PROFLAVINE MEDIATED PHOTOINACTIVATION OFBACTERIOPHAGE φX174 AND ITS ISOLATED DNA: EFFECTS OF AGENTS MODIFYING VARIOUS PHOTOCHEMICAL PATHWAYS

Abstract. Thiols and disulfides protect both φX174 phage and its isolated DNA from the lethal action of proflavine plus light. The protective ability of these compounds appears to be attributed to the -SH or the -S-S- group and the property to interact with the proflavine-phage DNA complex. The phage inactivation efficiency per proflavine bound to DNA is reduced by 50 to 30% upon addition of cysteine or cystamine. Substances that affect the lifetime of singlet oxygen modify the rate of phage photoinactivation in the presence of proflavine; the inactivation rate is decreased by N^-₃ and increased by D₂O. Irradiation under N₂ atmosphere markedly decreases the phage photosensitization by proflavine. Irradiation with monochromatic light of 440 nm is less efficient than irradiation with light of 440 nm plus 360 nm, and the difference is more pronounced in N₂ than in air. These results are discussed in relation to various possible photochemical pathways.     

PHOTODYNAMIC EFFECTS OF PROFLAVINE ON BACTERIOPHAGE φ times 174 AND ITS ISOLATED DNA

Abstract. Proflavine-mediated photoinactivation of φ times 174 phage and its isolated DNA was studied under identical irradiation conditions. The inactivations followed single-hit kinetics and a linear relationship was obtained in reciprocal plots of the inactivation rates vs the proflavine concentrations for both phage and isolated DNA. The phage photoinactivation rate was increased with an increase in the amount of proflavine bound to the phage DNA in a strong binding range (0.01-0.04 proflavine/ nucleotide) as the total proflavine concentration was increased or the ionic strength decreased. Further, a phage-specific factor was also found to affect the inactivation rate. The photodynamic treatment induced mutations in three phage strains from "amber" to "wild type" at a mutation rate per lethal hit of 0.3 times 10^-5 to 2.6 times 10^-5. In contrast to phage infectivity, the φ times 174 DNA infectivity was measurable only at a high multiplicity of infection, and its photoinactivation occurred only at high proflavine concentrations. The photoinactivation rate was enhanced either with a decrease in the multiplicity of infection or with the use of spheroplasts of recA mutants strains. The results are discussed in terms of the nature of and possible repair mechanisms of photodynamically induced lesions in φ times 174 phage DNA.     

A FILTER BINDING ASSAY FOR CHARACTERIZATION OF ANTIBODIES TOWARDS DAMAGED DNA

A nitrocellulose filter binding assay was used to characterize rabbit antibodies specific for UV-irradiated DNA. The dissociation constant for the UV-DNA-antibody complex was found to be 4.2 × 10⁻¹² M. No significant binding to unirradiated DNA was observed. Unlabelled single-stranded and double-stranded DNA competed with equal efficiency for the radioactively labelled antigen (UV-irradiated φX174 DNA). The antibodies also bound to OsO₄-treated DNA, suggesting that these polyclonal antibodies also recognize minor photoproducts. Caffeine efficiently decreased binding of the antibodies to UV-irradiated DNA.     

SEDIMENTATION ANALYSIS OF DNA PHOTOOXIDIZED IN THE PRESENCE OF THIOPYRONINE

Abstract. Illumination of single-stranded φ×174 phage DNA with visible lightλ > 500 nm) in the presence of the sensitizer thiopyronine results in both chain scissions detectable by velocity sedimentation in neutral medium and in alkali-labile bonds which yield secondary strand breaks after alkaline treatment. Compared with the generation of primary strand breaks, the formation of alkali-labile sites seems to be the predominant reaction.
Photodynamic treatment of homogeneous double-stranded Ta, phage DNA leads to changes in the overall conformation of DNA as revealed by an initial increase of the sedimentation coefficient. The simultaneous occurrence of different effects (decrease of molecular weight, increase of effective DNA flexibility) is particularly evident from changes in the sedimentation coefficient distribution. The fact that both processes influence the sedimentation behaviour questions the common procedure of calculating double-strand break numbers from sedimentation coefficient distributions on the basis of s#-M relations which are valid for intact DNA only.
Photooxidized double-stranded DNA exhibits an increased sensitivity against shear forces.     

