A HeI photoelectron spectroscopy and theoretical study of 2,6-dichloropyrazine, 2,3-dichloropyrazine, 4,6-dichloropyrimidine and 3,6-dichloropyridazine

The electronic structures of C₄H₂Cl₂N₂ isomers have been studied by HeI photoelectron spectroscopy (PES) combined with the outer valence Green’s function (OVGF) calculations at 6-311++G(d,p) basis sets. The vertical first ionization potentials for 2,6-dichloropyrazine, 2,3-dichloropyrazine, 4,6-dichloropyrimidine and 3,6-dichloropyridazine are determined to be 9.93, 9.89, 10.45 and 10.07 eV, respectively, and the PE spectra were assigned based on molecular orbital analysis and by comparison with related compounds. The effects of chlorine substituent and different positions of nitrogen atoms in these C₄H₂Cl₂N₂ isomers have been carefully analyzed by comparing the C₄H₂Cl₂N₂ isomers with their matrixes (pyrazine, pyridazine, pyrimidine). The inductive effect of chlorine substituent leads to the stabilization of the nitrogen lone pair orbitals. The resonance effect predominates over the inductive effect, and the consequence is the destabilization of the π orbitals. Owing to the different positions, the effects of nitrogen atoms are different and lead to the different sequence of π orbitals.     

Gaseous nitryl azide N4O2: A joint theoretical and experimental study

Gaseous nitryl azide N₄O₂ is generated by the heterogeneous reaction of gaseous ClNO₂ with freshly prepared AgN₃ at −50 °C. The geometric and electronic structure of the molecule in the gas phase has been characterized by in situ photoelectron spectroscopy (PES) and quantum chemical calculations. The experimental first vertical ionization energy of N₄O₂ is 11.39 eV, corresponding to the ionization of an electron on the highest occupied molecular orbital (HOMO) {4a″(π_{nb(N4–N5–N6)})}⁻¹. An apparent vibrational spacing of 1600 ± 60 cm⁻¹ (ν_asO1N2O3) on the second band at 12.52 eV (π_{nb(O1–N2–O3)}) further confirms the preference of energetically stable chain structure in the gas phase. To complement the experimental results, the potential-energy surface of this structurally novel transient molecule is discussed. Both calculations and spectroscopic results suggest that the molecule adopts a trans-planar chain structure, and a five-membered ring decomposition pathway is more favorable.     

FC(O)SNCO的电子结构和光电离解离过程

由于拥有―C(O)S―和―NCO基团, FC(O)SNCO的分子和电子结构是非常有趣的. 利用FC(O)SCl和AgNCO制备了FC(O)SNCO,并利用HeI光电子能谱(PES)、光电离质谱(PIMS)以及理论计算研究了其分子和电子结构. 通过将实验、理论计算以及自然键轨道(NBO)分析结合起来, 获得了FC(O)SNCO的最稳定分子构型. 利用外壳层格林函数(OVGF)方法以及与相似化合物的比较, 对其光电子能谱进行了指认. 理论计算表明,对于中性分子最稳定的构型为syn-syn非平面构型, 而电离后的离子最稳定构型为syn-syn平面构型. 实验结果表明, 第一电离能来自于S的孤对电子轨道, 为10.33 eV. 第二至第六电离能分别为12.03、13.23、13.77、14.78、15.99 eV, 并对这些电离能进行了指认. 在光电离质谱中产生了六个质谱峰, 分别为SN⁺、FC(O)⁺、SNCO⁺、FC(O)SN⁺、C(O)SNCO⁺、FC(O)SNCO^+·, 其中FC(O)SNCO^+·的峰是最强峰. 结合HeI光电子能谱和理论计算, 对PIMS进行了分析,并研究了可能的电离和解离过程并对其进行了讨论.     

