the structurally similar dimethylcycloalkanes. In fact the initial location of the secondary radical site has a greater effect on the rate than does the directionality of the remaining alkyl chains. The activation energies for secondary to secondary reactions are much closer to those of the secondary to primary H-migrations. However, the rate coefficients are found to be closer to the corresponding primary to primary reaction values. A significant ramification of these results is that there will be multiple viable reaction pathways for these reactions instead of only one dominant pathway as previously believed.     

Rate constants for reactions of alkyl radicals with water and methanol complexes of triethylborane

Reactions of secondary alkyl radicals with triethylborane and several of its complexes were studied. The H-atom transfer reactions from Et3B-OH2 and Et3B-OD2 were suppressed by addition of pyridine to the reaction mixture. Rate constants for reactions of secondary alkyl radicals with triethylborane and its complexes with water, deuterium oxide, methanol, and THF at ambient temperature were determined by radical clock methods. Cyclization of the 1-undecyl-5-hexenyl radical and ring opening of the 1-cyclobutyldodecyl radical were evaluated as clock reactions. The cyclobutylcarbinyl radical ring opening had the appropriate velocity for relatively precise determinations of the ratios of rate constants for H-atom transfer trapping and rearrangement, and these ratios combined with an estimated rate constant for the cyclobutylcarbinyl radical ring opening gave absolute values for the rate constants for the H-atom transfer reactions. For example, the triethylborane-water complex reacts with a secondary alkyl radical in benzene at 20 degrees C with a rate constant of 2 x 10(4) M(-1) s(-1). Variable temperature studies with the Et3B-CH3OH complex in toluene indicate that the hydrogen atom transfer reaction has unusually high entropic demand, which results in substantially more efficient hydrogen atom transfer trapping reactions in competition with radical ring opening and cyclization reactions at reduced temperatures.     

Unusual selectivities of radical reactions. Experimental studies on alkyl versus phenoxyl reaction systems

Radical reactions involving two or more intermediates and many mutual reaction channels may lead to the specific formation of one cross-reaction product if one species is rather persistent and if transient and persistent species are produced with equal rates. A previous kinetic analysis of the phenomenon revealed that the concentrations of the intermediates and the selectivities of product formation depend critically on the relative initiation rates. The present experimental ESR studies on systems involving simultaneously generated phenoxyl radicals as persistent and alkyl radicals as transient species confirm the predicted behavior. They also lead to absolute rate constants for reactions of alkyl with phenoxyl radicals and for hydrogen atom transfer from phenols to alkyl radicals.     

Reactions of mono- and bimolecular hydrogen transfer in alkyl radicals: analysis using the parabolic model and density functional calculations

Experimental data on monomolecular hydrogen transfer in the reactions of the type RC^·H(CH₂)_nCH₂R¹ RCH₂(CH₂)_nC^·HR¹ (n = 2—4, R and R¹ are alkyl substituents) were analyzed using the parabolic model (PM). The parameters characterizing this class of reactions were calculated. Isomerization of alkyl radicals via cyclic transition states (TS) is characterized by the following energy barriers to thermoneutral reaction E _e0: 53.5, 65.4, and 63.2 kJ mol^–1 for the six-, five-, and seven-membered TS, respectively. The E _e0 energy and the strain energy change in parallel in the series of cycloparaffins C_nH_2n. Density functional calculations of intramolecular hydrogen transfer in the n-butyl and n-pentyl radicals and of the bimolecular hydrogen abstraction from the ethane molecule by the ethyl radical were performed. The activation energies of the intra- and intermolecular hydrogen transfer were compared. The parameters of the PM were compared with the interatomic distances in the reaction center of the TS calculated by the density functional method.     

