The crystal structure of a cyclodecabis[1,2,3]selenadiazole

4,5,6,10,11,12-hexahydrocyclodeca[1,2-d6,7-d]bis[1,2,3]selenadiazole, C₁₀H₁₂N₄Se₂, crystallizes in triclinic space group P witha=5.4625(3),b=7.2091(4),c=8.3122(6) , =65.313(5), =77.476(5), =77.442(5)°,V=287.35(4) ³,Z=1. The structure was refined toR=0.031 andR _w=0.030 for 2018 observed reflections. The molecule lies on an inversion center. The cyclodecadiene ring adopts an elongated chair conformation. The near-zero torsion angle of the elongated chair lies at the ring-fusion bonds, with a magnitude of 2.9(3)°. The five atoms of the selenadiazole ring exhibit maximum deviation 0.005(2) from planarity, with the adjacent carbon atoms lying respectively 0.020(2) and 0.059(2) to the same side of this plane. The torsion angles about the bonds comprising the sides of the elongated chair vary in magnitude from 61.0(2)° to 55.7(2)°. The cyclodecadiene C=C bond lengths are 1.368(2) . The selenium-carbon bond length is 1.850(2) . The Se–N distance is quite long, 1.888(2) .     

Crystal and molecular structure of: 5-(1-oxoethyl)-1-methyl-2-(5-bromo-6-methoxy-2-naphthyl)-6-oxabicyclo[3.2.1]octan-7-one and 5-(1-oxoethyl)-1-methyl-2-(5-bromo-6-methoxy-2-naphthyl)-6-oxabicyclo[3.2.1]octane

X-ray crystallographic studies of the two title compounds have shown that the molecules crystallize in the same triclinic space group, , with very similar cell dimensions. For C₂₁H₂₁BrO₄,a=12.056(5),b=13.206(5),c=7.595(3)Å, =90.38(3), =106.07(3) and =124.42(3)° and for C₂₁H₂₃BrO₃,a=12.076(6),b=13.090(5),c=7.490(3)Å, =92.65(5), =104.90(5) and =124.55(5)°. Both compounds possess the oxabicyclo[3.2.1]octane bridged ring system and differ only at the carbon to the ring oxygen where the Csp³ in the ether is replaced by Csp²=O in the lactone. Both cyclohexane rings adopt distorted chair conformations and the lactone and ether rings approximate closely to the envelope conformation. The bromine substituent at C(4) results in distortion of the naphthalene ring. Both molecules pack with the naphthalene rings parallel to each other with interplanar spacings of 3.71 Å in the ether and 3.66Å in the lactone.     

Molecular structure of N-(2-phenylethyl)amide of α-(1,1-ethylenedioxy)-ethyl γ-hydroxybutyric acid (I) and1H NMR spectra of (I) and N-(p-methoxybenzyl)derivative (III)

The spectroscopic and X-ray investigation of the N-(2-phenylethyl) amide of -(1,1-ethylenedioxy)-ethyl--hydroxybutyric acid are reported. The¹H NMR spectra for the title structure and for the N-(p-methoxybenzyl) amide of -(1,1-ethylenedioxy)-ethyl--hydroxybutyric acid are given. The N-(2-phenylethyl)amide of -(1,1-ethylenedioxy)-ethyl--hydroxybutyric acid, C₁₆H₂₃O₄N, crustallizes in the monoclinic space groupP2 ₁/c witha=21.547(5),b=6.333(2),c=11.822(3) Å and =101.01(2)°. The dioxolane ring has a half-chair conformation with C₂(O3)=2.4° and ||_av=18.2°. The inconsiderable deviations from planarity of the six atoms of the amide group are caused mainly by twist around the C4–N1 bond and out-of-plane bending at the N1 atom ((C4–N1)=4°, X_N =7°, X_c =0.4° ). The amide group plane is nearly coplanar with the phenyl ring. The molecules are connected by two intermolecular hydrogen bonds.     

