Molecular recognition of organic guest vapor by solid adamantylcalix[4]arene

A series of inclusion compounds prepared by saturation of the solid adamantyl[4]calixarene (host 1) with vaporous organic guests at 298 K was studied by thermal gravimetry and static headspace GC analyses. The sorption isotherms of guests by host 1, the stoichiometry of the guest—host inclusion compounds, and the Gibbs energies of their formation were determined. The data obtained give evidence of the molecular recognition of the guest shape by host 1. Hence, compound 1 can be used in sensors for recognizing volatile organic compounds with no strong hydrogen or donor-acceptor bonds involved.     

Pseudopolymorphic Clathrate Structures Formed by an Alicyclic Dialcohol Inclusion Host

Dialcohol host 2,7-dimethyltricyclo[4.3.1.0^3,8]undecane-syn-2,syn-7-diol 1 can form either ellipsoidal clathrate or helical tubulate inclusion compounds where only dispersion forces operate between the hosts and guests. The former (tetragonal space group I4₁/acd), built from two interpenetrating sublattices containing both diol enantiomers, encloses the guests in rugby ball-shaped cavities. The latter (trigonal space group P3₁21 or P3₂21), containing only one diol enantiomer, traps the guests within parallel tubes. Which inclusion type is produced is determined by the guest size and shape and, hence, control is possible over these structures. At room temperature, cyclohexane gives the tetragonal structure, but fluorocyclohexane yields the trigonal structure. Chloroform produces both pseudopolymorphs: the tetragonal form at higher and the trigonal form at lower temperatures. Powder and single-crystal structural X-ray data are reported for these clathrate compounds.     

Kinetics of Desolvation of Related Organic Inclusion Compounds

Abstract

This study dealt mainly with the structure-reactivity relationship of selected organic inclusion compounds. The crystal structures of the inclusion compounds of three related hosts, 2,2′–bis(2,7–di-tert-butyl-9–hydroxy-9–fluorenyl)biphenyl, 2,2′–bis (2,7–dichloro-9–hydroxy-9–fluoienyl)biphenyl and 2, 2′–bis(2,7-dibromo-9–hydroxy-9–fluorenyl)biphenyl with 1,4–dioxane (Compound 1), 1,3–dioxane (Compound 2) and 1,3–dioxolane (Compound 3) respectively were elucidated, using single crystal X-ray crystallography. It was found that the guests were either located in channels or constricted channels (cavities), formed by the host framework. The kinetics of desolvation of these compounds were studied and their activation energies were compared.     

Inclusion by a fluorenyl diol host with substituted pyridines

The structures of the inclusion compounds formed by the host 9,9’-(ethyne-1,2-diyl)bis(fluoren-9-01) with pyridine and picolines are similar and display tubular topology. The host discriminates poorly between these guests. The kinetics of desorption of the pyridine compound is governed by the Avrami-Erofe’ev equation A2, with an activation energy of 111(7) kJ mol⁻¹.     

Determination of NMR Lineshape Anisotropy of Guest Molecules within Inclusion Complexes from Molecular Dynamics Simulations

Nonspherical cages in inclusion compounds can result in non‐uniform motion of guest species in these cages and anisotropic lineshapes in NMR spectra of the guest. Herein, we develop a methodology to calculate lineshape anisotropy of guest species in cages based on molecular dynamics simulations of the inclusion compound. The methodology is valid for guest atoms with spin 1/2 nuclei and does not depend on the temperature and type of inclusion compound or guest species studied. As an example, the nonspherical shape of the structure I (sI) clathrate hydrate large cages leads to preferential alignment of linear CO₂ molecules in directions parallel to the two hexagonal faces of the cages. The angular distribution of the CO₂ guests in terms of a polar angle θ and azimuth angle ? and small amplitude vibrational motions in the large cage are characterized by molecular dynamics simulations at different temperatures in the stability range of the CO₂ sI clathrate. The experimental ¹³C NMR lineshapes of CO₂ guests in the large cages show a reversal of the skew between the low temperature (77 K) and the high temperature (238 K) limits of the stability of the clathrate. We determine the angular distributions of the guests in the cages by classical MD simulations of the sI clathrate and calculate the ¹³C NMR lineshapes over a range of temperatures. Good agreement between experimental lineshapes and calculated lineshapes is obtained. No assumptions regarding the nature of the guest motions in the cages are required.     

Clathrate and Inclusion Compounds. Part 13 [1]. Vibrational and NMR Spectroscopic Studies of Carboxylic Acid Guests in Urea

Infrared, Raman and solid state¹³C NMR spectra have been recorded for arange of inclusion compounds of urea containingstraight chain aliphatic carboxylic acids(butyric – decanoic) as guests. Inclusioncompounds are not formed with formic, acetic andpropionic acids. Thiourea does not forminclusion compounds with any of the C1 to C10acids. The vibrational and NMR data support theconclusion that the acids are present ashydrogen bonded dimers in the channels of thehost. The alkyl chain ¹³C chemical shiftvalues are very different from those of acidguests in the cavities formed in Dianin'scompound. These suggest that the alkyl chainsare present in the all-trans conformation,although weak bands observed in the spectrum ofthe decanoic acid inclusion compound lend somesupport to suggestions based on MM calculationsthat other conformations might be present.     

