Determination of the heat of formation of ortho-benzyne by ion cyclotron resonance spectroscopy.

Ion Cyclotron Resonance Spectroscopy has been employed to obtain a value for the heat of formation of ortho-benzyne of 118 ± 5 kcal mol^?1.     

Optimal laser control of ultrafast photodissociation of I2- in water: mixed quantum/classical molecular dynamics simulation

A linearized optimal control method in combination with mixed quantum/classical molecular dynamics simulation is used for numerically investigating the possibility of controlling photodissociation wave packets of I(2)(-) in water. Optimal pulses are designed using an ensemble of photodissociation samples, aiming at the creation of localized dissociation wave packets. Numerical results clearly show the effectiveness of the control although the control achievement is reduced with an increase in the internuclear distance associated with a target region. We introduce effective optimal pulses that are designed using a statistically averaged effective dissociation potential, and show that they semiquantitatively reproduce the control achievements calculated by using optimal pulses. The control mechanisms are interpreted from the time- and frequency-resolved spectra of the effective optimal pulses.     

Optimization of ionization conditions for analysis of humic substances from natural waters using Electrospray Ionization Fourier Transform Ion Cyclotron Resonance mass spectrometry (ESI FTICR MS)

An approach to optimizing conditions of acquiring Electrospray Ionization Fourier Transform Ion Cyclotron Resonance mass spectra (ESI FTICR MS) was suggested. This method was employed to study the influence of cone voltage and the composition of the solution on peak intensity in ESI FTICR mass spectra of natural water humic substances. A presence of water in methanol solution was shown to reduce signal intensity significantly. The highest integral intensity of peaks selected was reached on 110 mg/l sample solution in acetonitrile and cone voltage 3.0 kV. The number of peaks to which molecular formulas were assigned, including doubly-charged peaks, was increased using these conditions.     

Terahertz-laser control of large amplitude vibrational motion in the sub-one-cycle pulse limit

We investigate the control of state-selective population transfer in the THz spectral range generated by sub-one-cycle pulse excitation. To this end we developed a zero-net-force modification of the optimal control algorithm which allows us to extend the algorithm into the ultrashort pulse domain. By combining the analysis of the control landscapes and that of optimal control theory, we were able to formulate a general mechanism suitable for laser control by ultrashort pulses. The strategy consists of a superposition of two pi-pulses with carrier envelope phases of phi = pi/2. The first pulse is effectively in resonance with the targeted transition, while the second one, fired at around the minimum of the first pulse second lobe, removes leaking to the dipole-coupled background state. To compensate for the pulses ultrashort duration, the carrier frequencies of both pulses are red-shifted from the spectroscopic resonance.     

Hydrogen/deuterium exchange in gas phase reactions of anions with some alkyl phenyl ethers

The gas phase reactions of anions with methyl and ethyl phenyl ether have been studied by Fourier Transform Ion Cyclotron Resonance Mass Spectrometry. ¹⁸O-Labelling has shown that part of the reactions of OH^- with methyl phenyl ether proceed via ipso-substitution, the main reaction channel being S_N2 substitution. Deuterium labelling has shown that extensive inter- and intramolecular hydrogen/deuterium exchange can precede the final substitution reaction. Hydrogen atoms originating from the methoxy substituent are involved in this exchange process. The reactions of anions with ethyl phenyl ether proceed mainly via an elimination mechanism. Deuterium labelling has shown that in some cases hydrogen/deuterium exchange takes place prior to elimination.     

Gated trapped ion mobility spectrometry coupled to fourier transform ion cyclotron resonance mass spectrometry

Analysis of molecules by ion mobility spectrometry coupled with mass spectrometry (IMS-MS) provides chemical information on the three dimensional structure and mass of the molecules. The coupling of ion mobility to trapping mass spectrometers has historically been challenging due to the large differences in analysis time between the two devices. In this paper we present a modification of the trapped ion mobility (TIMS) analysis scheme termed “Gated TIMS” that allows efficient coupling to a Fourier Transform Ion Cyclotron Resonance (FT-ICR) analyzer. Analyses of standard compounds and the influence of source conditions on the TIMS distributions produced by ion mobility spectra of labile ubiquitin protein ions are presented. Ion mobility resolving powers up to 100 are observed. Measured collisional cross sections of ubiquitin ions are in excellent qualitative and quantitative agreement to previous measurements. Gated TIMS FT-ICR produces results comparable to those acquired using TIMS/time-of-flight MS instrument platforms as well as numerous drift tube IMS-MS studies published in the literature.     