C-H⋯π(Ar)⋯Cl-C,C-Cl⋯π(Ar), Cl⋯Cl and other interactions in the crystal structure of 6-benzoyl-2,4-bis(trichloromethyl)-1,3-benzdioxin

The title compound is monoclinic,P2₁/n,Z=4,a=9.934(1),b=18.399(2),c=11.098(2)Å, =111.08(1)°. The molecule can conveniently be visualized as a benzophenone molecule with one of the aromatic rings fused to a 1,3-dioxin ring which adopts a distorted envelope conformation withcis-trichloromethyl groups substituted at positions 2 and 4. An interaction, observed for the first time, involves a hydrogen atom and a chlorine atom from opposite sides of the same aromatic ring to give C-H-(Ar)Cl-C. The parameters are Hring-centroid 2.63 A, Clring centroid 3.41 Å, Hring-centroidCl 167°, C-Hring centroid 159°, C-Clring centroid 150.2°. The (Ar) system is that of the unfused aromatic ring. A second (Ar) Cl-C interaction occurs but this time with the (Ar) system of the fused aromatic ring. The ClCl and ClO(=C) interactions form the familiar zig-zag pattern which has been noted for many chloroaromatic compounds.     

Structure of 2,2′-anhydro-3′-O-acetyl-2′thio-1-β-D-arabinofuranosylcytosine hydrochloride1

2,2-Anhydro-3-O-acetyl-2-thio-1--D-arabinofuranosylcytosine hydrochloride crystallizes in space group P2₁2₁2₁ witha=10.373(1),b=14.517(2),c=9.496(1) Å. Reflections were measured on a diffractometer and the structure was solved by direct methods. Least-squares refinement converged atR=0.056 andR _w =0.063. The study of this crystal structure showed that the alterations in the geometry of 2,2-anhydro-1--D-arabinofuranosylcytosine when the bridge oxygen is replaced by sulfur are localized in the region of the fused ring. The angle at the bridge atom decreases to nearly 90°, with concomitant enlargements of about 5°–7° in the angles opposite to the bridge atom. Angle C(1)-N(1)-C(6) decreases by 4°. Also, the amount of double bond character in the bond formed by C(2) and the bridge atom decreases. A survey of the conformational features of S,2-cyclonucleosides and comparison with O,2-cyclonucleosidcs showed that their preferred conformations are the same. However, S,2-cyclonucleosides exhibit a wider range of P and values. This correlates with a greater ease of the sulfur containing five-membered ring to pucker as compared to the oxygen-cyclo ring.This paper is part of the authors' dissertation (Vitali, 1986).     

Reaction of trimethylaluminum and trimethylgallium with bifunctional amines: Syntheses and molecular structures of [Me2Al−N(CH2CH2)2−C−(OCH2)2]2 and [Me2Ga−N(Si(H)Me2)2]2

The crystalline products [Me₂Al–N(CH₂CH₂)₂–C–(OCH₂)₂]₂ (I) and [Me₂Ga–N(Si(H)Me₂)₂]₂ (II) were prepared from reactions of trimethylaluminum and trimethylgallium with 1,4-dioxa-8-azaspiro[4.5]-decane and 1,1,3,3-tetramethyldisilazane, respectively, in toluene. The organoaluminum dimer crystallizes in the monoclinic space groupP2₁/c with unit cell parametersa=8.970(2) ,b=9.683(2) ,c=12.833(3) , =103.18(2)°,V=1085.3(3) ³, andD _calcd=1.22 g cm^–3 forZ=2. Least-squares refinement based on 935 observed reflectionsI>3(I) in the range 3.5°<2<45.0° led to a finalR factor of 0.033 (R _w =0.041). The dimeric organosilazagallium crystallizes in the triclinic space group with unit cell parametersa=7.636(2) ,b=9.168(2) ,c=9.466(3), =72.81(2)°, =87.94(2)°, =69.90(2)°,V=593.0(3) ³, andD _calcd=1.30 g cm^–3 forZ=1. Least-squares refinement based on 1661 observed reflectionsI>3(I) in the range 3.5°<2<48.0° led to a finalR factor of 0.055 (R _w =0.070). Both compoundsI andII reside about a crystallographic center of symmetry and contain a planar M₂N₂ (M=Al forI, Ga forII) four-membered ring withI having an Al...Al contact of 2.801 .     

