Crystal and molecular structure of 1-(2-isopropylcarbamoylpropan-2-ylamino) 3-(1-naphthyloxy)propan-2-ol (C20H28N2O3)

The crystal structure of the title compound has been determined with three-dimensional MoK X-ray diffraction data. The space group and unit-cell parameters are:P2₁/c,a=8.610(3) Å,b=13.516(5) Å,c=16.818(5) Å,=94.95(3)° andV=1950.0(7) ų. The structure was solved by direct methods, and refined by full-matrix least-squares techniques toR=0.0608 andR _w=0.0648. The compound is a derivative of the popular-adrenolytic propranolol, and in the propanol part of the side chain shows the typicalgauche conformation.     

Crystal and molecular structures of 1-(2-iso butylylcarbamoyl propan-2-ylamino) 3-(1-naphthyloxy)propan-2-ol hydrochloride (1) (C21H31N2O3Cl) and 1-(2-isobutyloxycarbonylo propan-2-ylamino) 3-(1-naphthyloxy)propan-2-ol hydrochloride (2) (C21H30NO4Cl)

This paper shows the crystal structures of two new-adrenergic antagonists, derivatives of propranolol, which were determined with three-dimensional x-ray diffraction data. The space groups and unit-cell parameters are: compound1 (C₂₁H₃₁N₂O₃Cl) monoclinic space groupP2₁/c,a=20.523(4),b=6.909(2),c=15.950(2) Å,=105.03(1)°; compound2 (C₂₁H₃₁NO₄Cl) monoclinic space groupP2₁/c,a=6.364(2),b=36.043(8),c=10.149(1) Å,=104.48(2)°. The structures were solved with direct methods, and refined with full-matrix least-squares techniques toR indices of 0.059 and 0.067, respectively. The-CH(OH)-CH₂-NH-sections of the side chains show the conformation approximate togauche.     

Crystal and molecular structures of 1-(2-carboxypropan-2-ylamino)-3-(1-naphthyloxy) propan-2-ol (1) (C17H21NO4) and 1-(2-carbamoyl propan-2-ylamino)-3-(1-naphthyloxy) propan-2-ol (2) (C17H22N2O3)

The crystal structures of two new-adrenergic antagonists, derivatives of propranolol containing 2-methylalanine fragment are described in this paper. The space groups and unit-cell parameters are: compound1 (C₁₇H₂₁NO₄): monoclinic, space groupP2₁/n,a=5.787(1),b=18.703(4),c=23.526(5)Å,=96.49(2)°; compound2 (C₁₇H₂₂N₂O₃): triclinic, space groupP¯1,a=8.321(1),b=10.121(1),c=10.368(1)Å,=109.49(1)°,=90.49(1)°, =103.48(1)°. The structures were solved by direct methods and refined with full matrix least-squares techniques toR indices of 0.055 and 0.049, respectively. The molecules of compound1 exist in the crystal as dual ions. The molecules of compound2 are compact and their external chain is twisted in a characteristic way (similar to that found in peptides).     

Crystal and molecular structures of 1-(2-methyloxycarbonylo-propan-2-ylamino)-3-(1-naphthyloxy) propan-2-ol hydrochloride (1) (C18H24NO4Cl) and 1-(2-methylcarbamoylpropan-2-ylamino)-3-(1-naphthyloxy) propan-2-ol (2) (C18H24N2O3)

The crystal structures of two new-adrenergic antagonists, derivatives of propranolol, are reported in this paper. The space groups and unit-cell parameters are: compound1 (C₁₈H₂₄NO₄Cl), monoclinic,P2₁,a=7.215(1),b=8.591(1),c=15.017(1)Å,=95.64(1)°; compound2 (C₁₈H₂₄N₂O₃), monoclinic,P2₁/c,a=10.218(3),b=21.616(5),c=8.124(2)Å,=101.28(2)°. The structures were solved with direct methods and refined by full-matrix least-squares techniques toR indices of 0.036 and 0.066, respectively. The molecule of compound1 has an extended external chain, and thus its structure is linear, whereas the molecule of compound2 is compact, and its external chain is twisted in a characteristic way, as is the case of peptides.     

