Ionic effects on overstretching transition of B-DNA

A three-dimensional model is proposed herein to study the ionic effects of a NaCl solution on the overstretching transition of long B-DNA molecules. In this model, the bending deformations of DNA backbones, cooperativity of base-stacking interactions, electrostatic interactions, and spatial effects of the DNA double-helix structure are taken into account. The energy of electrostatic interactions is given as a function of the ionic strength and of the folding angle based on the Poisson-Boltzmann equation. An expression is derived, which shows that the overstretching force is linear with the natural logarithm of the ionic strength. The analytical results of this model are in good agreement with recently reported experimental results.     

Nanoparticle transport in water-unsaturated porous media: effects of solution ionic strength and flow rate

This paper presents the influence of ionic strength and flow on nanoparticle (NP) retention rate in an unsaturated calcareous medium, originating from a heterogeneous glaciofluvial deposit of the region of Lyon (France). Laboratory columns 10 cm in diameter and 30 cm in length were used. Silica nanoparticles (Au-SiO₂-FluoNPs), with hydrodynamic diameter ranging from 50 to 60 nm and labeled with fluorescein derivatives, were used to simulate particle transport, and bromide was used to characterize flow. Three flow rates and five different ionic strengths were tested. The transfer model based on fractionation of water into mobile and immobile fractions was coupled with the attachment/detachment model to fit NPs breakthrough curves. The results show that increasing flow velocity induces a decrease in nanoparticle retention, probably as the result of several physical but also geochemical factors. The results show that NPs retention increases with ionic strength. However, an inversion of retention occurs for ionic strength >5.10^?2 M, which has been scarcely observed in previous studies. The measure of zeta potential and DLVO calculations show that NPs may sorb on both solid-water and air-water interfaces. NPs size distribution shows the potential for nanoparticle agglomeration mostly at low pH, leading to entrapment in the soil pores. These mechanisms are highly sensitive to both hydrodynamic and geochemical conditions, which explains their high sensitivity to flow rates and ionic strength.     

Effect of electrostatics on aggregation of prion protein Sup35 peptide

Self-assembly of misfolded proteins into ordered fibrillar structures is a fundamental property of a wide range of proteins and peptides. This property is also linked with the development of various neurodegenerative diseases such as Alzheimer's and Parkinson's. Environmental conditions modulate the misfolding and aggregation processes. We used a peptide, CGNNQQNY, from yeast prion protein Sup35, as a model system to address effects of environmental conditions on aggregate formation. The GNNQQNY peptide self-assembles in fibrils with structural features that are similar to amyloidogenic proteins. Atomic force microscopy (AFM) and thioflavin T (ThT) fluorescence assay were employed to follow the aggregation process at various pHs and ionic strengths. We also used single molecule AFM force spectroscopy to probe interactions between the peptides under various conditions. The ThT fluorescence data showed that the peptide aggregates fast at pH values approaching the peptide isoelectric point (pI = 5.3) and the kinetics is 10 times slower at acidic pH (pH 2.0), suggesting that electrostatic interactions contribute to the peptide self-assembly into aggregates. This hypothesis was tested by experiments performed at low (11 mM) and high (150 mM) ionic strengths. Indeed, the aggregation lag time measured at pH 2 at low ionic strength (11 mM) is 195 h, whereas the lag time decreases ~5 times when the ionic strength is increased to 150 mM. At conditions close to the pI value, pH 5.6, the aggregation lag time is 12 ± 6 h under low ionic strength, and there is minimal change to the lag time at 150 mM NaCl. The ionic strength also influences the morphology of aggregates visualized with AFM. In pH 2.0 and at high ionic strength, the aggregates are twofold taller than those formed at low ionic strength. In parallel, AFM force spectroscopy studies revealed minimal contribution of electrostatics to dissociation of transient peptide dimers.     

Fast ion transport in solids induced by an electric field

A theoretical model is suggested to describe the abrupt transition, induced by an electric field, of a cation sublattice in the ionic crystal bulk, as a result of which the crystal passes into the superionic conductivity state. The concepts which underlie the model are that the Frenkel defect interactions play an essential part in crystal, and the electric field greatly influences the defect formation energy. Expressions for the free energy of disordering, for the interstitial population in the crystal as a function of the strength of the electric field applied and for the critical value of the electric field which induces phase transitions have been obtained in terms of the mean field approximation. The first experimental data on the discovery and analysis of the jump in the ionic conductivity induced by an electric field, described previously, are discussed.     