The crystal and molecular structure of 6,8,15,16b,16c,17-hexahydro-16b,16c-diphenyl-7H,16H-6a,7a,15a,16a-tetraazanaphtho[5,6]azulano[2,1,8-ij]naptho[f]azulene-7,16-dione

The crystal and molecular structure of a clip containing molecule is described. The structure was solved by vector search methods and refined by least squares methods toR _l=0.0768 [I>2(I)]. Crystal data: C₄₀H₃₀N₄O₂·HCCl₃, triclinic, space group ,a=9.302(2),b=12.981(2),c=15.765(2)Å, =65.91(2)°, =76.40(2)°, =80.15(1)°,V=1682.9(4)ų, Z=2.     

Structural characterization of oxidized lumiflavin hydrochloride hydrate: Comparison with the hydrogen bonding at the cofactor of flavoproteins

In order to examine the possibility of hydrogen bonding around the flavin ring, an X-ray diffraction study of the title compound was undertaken. Crystals of lumiflavin hydrochloride hydrate [2(C₁₃H₁₂N₄O₂) 4 HCl 7 H₂O] are triclinic, space group ,Z=2,a=11.064(1),b=17.903(1),c=9.891(1)Å, =111.9(6), -96.4(8), =91.6(7)°. We present the crystal structure of this compound and compare it with other flavin derivatives and with the structure of the active site of some flavoproteins.     

Crystal structure of a nucleoside analog: 2′,3′-dideoxy-3′-fluoro-5-bromocytidine

The title compound crystallizes in the orthorhombic space groupP2₁2₁2₁ witha=5.084(1),b=14.322(3),c=16.065(2)Å,Z=4. The structure was solved by the heavy atom method and refined by full-matrix least-squares calculations to a finalR value of 0.033 for 1106 unique observed reflections. The N-glycosidic torsion anglex has a value of –153.7(4)°, in the anti-range. The sugar pucker is²T₃ withP=175(1)° and=30(1)°. The C4-C5 conformation is + sc with =46.7(7)°. The structure is stabilized by N-HN, N-HO and O-HO hydrogen bonds and C-HO close contacts.     

Structure of 593-1593-1593-1hexafluorophosphate, [Co(C5H4COOMe)2](PF6)

Crystals of [Co(C₅H₄COOMe)₂](PF₆) are triclinic, spacegroup witha=6.854(3),b=7.367(4),c=9.430(4) Å, =69.12(3), =86.56(4), =67.20(4)°,Z=1. The cation and anion both lie on crystal inversion centers. The Co–C bond lengths are in the range 2.030–2.041(3) Å. The COOMe groups are twisted 5.4° from the cyclopentadienyl ring planes. Refinement with 1574 data [I>3(I)] converged atR 0.041.     

Crystal structure of a nucleoside analogue, 2′,3′-dideoxy-3′-fluoro-5-chlorocytidine

The title compound, 1-(2,3-dideoxy-3-fluoro--d-erythro pentofuranos-1-yl)-5-chlorocytosine, crystallises in the orthorhombic space groupP2₁2₁2₁ witha=5.142(1),b=14.177(2),c=15.721(2) Å,Z=4. The crystal structure was solved by the heavy atom method and refined by full-matrix least-squares method to a finalR value of 0.031 for 1629 unique observed reflections. The N-glycosidic torsion angle is –156.1(2)° and the sugar moiety is anti to the cytosine base. The sugar pucker is ₂ ³ T withP=178.2(1)° and=31(1)°. The atom 05 is in a +sc conformation with respect to the furanose ring. The molecular packing in the crystal is stabilized by N-HN, N-HO, O-HO hydrogen bonds and C-HO close contacts.     

Crystal structure of 8-(3,4-dimethylphenoxy)-16H dinaphtho[2,1-d:1′,2′-g] dioxaphosphocin 8-oxide

The title compound, C₂₉H₂₃O₄P crystallizes in the triclinic space group witha=9.636(1),b=10.327(1),c=13.406(1) Å, =102.22(1), =100.59(1), =109.84(1)^o.V=1178.1(2) ų,Z=2,D _cal=1.32 M gm^–3, (CuK)=6.16 cm^–1, (CuK)=1.5418 Å andT=295K. The structure was solved by direct methods and refined by full-matrix least-squares method to a finalR=0.052 andwR=0.063 for 2708 reflections withl3(l). The napthalene ring A lies perpendicular to the best plane of the phenyl ring [91.6(1)^o] and the ring B orients at an angle of 55.7(1)^o with this plane and is inclined at an angle of 77.8(1)^o with ring A. The heterocyclic phosphorous eight-membered ring assumes a distorted boat conformation.DCB Contribution No. 822.     

