Controlled dimerization of artificial membrane receptors for transmembrane signal transduction

In biology, membrane-spanning proteins are responsible for the transmission of chemical signals across membranes, including the signal recognition-mediated conformational change of transmembrane receptors at the cell surface, and a trigger of an intracellular phosphorylation cascade. The ability to reproduce such biological processes in artificial systems has potential applications in smart sensing, drug delivery, and synthetic biology. Here, an artificial transmembrane receptors signaling system was designed and constructed based on modular DNA scaffolds. The artificial transmembrane receptors in this system are composed of three functional modules: signal recognition, lipophilic transmembrane linker, and signal output modules. Adenosine triphosphate (ATP) served as an external signal input to trigger the dimerization of two artificial receptors on membranes through a proximity effect. This effect induced the formation of a G-quadruplex, which served as a peroxidase-like enzyme to facilitate a signal output measured by either fluorescence or absorbance in the lipid bilayer vesicles. The broader utility of this modular method was further demonstrated using a lysozyme-binding aptamer instead of an ATP-binding aptamer. Therefore, this work provides a modular and generalizable method for the design of artificial transmembrane receptors. The flexibility of this synthetic methodology will allow researchers to incorporate different functional modules while retaining the same molecular framework for signal transduction.

An artificial transmbrane signal transducer was developed through the chemical input-mediated dimerization of artificial DNA transmembrane receptors and the subsequent activation of a cascade of events inside the vesicles.     

Photosensitive signal transduction induces membrane hyperpolarization in Paramecium bursaria

The protozoan ciliate Paramecium bursaria exhibits membrane hyperpolarization in response to photostimulation, accompanied with an increased swimming speed. The external addition of cyclic nucleotide phosphodiesterase (PDE) inhibitors, either theophylline (1,3-dimethylxanthine) or 3-isobutyl-1-methylxanthin (IBMX), increased in both amplitudes of the membrane hyperpolarization and the increase in swimming speed. Moreover, the addition of membrane permeable cyclic nucleotide analogs, either 8-bromo-adenosine 3',5'-cyclic monophosphate (Br-cAMP) or 8-Br-guanosine 3',5'-cyclic monophosphate (Br-cGMP), increased these amplitudes. On the other hand, the addition of l-cis-diltiazem, known to block the conductance of cyclic nucleotide-gated channels, partially decreased both amplitudes of the membrane hyperpolarization and the increase in swimming speed. An enzyme immunoassay of cellular cyclic nucleotide contents showed that photostimulation induced a rapid increase in adenosine 3',5'-cyclic monophosphate (cAMP), but little increase in guanosine 3',5'-cyclic monophosphate (cGMP), raising the possibility that a rapid increase in cAMP mediates the light-induced hyperpolarization in P. bursaria.     

A multielectrode microcompartment culture platform for studying signal transduction in the nervous system

This paper describes the design, fabrication, and characterization of a microfabricated compartmented culture system (micro-CCS) useful for electrophysiological signaling studies in cultured neurons. The focus of the paper is the process of interfacing the micro-CCS with cultured neurons and to demonstrate the applicability of the system for biochemical-mediated electrophysiological studies. Moreover, we show that we can record action potentials from cultured neurons through the extracellular compartmented application of elevated levels of K(+) ions. Finally, we show that we can isolate the electrophysiological effects of the sodium channel blocker tetrodotoxin in one of the compartments of a two compartment culture while recording electrophysiological data from both compartments.     

Selective transfer of energy through an alamethicin-doped artificial lipid membrane studied at discrete molecular level

In this study we present novel evidence that strengthens the paradigm of selective transfer of energy mediated by a random gating of ion channels. Specifically, we investigated the spectral response of a noisy artificial biomembrane whose electrical properties were largely dictated by embedded alamethicin oligomers. In this respect, we first evaluated experimentally the linear transfer function of the system via the white-noise analysis method. We prove that such a system displays specific ranges of frequency over which input signals pass preferentially, depending on their spectral content and the holding potential across the artificial bilayer which contains alamethicin. By employing voltage-driven periodic stimulation of alamethicin oligomers, we demonstrate that overall response of the system obeys qualitatively the predictions inferred from the transfer function analysis of it. These results emphasize the exquisite ability of excitable membranes to behave as band-limited filters and allow for maximal transfer of energy from an external stimulus over well-defined frequency ranges.     