Laser vaporization: A versatile method for studying metal clusters

Vaporizing solid samples of metals and semiconductors with a YAG Laser is a method well suited for producing molecules and clusters of those materials. The clusters are examined by either laser-induced fluorescence (LIF) or mass spectroscopic methods. The technique is valuable for both gas phase and matrix studies. The method is described and some applications, studying either the structure of small metal molecules or their reactions, are reviewed, with emphasis on our recent results from the LIF studies of LiBe, Al₂ and the reaction of Al with oxygen, yielding A1₂O. For larger clusters, Ion Cyclotron Resonance is an extremely valuable method, as we demonstrate by its application to the reactions of small charged silicon clusters with strong oxidising agents.     

Shaping femtosecond coherent anti-Stokes Raman spectra using optimal control theory

Optimal control theory is used to tailor laser pulses which enhance a femtosecond time-resolved coherent anti-Stokes Raman scattering (fs-CARS) spectrum in a certain frequency range. For this aim the optimal control theory has to be applied to a target state distributed in time. Explicit control mechanisms are given for shaping either the Stokes or the probe pulse in the four-wave mixing process. A simple molecule for which highly accurate potential energy surfaces are available, namely molecular iodine, is used to test the procedure. This approach of controlling vibrational motion and delivering higher intensities to certain frequency ranges might also be important for the improvement of CARS microscopy.     

The gas-phase acidity of HCP,CH3CP,HCAs, and CH3CAs: an unexpected enhanced acidity of the methyl group

The gas-phase acidities of methylidynephosphine, HCtbond;P, ethylidynephosphine, CH(3)Ctbond;P, and ethylidynearsine, CH(3)Ctbond;As, have been measured by means of Fourier Transform Ion Cyclotron Resonance (FTICR) mass spectrometry and calculated at the CCSD(T)/6-311+G(3df,2p)//QCISD/ 6-311+G(df,p) level of theory. An analysis of these results shows that, in contrast to the well-known fact that HCtbond;N is a stronger acid than CH(3)Ctbond;N, CH(3)Ctbond;P and CH(3)Ctbond;As are more acidic than HCtbond;P and HCtbond;As, respectively. The most important consequence of this unexpected effect is that while HCtbond;P and HCtbond;As are found to be weaker acids than HCtbond;N, the opposite trend is found for the corresponding methyl derivatives, the acidity of which increases as CH(3)Ctbond;N相似文献   

Influence de l’énergie interne sur la réactivité de l’ion Fe(CO)2+ avec le diméthyléther, étudiée dans un spectromètre de masse FT–ICR

The influence of the internal energy on the reactivity of iron carbonyl cations with dimethylether CH₃OCH₃ (DME) has been studied using a triple cell Fourier Transform Ion Cyclotron Resonance mass spectrometer. The experimental set-up as well as the data analysis are briefly presented before being detailed on the example of the reactivity of Fe(CO)₂⁺. The strong energy dependence upon the reactivity of the ion is shown: when working with thermalised ions, the only channels observed are the two successive substitutions of a CO ligand by one DME molecule, whereas other channels are opened up for excited ions (the cleavage of the C–O bond may be homolytic or due to a rearrangement). A reaction mechanism of the C–O bond activation is then proposed.     

Sample handling and contamination encountered when coupling offline normal phase high performance liquid chromatography fraction collection of petroleum samples to Fourier transform ion cyclotron resonance mass spectrometry

Normal phase high performance liquid chromatography (HPLC) is used to separate a gas oil petroleum sample, and the fractions are collected offline and analyzed on a high resolution Fourier Transform Ion Cyclotron Resonance Mass Spectrometer (FT-ICR MS). The separation prior to MS analysis dilutes the sample significantly; therefore the fractions need to be prepared properly to achieve the best signal possible. The methods used to prepare the HPLC fractions for MS analysis are described, with emphasis placed on increasing the concentration of analyte species. The dilution effect also means that contamination in the MS spectra needs to be minimized. The contamination from molecular sieves, plastics, soap, etc. and interferences encountered during the offline fraction collection process are described and eliminated. A previously unreported MS contamination of iron formate clusters with a 0.8 mass defect in positive mode electrospray is also described. This interference resulted from the stainless steel tubing in the HPLC system. Contamination resulting from what has tentatively been assigned as palmitoylglycerol and stearoylglycerol was also observed; these compounds have not previously been reported as contaminant peaks.     