DNA SYNTHESIS ON ØX174 TEMPLATE DAMAGED BY PROFLAVINE and LIGHT TREATMENT

Abstract— Onprimed–0X174 single-stranded DNA photosensitized in the presence of proflavine, Escherichia coli DNA polymerase terminates DNA synthesis at the nucleotide preceding a guanine residue. This chain termination is visualized on a DNA sequencing gel. Our results show that (i) the major targets of the action of proflavine in the DNA are the guanine residues, (ii) there seems no preferential alteration of some residues and (iii) the rate of alteration is very high. We show that the loss of infectivity of 0X174 mediated by the photodynamic action of proflavine can be explained by a block in the DNA polymerisation reaction.     

DNA Binding Properties and Cytotoxic Activities of Two Trinuclear Ruthenium（Ⅱ） Polypyridyl Complexes

The interactions between two trinuclear Ru（II） complexes and calf thymus DNA（CT DNA） were studied via absorption spectroscopy, reverse salt titrations, binding stoichiometry, DNA melting experiments, as well as viscosity measurement. The results indicate that complexes 1 and 2 bind to DNA via the interaction of the planar π-delocalized system of the complexes with intrinsic binding constants of 4.18 × 10^5 and 3.85 × 10^6 L/tool, respectively, and non-electrostatic binding free energy makes a predominant contribution to the binding free energy. The in vitro cytotoxic activity of complexes 1 and 2 was evaluated by the MTT[3-（4,5-dimethylthiazol-2-yl）-2,5-diphenyl- 2H-tetrazolium bromide] method. Complex I shows higher anticancer potency than complex 2 against four tumor cell lines. Further mechanism study indicates that complexes 1 and 2 can cause cell cycle arrest in the G2/M phase.     

PRODUCTION OF BREAKS IN SINGLE- AND DOUBLE-STRANDED FORMS OF BACTERIOPHAGE øx174 DNA BY PROFLAVINE AND LIGHT TREATMENT

Abstract— Irradiation at 440 + 360 nm and a fluence rate of 3.8 kJm^-2 min^-1, of both complexes previously formed between proflavine and either øX circular single-stranded (ss) DNA or øX supercoiled duplex (RFI)DNA, induces single-strand scissions in the two DNAs under consideration. Linear øXSS DNA molecules are detected by sedimentation through alkaline sucrose gradients. After treatment of the øXRFI DNA, however, the degree of degradation is the same whether it is measured under neutral or alkaline conditions, indicating that alkaline-labile bonds are not created; moreover, double-strand breaks can only be detected after accumulation of single-strand breaks. In addition to the amount of proflavine bound to the DNA and the duration of irradiation, the following factors are shown to influence the nicking activity of the treatment: (1) the DNA structure (the øXRFI DNA is much more sensitive than the øXss DNA); (2) the ionic strength of the medium during irradiation (a high value of 0.5 leads to a markedly increased efficiency); (3) the addition of cysteamine (this latter compound decreases the reaction rate) and (4) the irradiation wavelength (after irradiation at 440 nm alone, the reaction occurs at a reduced rate and is sensitive to NaN₃). The kinetics of the nicking reaction does not follow a single-hit curve showing that at least one primary lesion occurs prior to strand breakage. On the other hand, strand scission cannot be detected after irradiation of the proflavine-DNA complexes at the low fluence rate causing a decrease in the infectivity of both øXSS and øXRFI DNAs. Similarly. the sedimentation pattern of the DNA extracted from treated øx174 phages 99.9% inactivated, is identical to that of the control ss DNA, although more drastic treatments are susceptible to induce single strand breaks inside the phage head. Finally, the unknown lesion (s) that is biologically important does not prevent the treated DNAs from penetrating into the hostcells.     