Intermolecular communication on a liposomal membrane: enzymatic amplification of a photonic signal with a gemini peptide lipid as a membrane-bound artificial receptor

A supramolecular system that can activate an enzyme through photo-isomerization was constructed by using a liposomal membrane scaffold. The design of the system was inspired by natural signal transduction systems, in which enzymes amplify external signals to control signal transduction pathways. The liposomal membrane, which provided a scaffold for the system, was prepared by self-assembly of a photoresponsive receptor and a cationic synthetic lipid. NADH-dependent L-lactate dehydrogenase, the signal amplifier, was immobilized on the liposomal surface by electrostatic interactions. Recognition of photonic signals by the membrane-bound receptor induced photo-isomerization, which significantly altered the receptor's metal-binding affinity. The response to the photonic signal was transmitted to the enzyme by Cu(2+) ions. The enzyme amplified the chemical information through a catalytic reaction to generate the intended output signal.     

Bilayer lipid membrane electrochemistry in a flow injection system

The design and operation of a cell used to support bilayer lipid membranes in an electrolyte Stream of flow rate up to 1.0 ml min^-1 are described. Concentration—flow profiles and current—time response correlations are given for membrane interaction with dispersions of valinomycin. The results show that membranes provide reproducible responses and can be refreshed by on-line rinsing techniques. Further supporting evidence for the existence of a membrane surface perturbation effect has been obtained.     

Immobilised artificial membrane chromatography coupled with molecular probing. Mimetic system for studying lipid-calcium interactions in nutritional mixtures

Immobilised artificial membrane (IAM) chromatography was utilised to study the interactions of usual membrane probes with grafted phosphatidylcholine silica support, in relation to the presence of calcium ions introduced in the mobile phase as they are present in nutritional mixtures. IAM acts as a mimetic membrane of lipid emulsion globules, a major component of nutritional mixtures. The tested probes were 1,6-diphenyl-1,3,5-hexatriene (DPH), 9-diethylamino-5H-benzo[alpha]phenoxazine-5-one or nile red (NR) and 2-(p-toluidinyl)naphtalene-6-sulfonate (TNS). For each probe, partition coefficients and thermodynamic parameters of transfer from the mobile phase to the IAM stationary phase have been measured. Our results suggested that the interactions of neutral probes (i.e. DPH and NR) with phosphatidylcholine are driven by hydrophobic forces. Addition of calcium chloride to the mobile phase slightly decreased the retention of these neutral probes and dramatically increased that of anionic TNS. Moreover, an enthalpy-entropy compensation study revealed that the mechanism of interaction between TNS and IAM is independent of the calcium concentration. Results argued for the existence of electrostatic repulsion forces exerted by IAM phase towards anionic TNS. Addition of calcium ions into the mobile phase led to the establishment of an ionic double layer at the zwitterionic stationary phase surface weakening the electrostatic barrier and increasing TNS retention. Consequently, it was demonstrated that IAM appears as a suitable model to get a better insight on the lipid-calcium interactions taking place in nutritional mixtures.     

Interaction of cholesterol with artificial bilayer lipid membrane system and development of an electrochemical sensor

Interaction of Cholesterol with the bilayer arrangement of phospholipid molecules was studied using electrochemical impedance spectroscopy in Sodium Chloride (NaCl) bath solutions. The membrane resistance (R_m) was decreased from 3.35 GΩ in 1.0 M NaCl bath to 0.756 GΩ in 0.01 M NaCl bath. The cholesterol molecules were found to penetrate into Bilayer Lipid Membrane (BLM) and fluidized the BLM phase. Due to fluidization, the membrane resistance was decreased. The fluidization effect of cholesterol was dependent on the concentration of bath solutions. In 1.0 M NaCl bath solution, the membrane was stable up to 200 µM concentration of cholesterol. With the addition of cholesterol in NaCl bath solutions, the membrane capacitance was increased. An impedimetric sensor was developed based on the membrane resistance in the presence of cholesterol at various concentrations. The detection limit of cholesterol by impedimetric sensor was dependent on the concentration of NaCl in the bath.     