Hydroxyl mechanism of the antimalarial effect of artemisinin and its analogs

Kinetic schemes for the intramolecular oxidation of four artemisinin analogs, which are used as drugs against malaria, were developed. Each stage of the kinetic scheme is characterized by the enthalpy, activation energy, and rate constant calculated using the model of intersecting parabolas. The competition of mono- and bimolecular radical reactions was taken into account when developing the schemes. The hydroperoxide groups are formed as a result of the intramolecular oxidation of these compounds and generate free radicals in the reaction with Fe^II. Among these free radicals, hydroxyl radicals play the key role, since their yield (n _OH) correlates with the antimalarial activity of the peroxide compound. The efficiency of the drug (index IC₅₀) exponentially depends on n _OH and is expressed by the formula IC₅₀(Artemisinin)/IC₅₀(Compound) = 1.54·10⁻⁶exp(3.9n _OH). The elementary reactions resulting in the generation of hydroxyl radicals are considered. It is supposed that DNA of a malaria parasite is the main biological target for hydroxyl radicals.     

Measurement of diffusion coefficients for diffusion-controlled reactions

The Taylor dispersion technique has been used to measure the diffusion coefficients of nine compounds in dilute solution in isopropanol at 300 K. These compounds correspond, by the difference of a single hydrogen atom, to nine free radicals, for which the rate constants for bimolecular (termination) reactions have been previously measured under the same conditions by e.s.r. Comparison of the two sets of results show the termination reactions to be essentially diffusion-controlled, and, assuming no activation-energy effect, interaction parameters for the termination reactions are calculated and discussed.     

Use of the additivity principle in the calculation of the free energy of activation of radical reactions

The free energy of activation of bimolecular radical substitution reactions can be calculated from the increment values of the transition state. The latter are calculated, starting from the general principle of the additivity of thermodynamic functions in the transition state. The values of the reaction rate constants calculated from them are in satisfactory agreement with experimental data. The values of the free energy of activation can be used as characteristics of the relative activity of the radicals and molecules in bimolecular substitution reactions.     

The reactivity of ketyl and alkyl radicals in reactions with carbonyl compounds

A parabolic model of bimolecular radical reactions was used for analysis of the hydrogen transfer reactions of ketyl radicals: >C·OH+R¹COR²→>C=O+R¹R²C·OH. The parameters describing the reactivity of the reagents were calculated from the experimental data. The parameters that characterize the reactions of ketyl and alkyl radicals as hydrogen donors with olefins and with carbonyl compounds were obtained: >C·OH+R¹CH=CH₂→>C=O+R¹C·HCH₃; >R¹CH=CH₂+R²C·HCH₂R³→R²C·HCH₃+R²CH=CHR³. These parameters were used to calculate the activation energies of these transformations. The kinetic parameters of reactions of hydrogen abstraction by free radicals and molecules (adelhydes, ketones, and quinones) from the C−H and O−H bonds were compared. Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 11, pp. 2178–2184, November, 1998.     

An important role of intramolecular free radical reactions in antimalarial activity of artemisinin and its analogs

The kinetic schemes of intramolecular reactions of five analogs of artemisinin were built. The method of intersecting parabolas was used for the calculation of activation energies and rate constants of each elementary step of these schemes. The competition between monomolecular and bimolecular free radicals was taken into account. It was evidenced that the intramolecular oxidation of these compounds proceeds as a cascade of consecutive free radical reactions with the formation of hydroperoxide groups. The latter decompose via reactions with the Fe(II) complexes generating free radicals. Among the radicals formed, the hydroxyl radical was proved to play the key role. A correlation between the yield of hydroxyl radicals n(OH) and antimalarial activity of compounds (IC(50)) was observed. The dependence of index IC(50) on n(OH) is linear in the logarithmic coordinates: ln[IC(50)(Artemisinin)/IC(50)(Compound)] = -14.10 + 3.85 ×n(OH). The proposed scheme explains and demonstrates a strong dependence of the antimalarial effectiveness of a drug on the chemical structure.     

Density functional theory investigation of competitive free-radical processes during the thermal cracking of methylated polyaromatics: estimation of kinetic parameters

Density functional B3LYP and BH&HLYP calculations with the 6-31G** basis set have been performed to investigate elementary reactions playing an important role in the pyrolysis of 1-methylnaphthalene. The pathways describing the destiny of the main radicals, H, methyl, hydromethylnaphthyl and methylnaphthyl, have been studied. At low temperature, addition of H atoms on the aromatic ring is favored over hydrogen abstraction. Except at low temperature (below 400 K), the hydromethylnaphthyl radical undergoes preferentially a loss of hydrogen rather than a bimolecular hydrogen transfer with methylnaphthalene or addition reaction on methylnaphthalene forming a hydrogenated dimer. In the range 400-750 K, the formation of methane by hydrogen abstraction of methyl radical on methylnaphthalene is predominant compared to the formation of hydrodimethylnaphthalenes by addition reaction. Rate constants of reactions describing the formation of heavy products like methyldinaphthylmethanes or dimethylbinaphthalenes have been calculated and discussed. They are also compared to recombination reactions from the literature. Rate constants of these reactions have been computed using transition state theory and can be integrated in kinetic radical schemes of methylated polyaromatic compounds pyrolysis from geological to laboratory conditions.     