DRAMATIC IMPROVEMENTS IN VIRAL INACTIVATION WITH BROMINATED PSORALENS, NAPHTHALENES AND ANTHRACENES

Amino or polyamino derivatives of naphthalene (N-H), anthracene (A-H) and 8-alkoxypsoralen (PSR-H) were prepared along with their monobrominatcd analogs (N-Br, A-Br and PSR-Br). The ammonium salts of these compounds are all water soluble and bind strongly to calf thymus DNA and to λ phage, a double-helical DNA, protein-coated virus. Binding of the sensitizer to DNA occurs, presumably by a mixture of hydrophobic, intercalative and electrostatic interactions. Relative binding constants to calf thymus DNA and to λ phage were measured by the cthidium bromide fluorescence quenching assay. In general the brominated analogs bind more tightly to calf thymus DNA and to the virus than to the nonhalogenated analogs. It is demonstrated that the brominated aromatics are much more effective at inactivating λ phage upon photoactivation (λ 310 or 350 nm) than are their nonbrominated analogs. At identical sensitizer concentrations (by weight) and light flux N-Br, A-Br, and PSR-Br produce 5–6 more logs of viral inactivation than their nonbrominated counterparts (N-H, A-H and PSR-H, respectively). The bromine effect may originate from light-induced electron transfer and subsequent cleavage of the C-Br bond of the sensitizer radical anion bonds to form aryl radicals. Singlet oxygen cannot be responsible for the viral inactivation because the brominated sensitizers are equally effective in the presence and absence of oxygen. Dithiothreitol does not protect λ phage from light-induced inactivation by the brominated sensitizer thereby demonstrating that the photogenerated reactive intermediates responsible for the effect are complcxed to the virus and are not generated free in solution.     

LIGHT-INDUCED FREE RADICALS IN ORIENTED DNA-PROFLAVINE COMPLEXES

Abstract— Oriented wet DNA-proflavine complexes were illuminated with visible light, Λ > 395 nm, at 77 K, in the presence or absence of oxygen. The electron paramagnetic resonance spectra at 77 K and low microwave power (3 μ W) indicated formation of anionic free radicals in thymine and cationic free radicals, probably in guanine, identical to those induced by y rays at 77 K in similar samples of pure DNA.
The free-radical formation rate showed a quadratic dependence on light intensity, indicating a biphotonic mechanism. The proflavine triplet spectrum was observed during illumination. If the exciting light includes wavelengths below 390 nm, significant amounts of hydrogen addition radicals in thymine are found.     

氮杂大环铈(Ⅲ)配合物与pUC19 DNA的相互作用

以一种1,4,7,10,13,16,19,22,25,28,31-十一氮杂2,5,8,11,14,17,20,23,26,29,32-十一酰基-环三十三烷的衍生物（CYC）为配体,在溶液中和Ce（Ⅲ,M）离子形成氮杂大环铈配合物（M-CYC）作为仿生催化剂,通过紫外光谱法、荧光光谱法和凝胶电泳法研究了M-CYC配合物与DNA的相互作用. 结果表明,M-CYC与小牛胸腺DNA（CT DNA）以嵌插方式相互作用,在pH = 8.16的缓冲体系中,其结合常数K_b = 2.0×10⁴ L/mol. 凝胶电泳结果表明,当自由基捕捉剂存在时,M-CYC可将超螺旋pUC19 DNA切割为缺刻型DNA,其切割方式为水解切割.     

Interaction of proflavine with DNA studied by colloid surface enhanced resonance Raman spectroscopy

The interaction of the mutagenic highly fluourescing proflavine (3,6-diaminoacridine: PF) dye with calf thymus DNA has been studied by Surface Enhanced Resonance Raman Scattering (SERRS). Since the Ag-colloids almost completely quenche the strong fluorescence it is possible to obtain excellent vibrational spectra in a wide frequency range providing valuable information about the intercalation. The intercalation does not affect the vibrational frequencies of the proflavine dye. On the other hand, intensity changes are observed in some of the ring- and NH₂-modes of proflavine upon intercalation. This Raman hypochromism is characteristic for ring stacking interactions and in the SERRS spetroscopy for an additional effects of the dye orientation to the surface.     