Crystal structures of 1-(2-hydroxyphenyl)-3-phenyl-1,3-propanedione and 1-(1,3-benzodioxol-5-yl)-3-(2,4-dimethoxyphenyl)-1,3-propanedione

1-(2-Hydroxyphenyl)-3-phenyl-1,3-propanedione crystallizes in the triclinic space group (a=5.4233(5),b=13.910(1),c=17.036(1) Å, =68.311(6), =80.854(7), =78.760(8)°) as two independent enolic tautomers in which the hydroxyl and phenolic protons are hydrogen bonded to the ketonic oxygen atom. The structure was refined toR=0.039 for 2085I3(I) reflections. 1-(1,3-Benzodioxol-5-yl)-3-(2,4-dimethoxyphenyl)-1,3-propanedione, which belongs to the triclinic space group (a=7.3990(7),b=8.1239(5),c=14.004(1) Å, =86.673(6). =88.574(7), =64.885(7)°) also exists in the enolic form. The structure was refined toR=0.040 for 1564I3(I) reflections.     

Crystal and molecular structure of 2,2′-bipyridyl-(μ3-1-keto-2,3,4-triphenylcyclobutenyl) dicarbonylbromomolybdenum(1)benzene [(C6H5)3C3CO](C10H8N2)(CO)2MoBr·C6H6

The crystal structure of [(C₆H₅)₃C₃CO](C₁₀H₈N₂)(CO)₂MoBr·C₆H₆ has been determined. The complex crystallizes in the triclinic space groupP ¯1 witha=8.52(1),b=19.42(3),c=10.54(1) Å, =97.4(1), =74.6(1), and =87.5(1)°. There are two formula units per cell. A total of 2924 unique observed reflections was collected photographically using CuK radiation. The structure was refined toR=0.072. The molybdenum atom in this compound can be considered as situated at the center of a very distorted octahedron. The six coordination sites about the metal atom are occupied by two carbonyl groups which share with the bipyridyl the four equatorial positions. The bromine and a -bonded keto-triphenylcyclobutenyl ring take up the two axial positions. There is an ³ interaction between the cyclobutenyl ring and the molybdenum atom. The detailed geometry of the 1-keto-2,3,4-triphenylcyclobutenyl ligand is similar to that found by Coffey (1962) in a cobalt complex. In the present compound the cyclobutenyl ring is slightly puckered with a dihedral angle of 11.05° between the plane which contains the allylic carbon atoms and that containing the ketonic group. Two solvating benzene molecules are centered at the inversion sites in the unit cell.     

Crystal and molecular structure of (exo)-1-carboxymethyl-5-ethoxycarbonyl-4,5,6,11b-tetrahydroisoxazolidmo-[2,3-a]-β-carboline,C18H20N2O5

The structure of the title compound C₁₈H₂₀N₂O₅, was determined by X-rays atT=290 K.M _r =344.366, monoclinic, space groupP2₁/c,a=15.589(4),b=7.619(1),c=16.792(4) Å, =111.47(2)°,V=1856.1 ų,Z=4,D _x =1.23 Mg m^–3. CuK radiation (graphite crystal monochromator, =1.54178 Å),(CuK)=7.17 cm^–1,F(000)=728. Final conventionalR-factor=0.075,R _w =0.106 for 2266 observed reflections and 274 variables. The structure was solved usingMultan.     

Crystal structure of dinitratotris(pyridine)nickel(II), Ni(NC5H5)3(NO3)2

Ni(NC₅H₅)₃(NO₃)₂ crystallizes in the triclinic space group P¯1 witha=8.432(2),b=9.993(2),c=12.181(3)Å, =69.78(2),=83.16(2), =67.73(1), andD _c =1.57 g cm^–3 forZ=2. The Ni²⁺ ion is six-coordinate with one bidentate and one monodentate nitrato ligand.     