An electronic structure investigation of the BNO-BON-NBO system

The potential energy hypersurface of the ground triplet states of the BNO-BON-NBO system has been investigated using traditional ab initio electronic structure theory. The molecules studied have the molecular formula BON and include three linear and three angular species, and two transition states for the isomerization of an angular N-B-O to an angular B-O-N and a linear B-NO, respectively. All stationary points on the BNO-BON-NBO isomerization potential energy surface have been characterized employing UMP2, UMP4, and Gaussian-2 (G2) theory with the 6-311G(d), 6-311G(2d), and TZ2P basis sets. The isomerization for an angular N-BO to the linear B-NO has a lower energy barrier than that of the former to an angular B-ON. Energetics are presented with G2 energies. Two sets of resonance structures for both bent B-NO (boron nitrosyl) and B-ON (boron isonitrosyl) were proposed and the bonding in the two species was analyzed. For the purpose of comparison, the density functional theory based hybrid methods B3LYP/6-311G(d) and B3LYP/TZ2P have also been applied to both geometry optimization and single-point calculations. It is found that the B3LYP prediction of the nature of the linear B-O is contradictory to that made by all MPn(n = 2 and 4) calculations. The cause for this contradiction is discussed.     

Reinvestigation of the GaMn structure and theoretical studies of its electronic and magnetic properties

The crystal structure of the binary gallide compound GaMn is reinvestigated using X-ray diffraction. The structure is quite different from that proposed previously. Although GaMn is reported to crystallize with the Al₈Cr₅ structure type, space group R3m, we found that the centrosymmetric space group , with a=12.605(2) Å and c=8.0424(11) Å, was more accurate. Moreover, the atomic positions and the atomic displacement parameters, which are missing in the previous study, are now refined. Thereafter, band structure calculations have been performed using the TB-LMTO-ASA method to understand the electronic and magnetic properties of this compound. Analyses from the band structure, the density of states and the magnetic moments obtained using spin-polarized calculations show the stability of two different magnetic models relative to the nonmagnetic one.     

Exocyclic push–pull conjugated compounds. Part 3. An experimental NMR and theoretical MO ab initio study of the structure, the electronic properties and barriers to rotation about the exocyclic partial double bond in 2-exo-methylene- and 2-cyanoimino-quinazolines and -benzodiazepines

The structure of a number of 2-exo-methylene substituted quinazolines and benzodiazepines, respectively, 1, 3a,b, 4 (X=–CN,–COOEt) and their 2-cyanoimino substituted analogues 2, 3c,d (X=–CN,–SO₂C₆H₄–Me(p) was completely assigned by the whole arsenal of 1D and 2D NMR spectroscopic methods. The E/Z isomerism at the exo-cyclic double bond was determined by both NMR spectroscopy and confirmed by ab initio quantum chemical calculations; the Z isomer is the preferred one, its amount proved dependent on steric hindrance. Due to the push–pull effect in this part of the molecules the restricted rotation about the partial C²,C¹¹ and C²,N¹¹ double bonds, could also be studied and the barrier to rotation measured by dynamic NMR spectroscopy. The free energies of activation of this dynamic process proved very similar along the compounds studied but being dependent on the polarity of the solvent. Quantum chemical calculations at the ab initio level were employed to prove the stereochemistry at the exo-cyclic partial double bonds of 1–4, to calculate the barriers to rotation but also to discuss in detail both the ground and the transition state of the latter dynamic process in order to better understand electronic, inter- and intramolecular effects on the barrier to rotation which could be determined experimentally. In the cyanoimino substituted compounds 2, 3c,d, the MO ab initio calculations evidence the isomer interconversion to be better described by the internal rotation process than by the lateral shift mechanism.     