Crystal structure of a nucleoside analog, 2′,3′-dideoxy-3′-azido-5-chlorocytidine

The title compound, l-(2,3-dideoxy-3-azido--D-erythro pentofuranos-1-yl)-5-chlorocytosine, crystallizes in the orthorhombic space groupP2₁2₁2₁ witha=5.840(1),b=13.780(1),c=15.396(2)Å,Z=4. The structure was solved by direct methods and refined by full-matrix least-squares calculations to a finalR value of 0.033 for 1688 unique observed reflections. The N-glycosidic torsion angle has a value of –160.8(1)°, in the and range. The sugar pucker is ₂ ³ T withP=180(1)° and=34(1)°. The C4–C5 conformation is +sc with =50.8(2)°. The azido group is nonlinear and oriented trans to the C3–C4 bond. The molecular packing in the crystalline space is stabilized by N-HN, N-HO, O-HO hydrogen bonds and C-HO close contacts.     

Structure and spectral properties of (O-Cyclohexyldithiocarbonatio-S,S′) bis(triphesnylphosphine) copper(I) complex

The complex [(C₆H₁₁OCS₂)(PPh₃)₂Cu], was synthesized and characterized using IR, UV, and ¹H NMR. The crystal and molecular structure has been determined by X-ray diffraction. The yellow crystal of the complex is triclinic of space group , with parameters a=10.370(2)Å, b=13.530(3)Å, c=14.640(3)Å, =92.60(3)°, =108.00(3)°, =97.70(3)°, and Z=2. In the complex, the central Cu atom is in a distorted tetrahedral environment and chelated by two phosphorus atoms of the TRIPHOS and two sulfur atoms from the O-cyclohexyldithiocarbonate. The cyclohexane ring adopts a chair conformation. The thermal analytical data indicate that the complex begins to decompose at 101°C and stop at 360°C , leaving CuS. IR, UV, and NMR results supported the crystal structure.     

Structure of (Z)-1-p-methoxyphenyltelluro-1,4-diphenyl but-1-en-3-yne

C₂₃H₁₈TeO,M _r=437.97, ,a=9.940(2),b=13.664(3),c=7.895(2) Å, =80.60(1), =69.71(2), =75.95(1)°,V=972.0(4) ų,Z=2,R=0.041 for 2668 observed reflections. The Te–C bond distances are 2.109(5)Å and the C–Te–C angle is 96.0(2)°. The phenyl rings are planar to within experimental accuracy, making dihedral angles of 64.6(2), 65.3(2) and 31.1(3)°.     

Structures of Z-(nitrostilbene)chromium tricarbonyl complexes: The effect of metal coordination on the nonplanarity of the stilbene system

The structures of the nitrostilbene complexes Z-(4-R–C₆H₄–CH=CH–C₆H₄-4-NO₂)Cr(CO)₃ (R=Me₂N,1; H,2; F₃C,3), are reported. The copounds were prepared as part of a study of the synthesis of organometallic complexes with potential nonlinear optics applications. For Z-(4-Me₂N–C₆H₄–CH=CH–C₆H₄-4-NO₂)Cr(CO)₃,1, triclinic, ,a=7.214 (3) Å,b=7.340 (3) Å,c=17.238 (9)Å, =88.23 (5)°, =88.76 (4)°, =87.66 (3) °,Z=2. For Z-(C₆H₅–CH=CH–C₆H₄-4-NO₂)Cr(CO)₃,2, monoclinic, P2₁/C,a=12.255 (3) Å,b=9.415 (1) Å,c=13.579 (4) Å, =105.60 (2)°,Z=4. For Z-(4-F₃C–C₆H₄–CH=CH–C₆H₄-4-NO₂)Cr(CO)₃,3, triclinic, ,a=7.094 (2) Å,b=8.057 (5) Å,c=17.295 (9) Å, =87.95 (5)° =85.94 (4)°, =64.24 (5)°,Z=2. The structural data show that the Z isomers exhibit bond lengths and angles similar to those observed in the E isomers, but the stilbene fragment is considerably more nonplanar. As a consequence, these molecules are unlikely to behave as NLO materials.     