Photodynamic properties of dipeptide-modified hypocrellin B derivatives: the role of tyrosine and tryptophan groups

Three long-wavelength absorbing dipeptide-modified hypocrellin B (HB) derivatives, Gly-HB, Tyr-HB, and Trp-HB, were prepared for application in photodynamic therapy (PDT). Their abilities to produce free radicals and singlet oxygen were compared in detail with EPR technique, and their binding interactions with calf thymus DNA (CT DNA) were studied by absorption spectra and DNA melting temperature measurements. Tyr-HB and Trp-HB distinguish themselves from Gly-HB and HB remarkably by their significantly improved efficiencies to generate semiquinone anion radicals, superoxide anion radicals, and hydroxyl radicals, as well as their affinity to CT DNA, as the result of the electron-donating properties and intercalating abilities of tyrosine and tryptophan groups. Tyr-HB and Trp-HB show remarkably enhanced photodamage capabilities on CT DNA than their parent HB in aerobic conditions. Moreover, they possess moderate photodamage abilities on CT DNA even in anaerobic conditions, indicating the role of Type I mechanism in their photodynamic behaviors.     

Binding mode of proflavine to DNA probed by polarized light spectroscopy

It is well known that proflavine binds to DNA. Here we investigate the binding mode of proflavine to native DNA using absorption, circular dichroism (CD), and linear dichroism (LD) spectroscopy as well as by fluorescence techniques. The observed changes of proflavine upon complexation with DNA can be summarized as a red shift and hypochromism in the absorption spectrum. The negative LD^r in the proflavine absorption region has a magnitude comparable to or larger than that of the DNA absorption region, confirming the intercalative binding mode of proflavine to DNA. Saturation of the LD spectrum in the proflavine absorption region at R = 0.25 and a decrease in the fluorescence intensity provide further evidence of intercalation. Furthermore, the coupling of electric transition of intercalated proflavine is observed. Although proflavine has been reported to position itself along the DNA stem at high [proflavine]/[DNA base] ratios, the spectral characteristics, which include a clear isosbestic point in the absorption spectrum and proportionality in the LD magnitude in the proflavine absorption region, do not show any possibility of exterior binding.     

Raman spectroscopic study of microcosmic photodamage of the space structure of DNA sensitized by Yangzhou haematoporphyrin derivative and Photofrin II

After calf thymus DNA has been photodamaged by Yangzhou haematoporphyrin derivative (YHPD) or Photofrin II, the Raman characteristic frequencies and the intensities of the bands assigned to various groups of the components of DNA change considerably. As a result of damage, homogeneous B-form calf thymus DNA becomes a mixture containing: (1) modified B-form DNA, which is shorter than the original because of double-helical DNA scission; (2) single-stranded DNA due to the breakage of some H-bonds and the lack of some bases, etc.     

PHOTO-INDUCED BINDING OF SULFANILAMIDE TO CELLULAR MACROMOLECULES

Abstract— Ultraviolet light (A > 295 nm) induced binding of sulfanilamide to cellular macromoleculcs has been examined. It was found that the drug bound irreversibly to native DNA, and complexes containing one drug molecule per 80 nucleotides were obtained after 60 min of irradiation under anaerobic conditions. Oxygen reduced this binding significantly. More drug was bound to RNA and heat denatured DNA under identical conditions. The binding of sulfanilamide to DNA was found to induce nicking of circular closed plasmid DNA and cross-linking of calf thymus DNA. Oxygen significantly decreased nicking and cross-linking of DNA. Irradiation of sulfanilamide and human serum albumin resulted in covalent binding of the drug to the protein and a concomitant increase in protein crosslink-ing. While oxygen decreased covalent binding, crosslinking increased under aerobic conditions. These reactions may be important in the photosensitization caused by sulfanilamide.     