Scaling in the aggregation behaviour of zinc-free insulin studied by small-angle neutron scattering

Summary The aggregation behaviour of zinc-free insulin has been studied by small-angle neutron scattering as a function of protein concentration,pH, and ionic strength of the solution. The distance distribution functions for the 12 samples have been obtained by indirect Fourier transformation. The weight-averaged molecular mass and thez-averaged radius of gyration were determined. Both quantities vary systematically with the experimental conditions. They increase with decreasingpH and with increasing ionic strength. The radius of gyration scales as a power law of the weight-average mass with the exponent 0.44. A similar scaling is found for a set of oligomers structures based on the crystal structure of zinc-free insulin. The mass distribution between the oligomers was determined by a model based on these oligomers. The results from this model and the Fourier transformations have been compared to an equilibrium model recently introduced by Kadimaet al. The model takes into account the variation of the effective charge of the monomer withpH and ionic strength. The neutron scattering results agree well with the predictions of the model. Paper presented at the I International Conference on Scaling Concepts and Complex Fluids, Copanello, Italy, July 4–8, 1994.     

Collective excitations in fast ion conductor superlattices

Within the framework of the electromagnetic theory, the collective modes in the superlattice system composed of superionic conductors and ionic crystals are studied. The superionic conductor is described by the hydrodynamical model in which the anion cage is immersed in the cation liquid. The behavior of the modes are analysed in terms of the coupling strength between excitations pertaining to different layers. The coupling strength is controlled by varying the slab thicknesses. An interesting behavior in which the diffusion mode transforms to the relaxation mode when the coupling strength is varied from strong to weak is obtained. Also, the effect of the coupling strength on the acoustical and optical modes are shown.     

Structure of gels and aggregates of disk-like colloids

The static structure factor (S(q)) of dispersions and gels of disk-like mineral colloids (Laponite) was investigated using time- and ensemble-averaged light scattering. The evolution of S(q) in time after increasing the ionic strength of well-dispersed Laponite suspensions shows that Laponite aggregates and forms fractal clusters. The structure of the aggregates does not depend on the ionic strength, but the rate of growth increases very strongly with the ionic strength. At concentrations below about 3 g/l (0.12% v/v) the aggregates sediment while at higher concentrations space-filling gels are formed. The gels are homogeneous on length scales larger than the correlation length which decreases strongly with decreasing ionic strength and increasing concentration. However, the local structure is the same, independent of the concentration and the ionic strength. Received 6 August 2000 and Received in final form 16 March 2001     

Nanoconfinement-enhanced conformational response of single DNA molecules to changes in ionic environment

We show that the ionic environment plays a critical role in determining the configurational properties of DNA confined in silica nanochannels. The extension of DNA in the nanochannels increases as the ionic strength is reduced, almost tripling over two decades in ionic strength for channels around 100 x 100 nm in dimension. Surprisingly, we find that the variation of the persistence length alone with ionic strength is not enough to explain our results. The effect is due mainly to increasing self-avoidance created by the reduced screening of electrostatic interactions at low ionic strength. To quantify the increase in self-avoidance, we introduce a new parameter into the de Gennes theory: an effective DNA width that gives the increase in the excluded volume due to electrostatic repulsion.     

Chemometric Analysis of Excitation Emission Matrices of Fluorescent Nanocomposites

The performance of multivariate curve resolution (MCR-ALS) to decompose sets of excitation emission matrices of fluorescence (EEM) of nanocomposite materials used as analytical sensors was assessed. The two fluorescent nanocomposite materials were: NH₂-polyethylene glycol (PEG200) functionalized carbon dots, sensible to aqueous Hg(II) (CD); and, CdS quantum dots attached to the dendrimer DAB, sensible to the ionic strength of the aqueous medium (CdS-DAB). The structures of these sets of EEM, obtained as function of the Hg(II) concentration and ionic strength, are characterized by collinear properties (CD) and non-linear spectral variations (CdS-DAB). MCR-ALS was able to detect that the source of the collinearities is the presence of different size CD that show similar affinity towards Hg(II). Moreover, MCR-ALS was able to model the non-linear spectral variations of the CdS-DAB that are induced by varying ionic strength. The chemometric pre-processing of the fluorescent data sets using soft-modelling multivariate curve resolution like MCR-ALS is a critical step to transform these nanocomposites with interesting fluorescent proprieties into analytical useful nanosensors.     

Multicore Capsules: Thermo‐Stimulable Wax@Water@SiO2 Multicore‐Shell Capsules (Part. Part. Syst. Charact. 2/2013)

Complex wax@water@SiO₂ multicore capsules are synthesized by combining sol‐gel process and formulation of wax‐in‐water‐in‐oil double emulsions. The inner direct wax‐in‐water emulsion is stabilized with modified silica nanoparticles using limited coalescence occurring in Pickering emulsions. In a second step, this obtained liquid dispersion is emulsified in poly‐dimethylsiloxane (PDMS) using a non ionic surfactant to stabilize the second water/oil interface. Finally, a sol‐gel process is employed to mineralize the as‐generated double emulsions giving rise to wax@water@SiO₂ multicore capsules. Due to the wax volume expansion through melting, the as‐synthesized multicore capsules offer thermally stimulated release that is enhanced when surfactant is added in the surrounding continuous oil phase. In addition, the melted wax release can be tuned from a one‐step process to a more sequential dropping mode by varying the mineral precursor tetraethoxy‐orthosilane (TEOS) concentration in the oily phase during mineralization.     