Ab initio study of optimal control of ammonia molecular vibrational wavepackets: Towards molecular quantum computing

Optimal control theory is applied to a molecular vibrational system in light of its possible application to quantum computing (QC). We present the numerical results of an ammonia molecular vibrational model system with two modes: a bending mode and an asymmetric stretching mode. We demonstrate logic gates fundamental to QC algorithms, namely Hadamard and controlled-NOT gates. Our results show that averages of population transfers at each gate are above 93% high fidelity. A mode that has a double-well structured potential is found to have many transfer pathways, which facilitates obtaining optimal laser pulses.     

Lycorine Alkaloid and Crinum americanum L. (Amaryllidaceae) Extracts Display Antifungal Activity on Clinically Relevant Candida Species

Candida species are the main fungal agents causing infectious conditions in hospital patients. The development of new drugs with antifungal potential, increased efficacy, and reduced toxicity is essential to face the challenge of fungal resistance to standard treatments. The aim of this study is to evaluate the in vitro antifungal effects of two crude extracts of Crinum americanum L., a rich alkaloid fraction and lycorine alkaloid, on the Candida species. As such, we used a disk diffusion susceptibility test, determined the minimum inhibitory concentration (MIC), and characterized the components of the extracts using Electrospray Ionization Fourier Transform Ion Cyclotron Resonance Mass Spectrometry (ESI FT-ICR MS). The extracts were found to have antifungal activity against various Candida species. The chemical characterization of the extracts indicated the presence of alkaloids such as lycorine and crinine. The Amaryllidaceae family has a promising antifungal potential. Furthermore, it was found that the alkaloid lycorine directly contributes to the effects that were observed for the extracts and fraction of C. americanum.     

Use of the Gerchberg–Saxton algorithm in optimal coherent anti-Stokes Raman spectroscopy

We are utilizing recent advances in ultrafast laser technology and recent discoveries in optimal shaping of laser pulses to significantly enhance the stand-off detection of explosives via control of molecular processes at the quantum level. Optimal dynamic detection of explosives is a method whereby the selectivity and sensitivity of any of a number of nonlinear spectroscopic methods are enhanced using optimal shaping of ultrafast laser pulses. We have recently investigated the Gerchberg–Saxton algorithm as a method to very quickly estimate the optimal spectral phase for a given analyte from its spontaneous Raman spectrum and the ultrafast laser pulse spectrum. Results for obtaining selective coherent anti-Stokes Raman spectra (CARS) for an analyte in a mixture, while suppressing the CARS signals from the other mixture components, are compared for the Gerchberg–Saxton method versus previously obtained results from closed-loop machine-learning optimization using evolutionary strategies.     

Chemical ionization using CF3+: Efficient detection of small alkanes and fluorocarbons

The trifluoromethyl ion CF₃⁺ is evaluated as a chemical ionization (CI) precursor in a compact Fourier Transform Ion Cyclotron Resonance (FTICR) mass spectrometer. It reacts with alkanes by hydride abstraction allowing characterization and quantification of alkanes up to C4 and cyclic. With larger alkanes fragmentation occurs. Fluorocarbons react by fluoride abstraction. Rate coefficients have been measured for reaction with alkanes, fluoroalkanes, chlorofluoroalkanes as well as several common VOCs. Use of CF₃⁺ for trace analysis in air has been tested on an air sample containing traces of acetone, toluene, benzene and cyclohexane. The results are consistent with those obtained with H₃O⁺ precursor and allow additional cyclohexane quantification.     

Photosynthetic models with maximum entropy production in irreversible charge transfer steps

