Oxidation of 2'-deoxyguanosine 5'-monophosphate photoinduced by pterin: type I versus type II mechanism

UV-A radiation (320-400 nm) induces damage to the DNA molecule and its components through different photosensitized reactions. Among these processes, photosensitized oxidations may occur through electron transfer or hydrogen abstraction (type I) and/or the production of singlet molecular oxygen ((1)O2) (type II). Pterins, heterocyclic compounds widespread in biological systems, participate in relevant biological processes and are able to act as photosensitizers. We have investigated the photosensitized oxidation of 2'-deoxyguanosine 5'-monophosphate (dGMP) by pterin (PT) in aqueous solution under UV-A irrradiation. Kinetic analysis was employed to evaluate the participation of both types of mechanism under different pH conditions. The rate constant of (1)O2 total quenching (k(t)) by dGMP was determined by steady-state analysis of the (1)O2 NIR luminescence, whereas the rate constant of the chemical reaction between (1)O2 and dGMP (k(r)) was evaluated from kinetic analysis of concentration profiles obtained by HPLC. The results show that the oxidation of dGMP photosensitized by PT occurs through two competing mechanisms that contribute in different proportions depending on the pH. The dominant mechanism in alkaline media involves the reaction of dGMP with (1)O2 produced by energy transfer from the PT triplet state to molecular oxygen (type II). In contrast, under acidic pH conditions, where PT and the guanine moiety of dGMP are not ionized, the main pathway for dGMP oxidation involves an initial electron transfer between dGMP and the PT triplet state (type I mechanism). The biological implications of the results obtained are also discussed.     

Barrier-free proton transfer in the valence anion of 2'-deoxyadenosine-5'-monophosphate. II. A computational study

The propensity of four representative conformations of 2(')-deoxyadenosine-5(')-monophosphate (5(')-dAMPH) to bind an excess electron has been studied at the B3LYP6-31++G(d,p) level. While isolated canonical adenine does not support stable valence anions in the gas phase, all considered neutral conformations of 5(')-dAMPH form adiabatically stable anions. The type of an anionic 5(')-dAMPH state, i.e., the valence, dipole bound, or mixed (valence/dipole bound), depends on the internal hydrogen bond(s) pattern exhibited by a particular tautomer. The most stable anion results from an electron attachment to the neutral syn-south conformer. The formation of this anion is associated with a barrier-free proton transfer triggered by electron attachment and the internal rotation around the C4(')-C5(') bond. The adiabatic electron affinity of the a_south-syn anion is 1.19 eV, while its vertical detachment energy is 1.89 eV. Our results are compared with the photoelectron spectrum (PES) of 5(')-dAMPH(-) measured recently by Stokes et al., [J. Chem. Phys. 128, 044314 (2008)]. The computational VDE obtained for the most stable anionic structure matches well with the experimental electron binding energy region of maximum intensity. A further understanding of DNA damage might require experimental and computational studies on the systems in which purine nucleotides are engaged in hydrogen bonding.     

离子色谱法测定增味剂中的5′-肌苷酸二钠和5′-鸟苷酸二钠

 建立了增味剂中5′-肌苷酸二钠和5′-鸟苷酸二钠的离子色谱分析方法。采用lonPacASll阴离子交换色谱柱,以20mmol／LNa2CO3一体积分数为15％的甲醇溶液为淋洗液,检测波长254um。方法已用于实际样品的测定。     

Photoelectron spectroscopy of the parent anions of the nucleotides, adenosine-5'-monophosphate and 2'deoxyadenosine-5'-monophosphate

The parent anions of the nucleotides, adenosine-5(')-monophosphate (AMPH) and 2(')deoxyadenosine-5(')-monophosphate (dAMPH) were generated in a novel source and their photoelectron spectra recorded with 3.49 eV photons. Vertical detachment energy (VDE) and the adiabatic electron affinity (EA(a)) values were extracted from each of the two spectra. Concurrently, Kobylecka et al. [J. Chem. Phys. 128, 044315 (2008)] conducted calculations which explored electron attachment to dAMPH. Based on the agreement between their calculated and our measured VDE and EA(a) values, we conclude that the dAMPH(-) anions studied in these experiments were formed by electron-induced, intramolecular, (barrier-free) proton-transfer as predicted by the calculations. Given the similarities between the photoelectron spectra of dAMPH(-) and AMPH(-), it is likely that AMPH(-) can be described in the same manner.     