Crystal and molecular structure of OC(CoC5H5)3(CF3CCCF3)

The structure of the title compound has been confirmed by an X-ray diffraction analysis, and refined by full-matrix least squares. The crystals are mono-clinic:a=9.171(3),b=25.176(15)c=9.192(3) Å,=117.08(3)°,Z=4,D _x =1.976g cm^–3,=2.66mm^¯1, space groupP2₁/n (No. 14). The finalR value is 5.7%. Interatomic distances and bond angles are compared with those reported in related molecules.The preferred name of this compound according to the IUPAC rules is ₃-[11–2-bis(trifluoromethyl)vinylene]- ₃-carbonyl-tris (-cyclopentadienyl)-triangulo-tricobalt.     

Synthesis and structure of (η5-C5H5)2Hf(η1-NC4H4)2

The crystal structure of (⁵-C₅H₅)₂Hf(¹-NC₄H₄)₂ has been determined from X-ray data measured by counter methods. The title compound is isostructural with (⁵-C₅H₅)₂Zr(¹-NC₄H₄)₂, and crystallizes in the monoclinic space groupP2₁/c (C _2h ⁵ , No. 14) with unit cell constantsa=9.605(3),b=8.174(3),c=19.487(4) Å, =90.85(3)°, andZ=4 forD _c=1.91 gcm^–3. Full-matrix least-squares refinement gave a finalR value of 0.068 for 2154 independent observed reflections. The two cyclopentadienyl rings are ⁵-coordinated to the hafnium atom at an average Hf-C(⁵–) distance of 2.51(1) Å. The Hf-N-centroid (-pyrrolyl) angles average 166°.     

Crystal structure of 1-phenylamino-2-phenyl-4-p-chlorophenylimidazole, C21H16N3Cl

The condensation of amidrazones with -bromoketones through ring closure affords two isomeric products. The minor product was subjected to X-ray diffractometric analysis and turned-out to be a substituted imidazole. The title compound crystallizes in space group P2₁/c, with a = 11.838(2), b = 13.249(1), c = 11.226(2) Å, = 91.01(1)°. The packing of molecules is determined by a hydrogen bond N–HN (2.908(5)).     

Crystal structure oftrans-tetrachlorobis[2-(2-1H-imidazolyl)-1H-imidazolium]cadmium(II), [Cd(H3biim)2Cl4]

The reaction between cadmium(II) chloride and 2,2'-bi-1H-imidazole (H₂biim) in an acidic solution affords [Cd(H₃biim)₂Cl₄] (H₃biim=2-(2-1H-imidazolyl)-1H-imidazolium) in 63% yield. The compound crystallizes in the triclinic space groupP1, wherea=8.072(2),b=8.100(2),c=8.593(2) Å, =75.89(2), =62.94(2), =63.29(1)°,V=446.4(2) ų, andZ=1. The central Cd atom exhibits an octahedral geometry composed of a Cl₄N₂ core. The Cd-N bond distance is 2.392(2) Å. Cd–Cl distances are 2.5919(9) and 2.671(1) Å.     

Crystal and molecular structure of (exo)-2-phenyl-5-ethoxycarbonyl-4,5,6,11b-tetrahydroisoxazolidino-[2,3-a]-β-carboline,C22H22N2O3

The structure of the title compound, C₂₂H₂₂N₂O₃, was determined by X-rays atT=290 K.M _r =362.427, orthorombic, space groupPbca,a=11.666(4),b=15.691(1),c=20.931(1) Å,V=3831.4 ų,Z=8,D _x =1.257 Mgm^–3. CuK radiation (graphite crystal monochromator, =1.54178 Å),(CuK)=6.42 cm^–1. Final conventionalR-factor=0.050,R _w =0.062 for 2552 observed reflections and 301 variables. The structure was solved usingMultan.     

On the organoaluminum chemistry of multidentate phosphine ligands. Reaction of trimethylaluminum with bis(diphenylphosphino)methane: Synthesis and molecular structure of [Al(CH3)3]2[(C6H5)2PCH2P(C6H5)2]

Reaction of an excess of trimethylaluminum with bis(diphenylphosphino)-methane in heptane affords the crystalline complex [A1(CH₃)₃]₂[(C₆H₅)₂PCH₂P(C₆H₅)₂]. The title compound crystallizes in the triclinic space group P¯1 with unit cell parametersa=10.053(6),b=11.017(6),c=15.908(8) Å,=85.58(4),=71.80(4), =77.49(4)°,V=1634(1) ų, andD _c=1.07 g cm^–3 forZ=2. Least-squares refinement based on 2924 observed reflection with intensitiesI3I) in the range 2.00245.0° converged atR=0.050 (R _w=0.067). The Al-P distances are 2.585(2) and 2.521(2) Å, and the P-C-P angle is 121.4(2)°.     