Inclusion complexes and photostability of UV filters and curcumin with beta-cyclodextrin polymers: effect on cross-linkers

Beta-cyclodextrin polymers (pbCD) cross-linked by epichlorohydrin (pbCDE) and citric acid (pbCDC) were prepared in this work. The inclusion complexes of pbCDE and pbCDC with curcumin and two commercial UV filters, 2-ethylhexyl-p-methoxycinnamate (EHMC) and 4-tert-butyl-4′-methoxydibenzoylmethane (DBM) were investigated. The UV absorption of these three compounds observed in water indicated that the water solubility of these three hydrophobic compounds increased. The amount of EHMC was higher in both pbCDE and pbCDC than curcumin and DBM, respectively. The photostability of these three compound inclusion complexes with pbCDE and pbCDC were also studied in water and ethylene glycol. It was found that the photostability of the three compounds improved upon formation of the inclusion complex with pbCDE in an aqueous and ethylene glycol solution. The acidity of the crosslink moiety effects to the inclusion complex formation and the photostability of the guests suggesting that more acidity of citric acid decreased the formation and stability of all guest compounds.     

环糊精包结物包结比的测定

由于环糊精具有“外亲水,内疏水”的独特性质,它可以包结许多物质而形成主客体配合物,从而改变物质的特性,所以被广泛应用于各行各业中,包结物的包结比是决定包络物性质的一个重要参数,在查阅大量文献的基础上,总结出环糊精包结反应过程中测定主客体间的包结比的方法,并对其进行了较详细的介绍。     

包结法拆分1,1'-联-2-萘酚:包结物的晶体结构及CD光谱

以D/L-缬氨醇为原料,通过二步反应得到价廉易得的拆分剂碘化(R)/(S)-N,N,N-三甲基-1-羟基-3-甲基-2-丁铵,采用包结拆分法,成功实现了对1,1′-联-2-萘酚(BINOL)的拆分.对具有(R)-构型的季铵盐与(R)-BINOL在甲醇中所形成包结物的晶体结构分析结果表明:I-离子桥联主体(拆分剂)的醇羟基和客体(BINOL)的酚羟基形成O-H…I-氢键,以及相邻层的主客体分子之间的C-H…O氢键相互作用是在包结物中实现手性识别的关键.同时对两个包结物的溶液和固体圆二色(CD)光谱进行了研究.     

Photoactivity with in Cyclodextrin Cavities: Inclusion Complexes of Anils 1

Abstract

Photochromic percinnamoylated cyclomaltoheptaose (β-cyclodextrin) solid inclusion complexes with guests N-salicylideneaniline and N-5-chlorosalicylideneaniline were prepared and characterized. The guests of these inclusion complexes can be easily “locked” with UV irradiation in the solid state by formation of cyclobutane bridges among the percinnamate residues rendering them more stable than before and stronger in fluorescence. The reverse reaction, rupture of the cyclobutane bridges, has not been achieved in the solid state and more work toward this goal is in progress.

     

Clathrates with mixed guests

Investigation of the selectivities of two diol organic hosts for pairs of small organic guests gave interesting results which could be correlated with the crystal structures of the inclusion compounds containing mixtures of the two guests; these structures were compared with those of the single guest inclusion compounds.     

Inclusion of quinolines by binaphthol: structures and selectivity

The enclathration selectivity of the host compound 2,2'-dihydroxyl-1,1'-binaphthyl, BINAP, towards the guests quinoline (Q), 2-methylquinoline (2MeQ), 6-methylquinoline (6MeQ) and 8-methylquinoline (8MeQ) were established by competition experiments as: BINAP.2(2MeQ) > BINAP.2Q > BINAP.2(8MeQ) > BINAP.2.5(6MeQ). The crystal structures of the inclusion compounds were elucidated and are all stabilised by (host)O-H...N(guest) hydrogen bonds. Thermal analysis yields the same sequence with respect to the relative stabilities. pH Control was employed to dramatically modify the selectivity profile of the pair of 2-methylquinoline (2MeQ) and 8-methylquinoline (8MeQ).     

Inclusion of thiazyl radicals in porous crystalline materials

The incorporation of benzodithiazolyl (BDTA) and methylbenzodithiazolyl (MBDTA) radicals into porous hybrid frameworks via gas phase diffusion revealed that inclusion appeared selective for the MIL53(Al) framework against a range of other potential hosts. Both PXRD and EPR studies are consistent with retention of a π*-π* dimer motif for BDTA in MIL53(Al)@BDTA whereas MBDTA in MIL53(Al)@MBDTA appears to be monomeric. The guests are readily released by the addition of solvent (CH(2)Cl(2)).     