One-electron oxidation of 2'-deoxyadenosine-5'-phosphate: comparisons of theoretical calculations with experimental values

A recent paper by Hou et al. (Hou, R.; Gu, J.; Xie, Y.; Yi, X.; Schaefer, H. F. J. Phys. Chem. B 2005, 109, 22053) on 2'-deoxyadenosine-5'-phosphate (5'-dAMP) reports calculations on one-electron oxidation of the 5'-dAMP anion. The paper presents a very interesting observation that, for the radical produced by electron removal, the unpaired spin density resides on both the phosphate and the adenine base moieties. There are also indications that this radical has a weakened C5'-O5' bond, and it is said that this may be the origin of a single-strand break in DNA. New calculations have been performed to show that the spin density on the phosphate is dependent on the charge on the phosphate. The use of the B3LYP method with the 6-31G(d) basis set yields results very similar to those obtained with the much larger B3LYP/DZP++ basis set in computing the structures of one electron oxidized 5'-dAMP. New calculations on the isotropic hyperfine couplings in 5'-dAMP are presented to show under just what conditions one might expect to see small amounts of unpaired spin density on the phosphates. Results show that this may occur in gas-phase studies of nucleotides but, most likely, not in DNA.     

Photooxidation of 2'-deoxyguanosine 5'-monophosphate in aqueous solutions

Mass spectrometric and ultraviolet absorption spectral evidence are presented for the assignment of structures to three products detected in the reaction mixtures formed upon the photolysis of aqueous solutions of the nucleotide 2'-deoxyguanosine 5'-monophosphate (dGMP) with light of wavelengths >270 nm. The products for which structures are assigned are spiroiminodihydantoin 2'-deoxyribonucleotide (1), 2,2-diamino-4-([2-deoxy-5-monophosphate-beta-D-erythro-pentofuranosyl]amino)-5-(2H)-oxazolone (oxazolone 2'-deoxyribonucleotide, 2) and 2-amino-5-([2-deoxy-5-monophosphate-beta-D-erythro-pentofuranosyl]amino)-4H-imidazol-4-one (imidazolone 2'-deoxyribonucleotide, 3). These results, when combined with mechanistic data presented in an earlier communication, provide support for the proposal that the irradiation of dGMP with UVB light leads to the formation of singlet oxygen. The UV absorption spectral properties of the imidazolone make this product a reasonable candidate to rationalize the autosensitization of dGMP degradation reported in the earlier communication.     

Radicals produced by gamma-irradiation of hyperquenched glassy water containing 2'-deoxyguanosine-5'-monophosphate

Hyperquenched glassy water (HGW) has been suggested as the best model for liquid water, to be used in low-temperature studies of indirect radiation effects on dissolved biomolecules (Bednarek et al. J. Am. Chem. Soc. 1996, 118, 9387). In the present work, these effects are examined by X-band electron spin resonance spectroscopy (ESR) in gamma-irradiated HGW matrix containing 2'-deoxyguanosine-5'-monophosphate. Analysis of the complex ESR spectra indicates that, in addition to OH(*) and HO2(*) radicals generated by water radiolysis, three species are trapped at 77 K:(i) G(C8)H(*) radical, the H-adduct to the double bond at C8; (ii) G(- *) radical anion, the product of electron scavenging by the aromatic ring of the base; and (iii) dR(-H)(*) radicals formed by H abstraction from the sugar moiety, predominantly at the C'5 position. We discuss the yields of the radicals, their thermal stability and transformations, as well as the effect of photobleaching. This study confirms our earlier suggestion that in HGW the H atom addition/abstraction products are created at 77 K in competition with HO2(*) radicals, in a concerted process following ionization of water molecule at L-type defect sites of the H-bonded matrix. The lack of OH(*) reactivity toward the solute suggests that the H-bonded structure in HGW is much more effective in recombining OH(*) radicals than that of aqueous glasses obtained from highly concentrated electrolyte solutions. Furthermore, complementary experiments for the neat matrix have provided evidence that HO2(*) radicals are not the product of H atom reaction with molecular oxygen, possibly generated by ultrasounds used in the process of sample preparation.     