4-Terf-Butylperoxymethyl-9-Methoxypsoralen as Intercalating Photochemical Alkoxyl-Radical Source for Oxidative DNA Damage

We describe the synthesis of a novel psoralen peroxide 1 that generates on irradiation (350 nml alkoxyl radicals, namely tert-butoxyl radicals, as confirmed by electron spin resonance studies with the spin trap 5,5-dimethyl-pyrroline-N-oxide. The radical source intercalates into the DNA, which has been demonstrated by linear-flow-dichroism measurements. Thus, the alkoxyl radicals are formed advantageously directly in the DNA matrix. In supercoiled pBR322 DNA, the generation of strand breaks by the photochemically or metal-catalyzed generated alkoxyl radicals is demonstrated. Photosensitization by the psoralen chromophore was excluded because similar substances that do not release radicals caused no DNA damage, nor were the photoproducts of the peroxide 1 active. With calf thymus DNA, 8-oxoGua and small amounts of guanidine-releasing products, e.g. oxazolone, were observed. However, in these reactions the photoproduct also displayed some DNA-oxidizing capacity.     

Study on DNA damage induced by CdSe quantum dots using nucleic acid molecular “light switches” as probe

The calf thymus DNA (ctDNA) damage induced by water-soluble CdSe quantum dots (QDs) was investigated using nucleic acid molecular “light switches” as probe. It was found that little ctDNA was damaged by CdSe QDs without UV irradiation. However, under UV irradiation, ctDNA was nicked by CdSe QDs very clearly. The mechanism of ctDNA damage was also discussed. The results strongly suggested that the ctDNA damage caused by CdSe QDs was not due to photo-induced liberation of Cd²⁺, but due to the production of free radicals and reactive oxygen species.     

IN SITU GENERATION OF PSORALENS BY PHOTOLYSIS OF WATER-SOLDBLE PRECURSORS

Abstract— The poor water solubility of typical photochemotherapeutic psoralens restricts their utility in aqueous solutions and commonly requires the use of organic co-solvents in photobiological studies. This paper describes the preparation of readily water-soluble "pre-psoralens", (Z)-3-[5-(4,6-dimethoxy)benzofuranyl]propenoic acid (3) and (Z)-3-[5-(6,7-dimethoxy)benzofuranyl]propenoic acid (4), and their novel photocyclization in aqueous media to give 5-methoxypsoralen (5-MOP) and 8-methoxypsoralen (8-MOP), respectively. Quantum efficiencies, measured at 308 nm for the cyclization, are 12. 1 × 10^-3 for 3 → 5-MOP and 2.7 × 10^-3 for 4 → 8-MOP. 5-Methoxyisopsoralen (5-MOiP, 5) is a side product from the photolysis of 3. Photocross-linking of calf thymus DNA is effected when the "pre-psoralens" are irradiated with 308 or 355 nm (3 only) light.     

一个新型钌(Ⅱ)配合物的合成、表征与DNA的键合及溶剂变色性质

合成和表征了1个新的钌(Ⅱ)配合物[Ru(bpy)₂(dpapz)](ClO₄)₂,其中bpy=2,2'-联吡啶,dpapz=联吡啶并[3,2-a:2,'3-'c]-6-氮杂-吩嗪.通过紫外可见光谱、荧光光谱、与溴化乙锭的竞争键合实验和粘度测量研究了该配合物与小牛胸腺DNA的键合性质,并研究了该配合物的紫外可见光谱和荧光光谱的溶剂变色性质.结果表明,该配合物是具有键合常数Kb=6.9×10⁵L/mol(50mmol/LNaCl)的DNA嵌入键合试剂和优良的荧光溶剂传感分子.     

Different inhibition characteristics of intracellular transglutaminase activity by cystamine and cysteamine

The treatment of cystamine, a transglutaminase(TGase) inhibitor, has beneficial effects in several diseases including CAG-expansion disorders and cataract. We compared the inhibition characteristics of cystamine with those of cysteamine, a reduced form of cystamine expect-ed to be present inside cells. Cystamine is a more potent inhibitor for TGase than cysteamine with different kinetics pattern in a non-reducing condition. By contrast, under reducing conditions, the inhibitory effect of cystamine was comparable with that of cysteamine. How-ever, cystamine inhibited intracellular TGase activity more strongly than cysteamine despite of cytoplasmic reducing environment, suggest-ing that cystamine itself inhibits in situ TGase activity by forming mixed disulfides.