Reversible hybridization of DNA anchored to a lipid membrane via porphyrin

The binding of zinc-porphyrin-anchored linear DNA to supported lipid membranes was studied using quartz crystal microbalance with dissipation monitoring (QCM-D). The hydrophobic anchor is positioned at the ninth base of 39-base-pair-long DNA sequences, ensuring that the DNA is positioned parallel to the membrane surface when bound, an important prerequisite for using this type of construct for the creation of two-dimensional (2D) DNA patterns on the surface. The anchor consists of a porphyrin group linked to the DNA via two or three phenylethynylene moieties. Double-stranded DNA where one of the strands was modified with either of these anchors displayed irreversible binding, although binding to the membrane was faster for the derivatives with the short anchor. The binding and subsequent hybridization of single-stranded constructs on the surface was demonstrated at 60 °C, for both anchors, revealing a coverage-dependent behavior. At low coverage, hybridization results in an increase in mass (as measured by QCM-D) by a factor of ~1.5, accompanied by a slight increase in the rigidity of the DNA layer. At high coverage, hybridization expels molecules from the membrane, associated with an initial increase, followed by a decrease in DNA mass (as detected both by QCM-D and by an optical technique). Melting of the DNA on the surface was performed, followed by rehybridization of the single-stranded species left on the surface with their complementary strand, demonstrating the reversibility inherent in using DNA for the formation of membrane-confined nanopatterns.     

Critical threshold of noise-induced energy transduction in molecular machinery system

Responses of energy transduction of molecular machinery to random perturbation were investigated at the conditions where the system stayed near the bifurcation point. It was found that noise-induced oscillation (NIO) could occur. But how far from bifurcation point could one get the admissible region of NIO? We proposed and demonstrated numerically that there existed a critical threshold of NIO for each fixed noise intensity. Furthermore, it was found that noise intensity was a key factor for the determination of critical threshold. Finally, the detailed bifurcation diagram depending on noise intensity was replotted.     

Imitation of artificial membrane system via mobile phases with Tween-80 and cholic acid in biopartitioning micellar chromatography

The chromatographic behaviour of compounds of biomedical significance was studied using micellar mobile phases modified with polyoxyethylene (20) sorbitan monooleate (Tween-80). The influence of the surfactant within the 0.75-4% concentration range on the retention factor of model compounds was investigated. The biological surfactant cholic acid was introduced into the mobile phases in order to approach to the structure of natural membranes, viz. erythrocyte and cytoplasmatic membranes. It was found that curves of dependence of retention factor vs concentration of Tween-80 in the absence and presence of cholic acid in the mobile phase considerably diverge with one another, especially in the 2-3% concentration range of Tween-80 using C18-type support. Increasing the concentration of Tween-80 resulted in the increase of retention factors using phenyl-coated stationary phase.     

Imaging of voltage-gated alamethicin pores in a reconstituted bilayer lipid membrane via scanning electrochemical microscopy

Voltage-gated biological ion channels were simulated by insertion of the peptaibol antibiotic alamethicin into reconstituted phosphatidylcholine bilayer lipid membranes (BLMs). Scanning electrochemical microscopy (SECM) was utilized to probe initial BLM resistivity, the insertion of alamethicin pores, and mass transport across the membrane. Acquired SECM images show the spatial location of inserted pore bundles, the verification of voltage control over the pore conformational state (open/closed), and variations in passive mass transport corresponding to different topographical areas of the BLM. SECM images were also used to evaluate overall BLM integrity prior to insertion as well as transport (flux in open state) and leakage (flux in closed state) currents following insertion.     

Pore-spanning lipid membrane under indentation by a probe tip: a molecular dynamics simulation study

We study the indentation of a free-standing lipid membrane suspended over a nanopore on a hydrophobic substrate by means of molecular dynamics simulations. We find that in the course of indentation the membrane bends at the point of contact and the fringes of the membrane glide downward intermittently along the pore edges and stop gliding when the fringes reach the edge bottoms. The bending continues afterward, and the large strain eventually induces a phase transition in the membrane, transformed from a bilayered structure to an interdigitated structure. The membrane is finally ruptured when the indentation goes deep enough. Several local physical quantities in the pore regions are calculated, which include the tilt angle of lipid molecules, the nematic order, the included angle, and the distance between neighboring lipids. The variations of these quantities reveal many detailed, not-yet-specified local structural transitions of lipid molecules under indentation. The force-indentation curve is also studied and discussed. The results make a connection between the microscopic structure and the macroscopic properties and provide deep insight into the understanding of the stability of a lipid membrane spanning over nanopore.     