IR, Raman and theoretical ab initio RHF study of aminoglutethimide — an anticancer drug

A comparative analysis of the IR and Raman spectra of aminoglutethimide (AG) dissolved in CCl₄, CHCl₃ and CH₃CN was performed. Most of the absorption bands were assigned to characteristic group vibrations with the use of the IR and Raman spectra of deuterated AG, glutethimide, N-methyl glutethimide and glutarimide. The AG samples very weakly interacting with the environment were studied with the use of the Ar matrix isolation IR spectra. For comparison, the IR and Raman spectra of the crystalline samples formed by hydrogen-bonded AG molecules were recorded. The spectra were analyzed also in terms of normal modes and the harmonic approximation with the use of the ab initio restricted Hartree-Fock theory. It was found that increasing the solute concentration in CCl₄ and CHCl₃ leads to formation of the autoassociates. In CH₃CN the solute–solvent AG–CH₃CN dimers occur. Possible structures of the associates were theoretically studied on the model systems: the centrosymmetric glutarimide dimer and the linear AG–CH₃CN dimer. By a comparison of the theoretical and experimental spectra we were able to identify several peaks originating from the solute–solvent interactions.     

Spectral-product methods for electronic structure calculations

Progress is reported in development, implementation, and application of a spectral method for ab initio studies of the electronic structure of matter. In this approach, antisymmetry restrictions are enforced subsequent to construction of the many-electron Hamiltonian matrix in a complete orthonormal spectral-product basis. Transformation to a permutation-symmetry representation obtained from the eigenstates of the aggregate electron antisymmetrizer is seen to enforce the requirements of the Pauli principle ex post facto, and to eliminate the unphysical (non-Pauli) states spanned by the product representation. Results identical with conventional use of prior antisymmetrization of configurational state functions are obtained in applications to many-electron atoms. The development provides certain advantages over conventional methods for polyatomic molecules, and, in particular, facilitates incorporation of fragment information in the form of Hermitian matrix representatives of atomic and diatomic operators which include the non-local effects of overall electron antisymmetry. An exact atomic-pair expression is obtained in this way for polyatomic Hamiltonian matrices which avoids the ambiguities of previously described semi-empirical fragment-based methods for electronic structure calculations. Illustrative applications to the well-known low-lying doublet states of the H₃ molecule in a minimal-basis-set demonstrate that the eigensurfaces of the antisymmetrizer can anticipate the structures of the more familiar energy surfaces, including the seams of intersection common in high-symmetry molecular geometries. The calculated H₃ energy surfaces are found to be in good agreement with corresponding valence-bond results which include all three-center terms, and are in general accord with accurate values obtained employing conventional high-level computational-chemistry procedures. By avoiding the repeated evaluations of the many-centered one- and two-electron integrals required in construction of polyatomic Hamiltonian matrices in the antisymmetric basis states commonly employed in conventional calculations, and by performing the required atomic and atomic-pair calculations once and for all, the spectral-product approach may provide an alternative potentially efficient ab initio formalism suitable for computational studies of adiabatic potential energy surfaces more generally. Contribution to the Mark S. Gordon 65th Birthday Festschrift Issue.     

Experimental and theoretical study of the atmospherically important O2-H2O complex

The theoretically predicted water-oxygen van der Waals adduct has been experimentally confirmed by vibrational characterization using matrix isolation spectroscopic studies at 10 K. Vibrational bands for asymmetric and symmetric OH-stretching for this adduct have been found at 3728 cm(-1) and 3639 cm(-1), respectively. Theoretical calculations performed with Gaussian 98 software at the MP2/6-311++G(2d,2p) level of theory support the alternative structure of the hydrated complex proposed by this study.     

Ionization and protonation of NaC3: a theoretical study

A theoretical study of the NaC₃⁺ and NaC₃H⁺ systems has been carried out. Predictions have been made for some of the molecular properties, which could help in their possible experimental detection. The predicted global minimum for NaC₃⁺ is the linear isomer 1s (¹Σ). The lowest-lying triplet state is a three-membered ring 3t (³B₂), lying about 27.1 kcal/mol higher in energy than the predicted global minimum at the G2(P) level. In the case of NaC₃H⁺, there are two isomers that lie close in energy: a linear species, 1d (²Π), and a three-membered ring, 4d (²A′). The most reliable levels of theory employed predict that 1d (²Π) is the global minimum, whereas 4d (²A′) is predicted to lie 5.3 kcal/mol higher in energy at the G2(P) level. In any case it seems that both structures could be accessible to experimental detection. Low ionization potential and high proton affinities are obtained for the most stable NaC₃ isomers. Therefore, if present in the interstellar medium, NaC₃ should be easily ionized and would react quite easily to give the protonated species.     