Chiral electrostatics breaks the mirror symmetry of DNA supercoiling

DNA supercoiling plays a fundamental role in regulating cellular activity and in the packaging of genetic material. In this communication, we analyse the effect of attractive chiral forces on the conformation of a closed circular DNA molecule, arising due to the helical patterns of charges on the DNA. We propose a model for closed loop DNA which uses the results of the recent theory of electrostatic interactions of a braid of two free-ended DNA molecules. Our model reproduces the known features of DNA supercoiling in an environment of low ionic strength. In high salt conditions, and in the presence of counterions that have high affinity to the DNA grooves, helix-specific forces significantly affect the conformation of the molecule by favouring a state characterized by a central left-handed braided section where there is close contact between distant portions of the loop. In such an environment we predict a previously unexplored possibility that nicked or topologically relaxed DNA molecules adopt a writhed state. This prediction suggests an alternative explanation for experiments in which it was assumed that the most stable topoisomer is always an open circle. Our results also give the first plausible explanation for the occurrence of tightly interwound molecules observed in cryo-electron microscopy and atomic force microscopy in a high ionic strength environment. We suggest several new experiments to test the predictions of this theory.     

Liquid-liquid interfacial tension of electrolyte solutions

It is theoretically shown that the excess liquid-liquid interfacial tension between two electrolyte solutions as a function of the ionic strength I behaves asymptotically as O(-sqrt[I]) for small I and as O(+/-I) for large I. The former regime is dominated by the electrostatic potential due to an unequal partitioning of ions between the two liquids whereas the latter regime is related to a finite interfacial thickness. The crossover between the two asymptotic regimes depends sensitively on material parameters suggesting that the experimentally accessible range of ionic strengths can correspond to either the small or the large ionic strength regime. In the limiting case of a liquid-gas surface where ion partitioning is absent, the image charge interaction can dominate the surface tension for small ionic strength I such that an Onsager-Samaras limiting law O(-Iln(I)) is expected.     

Prediction of cell variations with pressure of ionic layered crystal Application to the matlockite family

Compounds belonging to the matlockite family are ionic layered crystals. Some previous experimental studies on these compounds demonstrated the correlation between the difference in bond strength translating the layered properties and the anisotropic coordination of the highly polarizable halogen anion. In the present paper, we present a model to estimate the anisotropic compressibilities of matlockites which could be generalized to other ionic layered compounds. The compressibilities of each individual polyhedron which built the sheet of an ionic layered crystal are determined from a simple relation based on a semi-empirical relation obtained by Hazen et al., involving the electrical charge of the ions and the interatomic distances. The electrical charge of the anions are taken to be direction-dependent and are modulated by the anion polarizability value. Finally, to validate the model, the calculated compressibilities are compared with previously published data, but also with new high pressure experimental data obtained by X-ray absorption spectroscopy up to 20 GPa on SrFCl and SrFBr at the K edge of the strontium and by X-ray diffraction up to 30 GPa on SrFBr and PbFBr. Present estimations give results which differ from the experimental values by less than 15%. Received 26 October 1998     

Persistence length for a model semirigid polyelectrolyte as seen by small angle neutron scattering: a relevant variation of the lower bound with ionic strength

In a SANS experiment, we have directly determined for the first time the conformation of hyaluronan, a model semirigid polyelectrolyte. At high ionic strength, this is completely possible, where the scattered intensity crosses over (when decreasing q) from a q(-1) rod variation to a q(-2) and, where fitting to the "wormlike" chain model gives the backbone, intrinsic, persistence length: L0 = 86.5 A. At low ionic strength, we can safely check that the measured persistence length appears increased by at least the amount predicted by Odijk for the electrostatic contribution, L(e) (approximately kappa(-2), square of the Debye screening length). However, the intensity at the lowest q is not only due to the single chain, since it crosses over from a q(-1) to a q(-4) variation, characteristic of polymer associations.     