The role of X-ray crystallography in drug design: Identification of the two isomers 17β-hydroxy-17α-methyl-5(β andα)-androstano-(2,3-C)-1′, 2′, 5′-oxadiazole (HS804 and HS805) (steroids and related studies,Part 62)

Crystal structure analysis has distinguished between the two epimers 17-hydroxy-17-methyl-5( and)-androstano-(2, 3-C)-1, 2, 5-oxadiazole (HS804 and HS805). HS804 is trigonal,P3₂,a=14.820(4),c=7.177(3) Å,Z=3 and HS805 is orthorhombic,P2₁2₁2₁,a=9.507(4),b=18.528,c=10.048(4) Å,Z=4. The crystal structures were solved by direct methods and refined by full-matrix least squares toR=0.0376 for 1419 reflections (HS804) andR=for 1819 reflections (HS805), using diffractometer measured data with CuK radiation. The two molecules have different ring connections,A/B cis in HS804 andA/B trans in HS805, the planar oxadiazole ring beingcis fused to ringA in both molecules. RingA is strained in both molecules.     

Steroids and related studies. Part 60. Crystal and molecular structures of 17β-(2-hydroxyethyl)-3β-and 3α-pyrrolidino-17a-aza-D-homo-5-androstenes: HS-625 form 1, (3β-pyrrolidino) and HS-625 form 2 (mixed-3α and -3β-pyrrolidino epimers)

The crystal structures of two forms of 17-(2-hydroxyethyl)-3-pyrrolidino-17a-aza-D-homo-5-androstene (HS-625) are reported. In HS-625 (aqueous solvate) form 1, moleculeA, and HS-625 (anhydride) form 2, moleculeB, the pyrrolidine group is 3- substituted, while in HS-625 (anhydride) form 2, moleculeC has its pyrrolidine ring -substituted. HS-625 form 1 is orthorhombic, space groupP2₁2₁2₁, witha=7.089(4),b=11.502(6),c=28.975(16) Å,Z=4; form 2 is triclinic, space groupP1, witha=14.013(8),b=12.572(6),c=6.688(4) Å, =95.187(20), =103.491(21); =86.210(20)°,Z=2. MoleculesA andB have similar geometry, differences in moleculeC being related to strain caused by the unusual 3- ring substituent which also produces a pronounced kink in the backbone of the molecule. An unusual feature of the analysis of form 1 is the location of the water hydrogens in the difference electron density well above background. None of the OH hydrogens was located. Both structures are hydrogen bonded, but the pyrrolidine nitrogen N(31) in moleculeC is heavily congested and is unable to act as an acceptor. The hydroxyethyl side chain, important for activity, has a different conformation in the three molecules (t,g, t,-g, andt,t respectively).     

Crystal and molecular structure of palladium(II), copper(II) and zinc(II) complexes of 1-methyl-3-(4-methyl)phenyltriazen-1-oxide

The structures of palladium(II), copper(II) and zinc(II) bis(chelates) of 1-methyl-3-(4-methyl)phenyltriazen-1-oxide have been determined by single-crystal X-ray methods. The crystals of [Pd(OMeN₃C₆H₄Me-4)₂] (I) are triclinic witha=7.410(3),b=7.806(3),c=8.371(2) Å, =65.80(2), =88.73(3), =81.04(3)°,Z=1, space group . The crystals of [Cu(OMeN₃C₆H₄Me-4)₂] (II) are monoclinic,a=14.934(5),b=10.111(4),c=11.762(3) Å, =96.00(2)°,Z=4, space group P2₁/c. The crystals of [Zn(OMeN₃C₆H₄Me-4)₂] (III) are triclinic witha=7.912(2),b=10.056(2),c=11.600(2) Å, =87.31(3), =74.96(3), =74.02(3)°,Z=2, space group . The structures of (I), (II), and (III) were solved to final values ofR=0.029, 0.043 and 0.034, respectively. A planar structure has been found for (I), (II) exhibits a tetrahedrally distorted square planar structure, whereas (III) is tetrahedral. The crystals of all three complexes are held by networks of stacking interactions.     