Novel Host Compounds, 1,1′-Binaphthyl-2,2′-Dihydroxy-5,5′- and 6,6′-Dicarboxylic Acid, which Trap Guest Molecules Tightly in their Inclusion Crystals

The host compounds 1,1’-binaphthyl-2,2′-dihydroxy-5,5′-dicarboxylic acid (1) and 1,1′-binaphthyl-2,2′-dihydroxy-6,6′-dicarboxylic acid (2) have been synthesized, and their inclusion properties have been studied. Inclusion complexes formed by 1 and 2 with volatile guests such as acetone and methanol release the guests only at much higher temperatures than their boiling points. The crystal structures of the inclusion complexes have been determined from single crystal X-ray diffraction data and show different host lattices.     

β-环糊精与有机胺之间包合作用的理论与实验研究

通过实验和理论计算方法研究了β-环糊精(CD)与乙二胺1及它的三个类似物: 二乙烯三胺2、三乙胺3和乙二胺四乙酸4之间的包合作用. 利用旋光法确定了β-CD与客体分子形成1:1型主–客体包合物, 在298.2 K下测定了包合物在水中的稳定常数(K). 采用半经验PM3方法考察了β-CD与短链脂肪胺1~7、环状脂肪胺8~11以及芳香胺12~13的分子间结合能力, 报道了β-CD与这些客体分子间的包合络合过程并讨论了这些包合体系之间的包合差异性. 变形能和水合能对包合体系的相互作用能的贡献均相当小. β-CD包合物的稳定性取决于主、客体分子之间的尺寸匹配. 对于β-CD与客体1~4形成的包合物而言, 旋光法测定的包合物的K值的顺序与PM3计算得到的包合物络合能绝对值的排序有很好的一致性.     

Anthracene Based Bulky Diol Hosts. Crystal Structures of a Free Host and of Inclusion Compounds with Dipolar Guests

X-ray crystal structures are reported of a free host compound 1, comprising two diphenylmethanol terminal groups attached to a central 9,10-ethynyl substituted anthracene unit, and of three inclusion compounds of a fluoren-9-ol substituted analogous host 2 with acetone, dimethyl sulphoxide (DMSO) and dimethylformamide (DMF) as guest, respectively. Despite the presence of two hydroxyl groups in 1, there is no O–H...O hydrogen bond between the molecules in the guest free crystal – only weaker C–H...O interactions and van der Waals' type connections. In the inclusion compounds of 2, H-bonded 1:2 host–guest associates are formed, where each of the host hydroxyl groups binds to a guest oxygen atom. The orientations of the host–guest connections in these complexes vary, being E for acetone and Z for both DMSO and DMF guests, relative to the host anthracene unit. The DMSO and DMF inclusion compounds of 2 proved to be isostructural.     

Crystalline Inclusion Compounds Derived from Derivatives of Mandelic Acid. Host Synthesis, Inclusion Formation, and X-Ray Structures of a Free Host Compound and of DMSO Inclusion Complexes in Both Racemic and Optically Resolved Forms

New chiral host compounds based on mandelic acid derivatives having methyl (6a, b and 8a, b) or bromo substituents (7a, b) attached to the phenyl ring of mandelic acid and involving additional aromatic groups were synthesized. The inclusion properties of both the racemic and the optically resolved host species are reported, including solvent co-crystallization as well as chiroselective and vapour sorptive inclusion. The structures of the free racemic host compound 6b and of the DMSO inclusion compounds of optically resolved and racemic 8 (8a and 8b, respectively) have been determined by X-ray analysis. Enantiomeric pairs of molecules in 6b form centro-symmetric dimers by mutual hydrogen bonding of one hydroxyl group while the other is involved in O-–H ... interactions. The guest molecules in the DMSO complexes of 8a and 8b are bound via hydrogen bonds to two host molecules related by translation along crystallographic axes. Parallels to previous hosts of this type are drawn.     

New Exo-Functional Cyclophane Hosts. Synthesis and Crystal Structures of Inclusion Compounds

The new cyclophane type host compounds 1–3, containing rigid aromatic units and two exo-topic carboxylic acid functions, have been synthesized. Crystalline solvent inclusions, involving the dicarboxylic acid hosts and their corresponding ester intermediates 6 (a–c), namely 1·DMSO (1:4), 2·pyridine (1:3), 3·pyridine (1:4), 6a·pyridine (1:2) and 6a·benzene (1:2), have been prepared and studied using X-ray diffraction on single-crystals. Moreover, X-ray structure analyses of the solvent-free crystals of the 6 (a, b) intermediates were also carried out for comparison. Co-crystals of the carboxylic hosts 1–3 contained H-bonded 1:2 host-guest associates as building blocks, together with additional space-filling guests, whereas only loosely bounded space-filling solvent molecules were found in the two solid inclusion compounds of the 6a cyclophane ester host. In addition to the mentioned conventional H-bond interactions between carboxylic hosts and their guests, the crystal structures proved to be held together by relatively weak C–H…O bonds besides the ordinary van der Waals' interactions. Packing relations, and the effects of structural variations, guest molecules and anisotropic packing forces on the conformation of the semi-rigid cylcophane ring have been discussed and compared in seven crystal structures.