UV photodissociation dynamics of deprotonated 2'-deoxyadenosine 5'-monophosphate [5'-dAMP-H]-

The UV photodissociation dynamics of deprotonated 2'-deoxyadenosine 5'-monophosphate ([5'-dAMP-H](-)) has been studied using a unique technique based on the coincident detection of the ion and the neutral fragments. The observed fragment ions are m/z 79 (PO(3)(-)), 97 (H(2)PO(4)(-)), 134 ([A-H](-)), 177 ([dAMP-H-A-H(2)O](-)), and 195 ([dAMP-H-A](-)), where "A" refers to a neutral adenine molecule. The relative abundances are comparable to that found in previous studies on [5'-dAMP-H](-) employing different excitation processes, i.e., collisions and UV photons. The fragmentation times of the major channels have been measured, and are all found to be on the microsecond time scale. The fragmentation mechanisms for all channels have been characterized using velocity correlation plots of the ion and neutral fragment(s). The findings show that none of the dissociation channels of [5'-dAMP-H](-) is UV specific and all proceed via statistical fragmentation on the ground state after internal conversion, a result similar to fragmentations induced by collisions.     

Complexes of copper(II) with adenosine or guanosine nucleosides, nucleotides 5'-monophosphate, 2'-deoxynucleosides or 2'-deoxynucleotides 5'-monophosphate in aqueous solution

In this paper copper(II) complex formation in aqueous solution with a series of nucleosides (adenosine or guanosine) or nucleotides 5'-monophosphate is studied by means of potentiometry, visible spectrophotometry and ultraviolet circular dichroism. A chemical model has been formulated for each binary system (at T= 25 degrees C and I = 0.1 M), with particular attention to the interaction in the basic field. A spectrum (both visible absorption and ultraviolet circular dichroism) for each complex with a significant percentage of formation (in the adopted experimental conditions) has been calculated, allowing structural details to be hypothesised. The interaction with deprotonated alcoholic group(s) of the ribose moiety has been found to be fundamental in determining the co-ordination chemistry of each ligand considered while cases of co-operation between the purine and ribose donor(s) were also considered. Confirmations were also obtained by an investigation on the corresponding 2'-deoxy compounds as ligands.     

Photosensitization of neoplastic cells by anthrapyrazoles

Abstract— Three anthrapyrazoles were tested for their ability to photosensitize murine leukemia cells in culture. Photosensitization was correlated with singlet oxygen yield. A cell line which exhibits anthrapyrazole resistance was also photosensitized, but the resulting photodamage was substantially less than in the drug-sensitive cell line. This result has implications with regard to repair mechanisms in drug sensitive vs resistant cells.     

Photosensitization of TiO2 nanoparticulate thin film electrodes by CdS nanoparticles

Surface photovoltage spectra (SPS) measurements of TiO₂ show that a large surface state density is present on the TiO₂ nanoparticles and these surface states can be efficiently decreased by sensitization using CdS nanoparticles as well as by suitable heat treatment. The photoelectrochemical behavior of the bare TiO₂ thin film indicates that the mechanism of photoelectron transport is controlled by the trapping/detrapping properties of surface states within the thin films. The slow photocurrent response upon the illumination can be explained by the trap saturation effect. For a TiO₂ nanoparticulate thin film sensitized using CdS nanoparticles, the slow photocurrent response disappears and the steady-state photocurrent increases drastically, which suggests that photosensitization can decrease the effect of surface states on photocurrent response. Electronic Publication     

Selective adenosine-5'-monophosphate uptake by water-compatible molecularly imprinted polymer

Molecularly imprinted polymers (MIPs) were prepared for adenosine-5′-monophosphate (AMP), a substrate of AMP-activated protein kinase. The template molecule was formed by the vinylphenylboronate diester of adenosine on which 5′-free hydroxide was protected by tert-butyldimethylsilyl group in order to mimic the steric hindrance of the phosphate moiety of AMP. Molecular imprinting was performed by complexing acrylamide and the template in a highly cross-linked polymer. MIPs were tested in batch experiments with aqueous samples of nucleotides and a number of parameters were investigated. The use of tetrabutylammonium hydroxide (TBAH) was necessary to obtain a rebinding of nucleotides on MIP. The adsorption of AMP was optimal in 5 mM ammonium acetate buffer solution pH 9.5 for 30 min, with 30 mM of TBAH. The imprinted polymer was selective for AMP towards others nucleotides or deoxi analogues.     