Hydrogen-bonded coordination network in crystal structures of [Cu(3-PM)4Cl2] and [Cu(4-PM)4Cl]Cl, (PM = pyridylmethanol)

The crystal and molecular structures of [Cu(3-PM)₄Cl₂] (1) and [Cu(4-PM)₄Cl]Cl (2) have been determinated by X-ray crystallography. Complex 1 crystallizes in the triclinic system, space group P–1, with lattice parameters a = 7.972(2) Å, b = 8.293(2) Å, c = 10.707(2) Å, = 105.73(3)°, = 90.04(3)°, = 110.38(3)°, and Z = 1 at 100 K. The coordination geometry of each Cu atom is approximately octahedral formed by four nitrogen atoms of pyridine rings of 3-pyridylmethanol molecules in the equatorial plane and two chlorine atoms occupying the axial positions. The O—HsO, C—HsCl, and O—HsCl intermolecular hydrogen bonds and s stacking link the molecules in 3-D hydrogen-bonded coordination network. Complex 2 crystallizes in the tetragonal system, space group P4/n, with lattice parameters a = 10.464(1) Å, c = 11.339(2) Å, and Z = 2 at 217 K and a = 10.352(1) Å, c = 11.201(2) Å, and Z = 2 at 293 K. The coordination geometry of Cu atom in the [Cu(4-PM)₄Cl]⁺ ion is approximately square pyramidal formed by four nitrogen atoms of pyridine rings of 4-pyridylmethanol molecules in equatorial plane and one chlorine atom in axial position. The O—HsCl and C—HsCl intermolecular hydrogen bonds link the molecules in 2-D hydrogen-bonded coordination network.     

Structure of 593-1593-1593-1hexafluorophosphate, [Co(C5H4COOMe)2](PF6)

Crystals of [Co(C₅H₄COOMe)₂](PF₆) are triclinic, spacegroup witha=6.854(3),b=7.367(4),c=9.430(4) Å, =69.12(3), =86.56(4), =67.20(4)°,Z=1. The cation and anion both lie on crystal inversion centers. The Co–C bond lengths are in the range 2.030–2.041(3) Å. The COOMe groups are twisted 5.4° from the cyclopentadienyl ring planes. Refinement with 1574 data [I>3(I)] converged atR 0.041.     

Choline sodium 4-amino-1-β-d-ribofuranosyl-2-(1H)-pyrimidionone diphosphate tetrahydrate (Sodium cytidine diphosphocholine,C14H33N4NaO15P2)

This communication presents a preliminary report on the crystal structure of this important nucleotide, involved in lecithin synthesis in animal tissues. The crystallographic data were recorded using a four-circle diffractometer with Cu-K x-radiation. Crystal data: orthorhombic, space groupP2₁2₁2₁ (No. 19),Z = 4,a = 6.98 pm,b = 123.6 pm,c = 292.3 pm,U = 2.522 nm³. The structure was solved by means of a Patterson and electron-density maps and refined by several cycles of least-squares using isotropic temperature factors toR = 0.14.The torsion angles associated with the furanosyl ring are, in general, at the very extreme of the range commonly observed for C(2) endopuckering (Altona and Sundaralingam, 1972); their values are 1 = 319 °, 2 = 47 °, 3 = 326 °, 4 = 13 °, 5 = 18 °. The phase angle of pseudorotation, calculated from these values using the formula given by Altona and Sundaralingam (1972) is 139 °. This shows the ribose ring to be slightly nearer to the C(1) exopuckering than the C(2) endopuckering conformation, but remote from being a C(3) endo-conformer. The sugar ring, in fact, is very close to being an idealized twist conformer. This is supported by a four-atom least-squares planes study, and is consistent with the high value of 237 ° (Sundaralingam, 1973).Backbone torsion angles associated with the structure are = 57 °, = 133 °, = 174 °, and = 291 °. is some 7 ° less than the preferred minimum value for C(2) endopuckering.