Matrix-isolation FT-IR study and theoretical calculations of the vibrational, tautomeric and H-bonding properties of hypoxanthine

The neutral compound hypoxanthine is investigated using the technique of matrix-isolation FT-IR spectroscopy combined with density functional theory (DFT) and ab initio methods. Two theoretical methods (RHF and DFT/B3-LYP) are compared for vibrational frequency prediction, and four methods (RHF//RHF, MP2//RHF, DFT//DFT and MP2//DFT) for prediction of the relative energies of the tautomers and the interaction energies of the complexes. All the possible tautomeric forms have been considered theoretically, and the results indicate that two oxo forms (O17 and O19) and one hydroxy form (H9-r1) are the three most stable forms. The experimental FT-IR spectra are consistent with this prediction, and nearly all the characteristic spectral features of these forms have been identified in the spectrum. A theoretical study of the H-bonded complexes of these three tautomers with water is also performed. Several structures have been found for each form and the results demonstrate that the closed complexes with two H-bonds are the most stable systems due to the H-bond cooperative effect.     

A theoretical study of the Si-O bond in disiloxane and related molecules

Summary A comparison of semi-empirical (MNDO) and ab initio (GAUSSIAN) calculations for disiloxane and related molecules is given. The STO-3G^* basis set well reproduced the observed geometries of disiloxane (*), DZP, TZVP) gave much poorer agreement with the observed geometries.Comparison of the STO-3G^* and the STO-3G basis sets demonstrates the necessity of including d-orbitals on the silicon. However, the semi-empirical MNDO program gave, despite the absence of d-orbitals, a better approximation to the molecular geometry than the complex ab initio basis sets.Force field parameters have been calculated for k_SiOSi, k_OSiO, 0.089 and 0.73 mdyneÅ/rad², and the SiOSiO torsion which has a V₁ potential of –0.68 kcal/mol. In addition, the HSiOH torsion is shown to have a three-fold potential of 0.78 kcal/mol. These are profoundly different from the analogous carbon-oxygen force constants, demonstrating that C-O parameters cannot be transferred to the corresponding Si-O systems.     

Spectroscopic and theoretical study of the molecular and electronic structures of a terthiophene-based quinodimethane.

The UV/Vis, infrared absorption, and Raman scattering spectra of 3',4'-dibutyl-5,5"-bis(dicyanomethylene)-5,5"-dihydro-2,2':5',2"-terthiophene have been analyzed with the aid of density functional theory calculations. The compound exhibits a quinoid structure in its ground electronic state and presents an intramolecular charge transfer from the terthiophene moiety to the C(CN)2 groups. The molecular system therefore consists of an electron-deficient terthiophene backbone end-capped with electron-rich C(CN)2 groups. The molecule is characterized by a strong absorption in the red, due to the HOMO-->LUMO pi-pi* electronic transition of the terthiophene backbone that shifts hypsochromically on passing from the solid state to solution and with the polarity of the solvent. The analysis of the vibrational spectra confirms the structural conclusions and supports the existence of an intramolecular charge transfer. Vibrational spectra in several solvents and as a function of temperature have also been studied. Significant frequency upshifts of the vibrations involved in the pi-electron-conjugated pathway have been noticed upon solution in polar solvents and with the lowering of the temperature. Finally, we propose a quinoid molecule as a reliable structural and electronic model for dication species in doped oligothiophenes or for bipolaron charged defects in doped polythiophene.     

Influence of the ligand structure of hafnocene polymerization catalysts: A theoretical study on chain termination reactions in ethene polymerization

Ligand effects on chain termination reactions in hafnocene-catalyzed ethene polymerization process have been systematically studied by quantum chemical methods. β-hydrogen transfer to metal, β-hydrogen transfer to monomer and hydrogenolysis were studied for 27 hafnocenes, initiating the chain termination reactions after insertion of the second ethene monomer. The results of the calculations were studied as a function of the ligand structure, focusing on the effects of various ancillary ligands, ligand substituents and bridging units. The ligand effects on chain termination reactions are strongly affected by combined effects of various structural units, in particular, in the cases of β-hydrogen transfer to monomer and hydrogenolysis. The results are expected to aid in design and development of new hafnocene polymerization catalysts.     