Ciprofloxacin photosensitized oxidation of 2'-deoxyguanosine-5'-monophosphate in neutral aqueous solution

Laser flash photolysis studies have been carried out to investigate the reactions of ciprofloxacin (CPX) with 2'-deoxyguanosine-5'-monophosphate (dGMP), N, N, N', N'-tetramethyl-p-phenylenediamine (TMPD) and ferulic acid (FCA) in neutral aqueous solutions, respectively. CPX triplet state ((3)CPX*) can be quenched by TMPD, FCA and dGMP, with rate constants of 1.8 × 10(9), 1.5 × 10(9) and 5.8 × 10(7) dm(3) mol(-1) s(-1), respectively. TMPD radical cation (TMPD(·+)) and FCA radical cation (FCA(·+)) were observed directly. The formation rate of CPX radical anion (CPX(·-)) was determined to be 1.5 × 10(9) dm(3) mol(-1) s(-1). Redox reaction of dGMP was investigated through competing reactions using TMPD and FCA as probe. The triplet energy of CPX was determined to be 262 kJ mol(-1). Electron transfer from TMPD, FCA and dGMP to (3)CPX* was proposed.     

Simultaneous determination of 5'-monophosphate nucleotides in infant formulas by HPLC-MS

A method was developed for simultaneous determination of 5'-monophosphate nucleotides, adenosine 5'-monophosphate, cytidine 5'-monophosphate, guanosine 5'-monophosphate, inosine 5'-monophosphate, and uridine 5'-monophosphate in infant formulas by high-performance liquid chromatography-mass spectrometry equipped with electrospray ionization source. The complete chromatographic separation of five nucleotides was achieved through a Symmetry C(18) column, after a binary gradient elution with water containing 0.1% formic acid and acetonitrile as mobile phase. The multi-reaction monitoring mode was applied for tandem mass spectrometry analysis. The established method was further validated by determining the linearity (R(2) > 0.999), recovery (92.0-105.0%), and precision (relative standard deviation ≤6.97%). To verify the applicability of the method, thirty commercially available infant formulas were randomly purchased from the supermarkets in Hangzhou, China, and then analyzed. The results showed that the developed method is validated, sensitive, and reliable for quantitation of nucleotides in infant formulas.     

Photosensitization of nanocrystalline TiO2 by self-assembled layers of CdS quantum dots

CdS quantum dots can be self-assembled on high surface area nanocrystalline TiO2 electrodes; spectroscopic and photoelectrochemical studies indicate that the size, and hence the absorption edge, of the CdS particles can be controlled; efficient photosensitization of the TiO2 electrode by the Q-particles has been achieved.     

Self-organization of guanosine 5'-monophosphate on mica

Self-assembled aggregates of guanosine 5′-monophosphate (GMP) on the surface of muscovite mica were investigated by atomic force microscopy (AFM). Aqueous solutions of sodium, potassium and ammonium GMP salts were studied. For solution concentrations c < 0.005 wt% only small islands of deposited material are present on the surface. For c  0.02 wt%, in addition to the islands and patches, also linear aggregates called G-wires are formed. The wire-like aggregates are on average 1.9 nm high and can be several micrometers long. They exhibit a profound directional growth along the six main crystallographic axes of the basal plane of mica. For c > 0.1 wt% flat terraces with the height of 2.5 nm appear. They are formed of G-wires lying with their long axis parallel to the substrate and stacking in a hexagonal arrangement. The morphology of the adsorbates is independent of the type of salt used to prepare the initial solution. This signifies that intrinsic potassium ions from the substrate play much more important role in the GMP adsorption than cations from the solution.     

Photosensitization of nanostructured TiO2 with WS2 quantum sheets

Porous, nanostructured sol gel TiO2 (100 nm) has been sensitized with WS2 quantum sheets (approximately 5 nm) with the help of chemical bath deposition. The absorber has been characterized with help of energy dispersive X-ray (EDX), transmission electron microscopy (TEM), scanning electron microscopy (SEM), Raman spectroscopy, and light absorption measurements. The photosensitization was confirmed via electrochemical measurements. The surface of TiO2 has been modified by a thin Al2O3 film, which significantly enhanced the photocurrent density to 0.4-0.7 mA/cm2. Moiré patterns suggest that the S-W-S layers of WS2 are not perfectly aligned in the direction of the c-axis, emphasizing the role of lateral electron transfer, which is also evidenced by surface passivation experiments. With WS2, a new, cheap, environmentally friendly, and stable absorber material for the sensitization of wide band gap nanomaterials has been introduced.     

Photosensitization of vinyl polymerization by uranyl ions

Monomer acrylamide was used as quencher of uranyl ion fluorescence and Stern-Volmer plots were constructed at three monochromatic wavelengths of exciting radiation. The results indicated that the reaction between excited uranyl ion and monomer is one of energy transfer. The rate parameters k_p/k_p^½ and k_d′/k_i were calculated from the polymerization kinetics at high monomer concentrations. A general mechanism for the photopolymerization of vinyl monomers sensitized by uranyl ions is proposed and discussed.