On the negative corona and ionic wind over water electrode surface

The DC corona discharge in air and the induced ionic wind were investigated in the needle-to-water system at atmospheric pressure. The water deformation was measured under various conditions, and wind pressure and active areas were estimated accordingly. The effects of applied voltage, gap spacing and tip radius on the corona ionic wind were studied and the qualitative analysis was provided. Self-rotation of corona discharge was observed in experiments. The results show that higher voltage or electric field strength results in a stronger ionic wind. The active area increases with applied voltage below a voltage threshold. There is an optimal gap distance for a wider as well as stronger ionic wind and blunter needle we used leads to an enhancement on both the active area and the wind strength. The wind velocity reaches 7 m/s at optimized condition in the present system. The rotation of corona discharge helps to improve the active area and uniformity of the treating area which may be associated with the chemical reaction of the water surface.     

Effects of ionic strength and charge annealing in star-branched polyelectrolytes

We have developed a scaling theory that describes the conformations of weak star-branched polyelectrolytes in dilute solutions. The dependences of the overall star size on the number of branches and on the ionic strength of the solution (tuned by the addition of low molecular weight salt) are analyzed. The intrinsic structure of the polyelectrolyte stars in salt-free and salt-added solutions is discussed in terms of concentration and elastic blobs. In contrast to neutral stars, the swollen corona of the polyelectrolyte star consists of blobs which are not closely packed. We have shown that the size of star polyelectrolytes is less sensitive to the variation in the ionic strength than the size of linear polyelectrolytes. The effects of the ionization-recombination balance in the star polyelectrolyte were taken into account. For polyelectrolytes with small ionization constant, the size of the star depends nonmonotonically on the number of branches and on the ionic strength of the solution due to recombination of counterions with charged monomers. Received: 10 November 1997 / Revised: 16 February 1998 / Accepted: 1st April 1998     

荧光探针技术研究阿特拉津与ct-DNA的相互作用

利用分子荧光探针和紫外吸收光谱技术研究了阿特拉津（Atrazine）与小牛胸腺DNA（ct-DNA）之间的相互作用。实验中选用溴化乙锭（EB）为荧光探针,考察了阿特拉津浓度、磷酸盐、离子强度以及碘化钾对系统荧光的影响。结果表明,阿特拉津对ct-DNA-EB体系的荧光存在猝灭现象,并同时存在静态和动态两种猝灭方式。KI对ct-DNA-Atrazine体系的荧光猝灭及阿特拉津使ct-DNA紫外吸收的增色和红移现象表明阿特拉津与ct-DNA之间存在嵌插作用。磷酸盐、离子强度对ct-DNA-EB-Atrazine体系的荧光强度影响表明,阿特拉津与ct-DNA的磷酸基之间存在非特征性的静电作用,并且高离子强度不利于这种作用。     

磷脂在膜结构间的交换:温度和离子强度的影响

磷脂跨膜交换对生物膜功能与药学研究有重要意义.石英电子微天平及耗散系数测量仪被用于研究囊泡与支撑膜间磷脂的交换行为.研究表明:首先,在磷脂跨膜输运过程中,热力学环境和离子强度对支撑膜表面吸附囊泡的形变程度影响较小,囊泡与支撑膜的总接触面积直接取决于囊泡的吸附数量;其次,交换过程中膜结构间最大总接触面积随着温度的升高和离子强度的降低而增大,温度和离子引起的囊泡吸附速率和跨膜交换速率的变化在其中发挥着关键调节作用.本研究有助于加深对磷脂在生理条件下跨膜输运过程的理解,并为基于脂质体的药物载运体系研究提供参考.     

Fluorescence Spectral Properties of Rhodamine 6G at the Silica/Water Interface

In this work, total internal reflection synchronous fluorescence spectroscopy (TIRSF) is applied successfully to investigate rhodamine 6G (R6G) at the silica/water interface. In comparison with the bulk spectra, 5 nm red shift is observed in the interface spectra, which is mainly due to the limitation of freedom of rotational movement of R6G molecules at the interface. The increase of R6G concentration induces the self-quenching of adsorbate at the interface. The dependence of interfacial fluorescence on the acidity and ionic strength was studied. Both the acidity and ionic strength affect the adsorptive behaviors of R6G at the silica/water interface.     

A Zinc-dipicolylethylenediamine Modified Near Infrared Fluorophore for Sensing of ATP

The development of fluorescent probes for sensing of anions in biological environments is still a demanding task. Due to the structural versatility of biological active anions there are many challenges to cope with compared to fluoroionophores for the determination of metal cations. This concerns particularly the design of the recognition element, which has to provide a selective response, preferably unaffected by alterations of pH and ionic strength. Polyphosphate anions such as ATP are interesting targets in bioanalysis because they are involved in many enzymatic reactions and bear versatile biological functions. Zinc dipicolylamine complexes attached to fluorophores have been turned out to be promising candidates for ATP sensing with sufficient sensitivity and selectivity. We now report the first NIR probe that responds to ATP based on a zinc dipicolylethylenediamine receptor. It shows a “turn-on” fluorescence behavior which is selective to other polyphosphate species even at high ionic strength of the sample solution.