Computational studies of the structure and vibrational spectra of hexafluorodisilane

Ab initio calculations predict that D_3d symmetry of Si₂F₆ is more stable than D_3h symmetry. The calculated potential barrier to internal rotation was 0.77, 0.73 and 0.78 kcal/mol using HF/6-31G*, B3LYP/6-31G* and MP2/6-31G* methods respectively, which was in good agreement with the experimental value between 0.51±0.10 and 0.73±0.14 kcal/mol. The optimized geometries, harmonic force fields, infrared intensities, Raman activities, and vibrational frequencies are reported for D_3d symmetry of Si₂F₆ from HF/6-31G* and B3LYP/6-31G*. A normal coordinate analysis was carried out. The average error between the scaled DFT frequencies obtained from the B3LYP/6-31G* calculation and observed frequencies was 4.2 cm⁻¹ and the average error between the scaled HF and observed frequencies was 2.2 cm⁻¹.     

Investigation of ion-pairing phenomenon in BaF2 aqueous solution: Experimental and theoretical studies

The ion-pair association constant values, related to the reaction Ba²⁺ + F⁻ ? [BaF]⁺, are determined by means of NMR spectroscopy. The values for thermodynamic functions of the ion-pairing process are calculated on the basis of the NMR results. In addition, the association entropy has been found to be dependent on temperature. Comparing the experimental data and Fuoss theory, it is found that [BaF]⁺ contact ion-pair is formed in the BaF₂ aqueous solution. Also, hydration of barium-fluoride ion-pair is investigated by the DFT method. The hydration number of barium-fluoride ion-pair is determined by comparing the experimental and theoretical results. The effect of number of water molecules on the properties of ion-pairs is investigated by determining NQR and NMR parameters. Also, the relation between the chemical shifts and the energy gap between the highest occupied molecular orbital (HOMO) and low-lying virtual molecular orbital (LUMO) is investigated.     

Torsion potentials and electronic structure of trifluoromethoxy- and trifluoromethylthiobenzene: an ab initio study

Potential functions of internal rotation about the C_sp²X bonds in molecules C₆H₅XCF₃ (X=O, S) were calculated at the second-order Møller-Plesset perturbation level of theory with 6-31G(d) basis set. The profile of the potential function and the rotation barrier (ΔE^#=3.0 kJ/mol) found for C₆H₅OCF₃ suggest that, depending on experimental conditions, there can be either free rotation about the C_sp²O bond or the conformational equilibrium is shifted to the side of the orthogonal form. The rotational barrier for C₆H₅SCF₃ is 14.7 kJ/mol and the molecule exists in the stable orthogonal conformation. The nature of hybridization, energy and population of lone electron pairs (LPs) on the oxygen and sulfur atoms were considered by using the Natural Bond Orbital (NBO) method. The energy of interactions of the LPs with antibonding π^∗-orbitals of the aromatic moiety were estimated for different conformations. The distribution of electron density in the molecules was discussed. The results were compared with analogous calculations on the molecules C₆H₅XCH₃.     

Using Raman Spectroscopy and ab initio Calculations to Investigate Intermolecular Hydrogen Bonds in Binary Mixture (Tetrahydrofuran+Water)

We analyzed the properties and structures of the hydrogen-bonded complexes of tetrahydrofuran(THF) and water by means of experimental Raman spectra and ab initio calculations.The optimized geometries and vibrational frequencies of the neat THF molecule and its hydrogen-bonded complexes with water(THF/H2O) were calculated at the MP2/6-311+G(d,p) level of theory.We found that the intermolecular hydrogen bonds which are formed from the binary mixtures of the neat THF and water with different molar ratios could...