Steady-state bacterial photosynthesis is modelled as cyclic chemical reaction and is examined with respect to overall efficiency, power transfer efficiency, and entropy production. A nonlinear flux–force relationship is assumed. The simplest two-state kinetic model bears complete analogy with the performance of an ideal (zero ohmic resistance of the P–N junction) solar cell. In both cases power transfer to external load is much higher than the 50% allowed by the impedance matching theorem for the linear flux–force relationship. When maximum entropy production is required in the transition with a load, one obtains high optimal photochemical yield of 97% and power transfer efficiency of 91%. In more complex photosynthetic models, entropy production is maximized in all irreversible electron/proton (non-slip) transitions in an iterative procedure. The resulting steady-state is stable with respect to an extremely wide range of initial values for forward rate constants. Optimal proton current increases proportionally to light intensity and decreases with an increase in the proton-motive force (the backpressure effect). Optimal affinity transfer efficiency is very high and nearly perfectly constant for different light absorption rates and for different electrochemical proton gradients. Optimal overall efficiency (of solar into proton-motive power) ranges from 10% (bacteriorhodopsin) to 19% (chlorophyll-based bacterial photosynthesis). Optimal time constants in a photocycle span a wide range from nanoseconds to milliseconds, just as corresponding experimental constants do. We conclude that photosynthetic proton pumps operate close to the maximum entropy production mode, connecting biological to thermodynamic evolution in a coupled self-amplifying process.     

Experimental and theoretical studies of the structures and interactions of vancomycin antibiotics with cell wall analogues

Surface-induced dissociation (SID) of the singly protonated complex of vancomycin antibiotic with cell wall peptide analogue (N(alpha),N(epsilon)-diacetyl-L-Lys-D-Ala-D-Ala) was studied using a 6 T Fourier Transform Ion Cyclotron Resonance Mass Spectrometer (FT-ICR MS) specially configured for SID experiments. The binding energy between the vancomycin and the peptide was obtained from the RRKM modeling of the time- and energy-resolved fragmentation efficiency curves (TFECs) of the precursor ion and its fragments. Molecular dynamics simulations of the vancomycin, peptide, and vancomycin-peptide complex were carried out to explore the low energy conformations. Density functional theory (DFT) calculations of the geometries, proton affinities, and binding energies were performed for several model systems including vancomycin (V), vancomycin aglycon (VA), N(alpha),N(epsilon)-diacetyl-L-Lys-D-Ala-D-Ala, and noncovalent complexes of VA with N-acetyl-D-Ala-D-Ala and V with N(alpha),N(epsilon)-diacetyl-L-Lys-D-Ala-D-Ala. Comparison between the experimental and computational results suggests that the most probable structure of the complex observed in our experiments corresponds to the neutral peptide bound to the vancomycin protonated at the primary amine of the disaccharide group. The experimental binding energy of 30.9 +/- 1.8 kcal/mol is in good agreement with the binding energy of 36.3-42.0 kcal/mol calculated for the model system representing the preferred structure of the complex.     

Broadband excitation pulses for high‐field solid‐state nuclear magnetic resonance spectroscopy

In nuclear magnetic resonance spectroscopy, experimental limits due to the radiofrequency transmitter and/or coil means that conventional radiofrequency pulses (“hard pulses”) are sometimes not sufficiently powerful to excite magnetization uniformly over a desired range of frequencies. Effects due to nonuniform excitation are most frequently encountered at high magnetic fields for nuclei with a large range of chemical shifts. Using optimal control theory, we have designed broadband excitation pulses that are suitable for solid‐state samples under magic‐angle‐spinning conditions. These pulses are easy to implement, robust to spinning frequency variations, and radiofrequency inhomogeneities, and only four times as long as a corresponding hard pulse. The utility of these pulses for uniformly exciting ¹³C nuclei is demonstrated on a 900 MHz (21.1 T) spectrometer. Copyright © 2012 John Wiley & Sons, Ltd.     

Design of an infrared laser pulse to control the multiphoton dissociation of the Fe-CO bond in CO-heme compounds

Optimal control theory is used to design a laser pulse for the multiphoton dissociation of the Fe-CO bond in the CO-heme compounds. The study uses a hexacoordinated iron-porphyrin-imidazole-CO complex in its ground electronic state as a model for CO liganded to the heme group. The potential energy and dipole moment surfaces for the interaction of the CO ligand with the heme group are calculated using density functional theory. Optimal control theory, combined with a time-dependent quantum dynamical treatment of the laser-molecule interaction, is then used to design a laser pulse capable of efficiently dissociating the CO-heme complex model. The genetic algorithm method is used within the mathematical framework of optimal control theory to perform the optimization process. This method provides good control over the parameters of the laser pulse, allowing optimized pulses with simple time and frequency structures to be designed. The dependence of photodissociation yield on the choice of initial vibrational state and of initial laser field parameters is also investigated. The current work uses a reduced dimensionality model in which only the Fe-C and C-O stretching coordinates are explicitly taken into account in the time-dependent quantum dynamical calculations. The limitations arising from this are discussed in Sec. IV.