Hydroxyl mechanism of the antimalarial action of dimeric analogues of artemisinin

Kinetic schemes of intramolecular oxidation have been constructed for four model compounds containing two artemisinin residues. Each step of the kinetic scheme has been characterized by an enthalpy of reaction. The activation energy and rate constant have been calculated using the intersecting-parabolas model. The competition between unimolecular and bimolecular reactions has been taken into account in constructing the kinetic scheme. In the case of H atom abstraction from the C-H bond in the α-position with respect to the hydroperoxyl group, the fragmentation of the molecule concerted with H abstraction has been taken into consideration. The intramolecular oxidation of the model compounds yields hydroperoxide groups, which, reacting with Fe(II), generate free radicals. Among the latter, hydroxyl radicals play the key role, as in the case of artemisinin. It is the number of hydroxyl radicals generated by the artemisinin analogues (n _OH) that correlates with their antimalarial activity. The relationship between the effectiveness of the dimeric analogues, which is characterized by IC ₅₀, and n _OH is linear and, in the n _OH = 3–7 range, is given by the formula IC ₅₀(artemisinin)/IC ₅₀(analogue) = 1 + 0.27/(n _OH ? 3.17).     

Kinetic investigations on the photopolymerization of di- and tetrafunctional methacrylic monomers in polymeric matrices. ESR and calorimetric studies. II. Postpolymerization reactions

The reaction kinetics in the dark of photopolymerized mono- and dimethacrylates in a polymeric binder has been studied. Electron spin resonance spectroscopy (ESR) provided useful information regarding the nature of the radicals involved in postpolymerization reactions. Computer simulations were performed to study the decay of the propagating radicals by considering normal bimolecular termination and transfer reactions of the radicals to the binder. Differences were found in the termination reactions for mono- and difunctional monomers when they were photopolymerized in a solid medium. Absolute kinetic constants for H-transfer reaction with the binder, relative kinetic rate constants for radical–radical coupling, and average lifetimes for the radicals have been calculated. © 1998 John Wiley & Sons, Inc. J Polym Sci A: Polym Chem 36: 2785–2791, 1998     

Multi‐faceted Reactivity of Alkyltellurophenols Towards Peroxyl Radicals: Catalytic Antioxidant Versus Thiol‐Depletion Effect

Hydroxyaryl alkyl tellurides are effective antioxidants both in organic solution and aqueous biphasic systems. They react by an unconventional mechanism with ROO^. radicals with rate constants as high as 10⁷ M ^?1 s^?1 at 303 K, outperforming common phenols. The reactions proceed by oxygen atom transfer to tellurium followed by hydrogen atom transfer to the resulting RO^. radical from the phenolic OH. The reaction rates do not reflect the electronic properties of the ring substituents and, because the reactions occur in a solvent cage, quenching is more efficient when the OH and TeR groups have an ortho arrangement. In the presence of thiols, hydroxyaryl alkyl tellurides act as catalytic antioxidants towards both hydroperoxides (mimicking the glutathione peroxidases) and peroxyl radicals. The high efficiency of the quenching of the peroxyl radicals and hydroperoxides could be advantageous under normal cellular conditions, but pro‐oxidative (thiol depletion) when thiol concentrations are low.     

Mechanism of the bimolecular reactions of ethylene and propylene

Rate constants for the bimolecular reactions of ethylene and propylene to form radicals and to form cyclobutane or its derivatives have been calculated using thermodynamic and kinetic data. Comparison of these rates with the kinetics of the thermal reactions of ethylene and propylene show that cyclobutane and its derivatives are probably not important intermediates in the processes forming radicals.