Voltammetric study of levomepromazine induced ionic permeability in a model lipid membrane system

The interaction of solid supported liquid films of lipids with levomepromazine is investigated in the present work by voltammetry. It is shown that the levomepromazine penetrates into the films, which results in a readily detectable change of the film permeability to electroactive species. In this respect, possibilities for the employment of supported lipid films as model systems in the research of biomembrane active compounds are briefly discussed.     

Tuning the light absorption of a molecular vanadium oxide system for enhanced photooxidation performance

A new mechanism for enhancing the visible light absorption of a homogeneous polyoxovanadate system is described. The photoactive pentanuclear {V(5)} isopolyoxovanadate cluster is formed in situ by a thermally-induced condensation reaction starting from a tetranuclear {V(4)} precursor. Upon irradiation with visible light, {V(5)} undergoes a light induced reduction reaction resulting in the formation of a 2-electron reduced {V(10)} cluster. Simultaneously, the oxidant methanol is selectively oxidized to formaldehyde. The {V(10)} cluster can subsequently be re-oxidized using H(2)O(2) or O(2).     

High-temperature micro liquid chromatography for lipid molecular species analysis with evaporative light scattering detection

The need for a rapid and sensitive chromatographic technique for analyzing lipid molecular species, has led to the development of an high-temperature micro liquid chromatographic system (HTLC) coupled to an evaporative light scattering detector. The increased diffusion coefficients and reduced viscosity at higher temperatures allowed lipids to be analyzed rapidly with solvents differing from those classically used in lipids chemistry. Hypercarb, a reverse phase material, was used for its different properties including heat resistance in high temperature micro HPLC. We have investigated the temperature effect on kinetic performances in HTLC, established pure solvents eluent strength at high temperature and studied different classes of lipids with seven pure solvents. We found that it was possible to use alcohols solvents in the mobile phase to elute lipids without the use of chlorinated solvents. A quick and simple method was developed to analyze a complex lipid simple, ceramide type III and type IV.     

Ferrocene embedded in an electrode-supported hybrid lipid bilayer membrane: a model system for electrocatalysis in a biomimetic environment

An electrode-supported system in which ferrocene molecules are embedded in a hybrid bilayer membrane (HBM) has been prepared and characterized. The redox properties of the ferrocene molecules were studied by varying the lipid and alkanethiol building blocks of the HBM. The midpoint potential and electron transfer rate of the embedded ferrocene were found to be dependent on the hydrophobic nature of the electrolyte and the distance at which the ferrocene was positioned in the HBM relative to the electrode and the solution. Additionally, the ability of the lipid-embedded ferrocenium ions to oxidize solution phase ascorbic acid was evaluated and found to be dependent on the nature of the counterion.     

Passive transport of C60 fullerenes through a lipid membrane: a molecular dynamics simulation study

To investigate the implications of the unique properties of fullerenes on their interaction with and passive transport into lipid membranes, atomistic molecular dynamics simulations of a C60 fullerene in a fully hydrated di-myristoyl-phoshatidylcholine lipid membrane have been carried out. In these simulations the free energy and the diffusivity of the fullerene were obtained as a function of its position within the membrane. These properties were utilized to calculate the permeability of fullerenes through the lipid membrane. Simulations reveal that the free energy decreases as the fullerene passes from the aqueous phase, through the head group layer and into the hydrophobic core of the membrane. This decrease in free energy is not due to hydrophobic interactions but rather to stronger van der Waals (dispersion) interactions between the fullerene and the membrane compared to those between the fullerene and (bulk) water. It was found that there is no free energy barrier for transport of a fullerene from the aqueous phase into the lipid core of the membrane. In combination with strong partitioning of the fullerenes into the lipidic core of the membrane, this "barrierless" penetration results in an astonishingly large permeability of fullerenes through the lipid membrane, greater than observed for any other known penetrant. When the strength of the dispersion interactions between the fullerene and its surroundings is reduced in the simulations, thereby emulating a nanometer sized hydrophobic particle, a large free energy barrier for penetration of the head group layer emerges, indicating that the large permeability of fullerenes through lipid membranes is a result of their unique interaction with their surrounding medium.