Investigation of lignin models of the biphenyl type by X-ray crystallography and NMR spectroscopy

Lignin models of the biphenyl type have been synthesized and crystal structures of two of them have been determined. The tetraacetate of 5,5-bis(hydroxymethyl)-3,3-dimethoxy-2,2-biphenyldiol crystallizes in space group witha=11.319(2),b=12.232(6),c=9.242(3) Å, =101.66(3)°, =108.14(2)°, =79.08(2)° andZ=2.R=0.036 (2720 observed [I>3(I)] reflections). The acetate of 5,5-di-tert-butyl-2,3,3-trimethoxy-2-biphenylol crystallizes in space group witha=11.972(2),b=21.621(3),c=9.834(1) Å, =91.18(1)°, =113.13(1)°. =98.42(1)°, andZ=4.R=0.050 (8129 observed [I>3(I)] reflections).¹H NMR and¹³C NMR data for the above-mentioned compounds and a third model, the diacetate of 5,5-bis(1-hydroxyethyl)-2,2,3,3-tetramethoxybiphenyl, are reported. Observed signal positions are compared with those calculated on the basis of crystal structure data. The possibilities to obtain structural information about biphenyl structures in lignins from NMR spectra are discussed.     

Structure of two 1,3-dioxane derivatives from 4′, 5′-dimethylfurocoumarins: 4a, 11a-dihydro-4a, 11a-dimethyl-8H-pyrano[3′,2′∶5,6]benzofuro[3,2-e]-1, 3-dioxan-8-one and 7a,11a-dihydro-7a,11a-dimethyl-2H-pyrano[2′, 3′∶4,5]benzofuro[3,2-d] (1,3) dioxan-2-one

Treatment of dimethylated psoralen and angelicin in the 4, 5-position leads to the formation of 1,3-dioxane derivatives, resulting from the condensation of an 1,3-dioxane ring to the 4, 5-positions of the dihydrofurocoumarin moiety. The structures of these new compounds, 4a, 1 1a-dihydro-4a, 11a-dimethyl-8H-pyrano [3, 25,6]benzofuro[3,2-e]-1, 3-dioxan-8-one (C₁₅H₁₄O₅) (1) and 7a, 11a-dihydro-7a, 11a-dimethyl-2H-pyrano[2, 34, 5]benzofuro[3, 2-d](1, 3)dioxan-2-one (C₁₅H₁₄O₅) (2) have been assigned by¹H and¹³C NMR measurements, mass spectrometry results, and X-ray analysis. Compound (1): triclinic,P¯1,a=9.847(2),b=8.927(2),c=8.334(2) Å,=95.98(2),=108.81(3), =106.73(3)°; compound (2): triclinic,P¯1,a=7.296(4),b=7.481(2),c=11.812(4) Å,=91.67(2),=95.97(4), =94.20(3)°. The structures were solved by direct methods and refined by full-matrix least squares toR=0.050 (1) and 0.056 (2). In both compounds the coumarin rings can be regarded as coplanar, while the five-membered ring adopts an envelope conformation and the 1,3-dioxane ring a chair conformation.     

Structure of 3α,12β-dihydroxy-2β-morpholino-5α-pregnan-20-one,C25H41O4N

The crystal and molecular structure of 3,12-dihydroxy-2-morpholino-5-pregnan-20-one, C₂₅H₄₁O₄N, has been determined:M _r =419.6,P2₁,a=13.5778(8),b=14.4340(8),c=5.8943(5) Å,=94.32(1)°,V _c =1151.9(3) ų,Z=2,D _x =1.21 g cm^–3, (CuK) = 1.5418 Å, =5.6 cm^–1,F(000)=460,R=0.039,R _w =0.040 for 2421 unique observed reflections. All six-membered rings have chair conformations, and theD ring has a 13-envelope conformation. The progesterone side chain has an unusual conformation, and the C16-C17-C20-O20 torsion angle, which defines the conformation, is –152.6(3)°. The unusual conformation seems to be forced by the intramolecular hydrogen bond between the hydroxyl group at C12 and the O20 atom from the side-chain.     

Crystal structure of 5-fluoro-1-(2,3,6-trideoxy-α-l-glycero-hex-2-enopyranos-4-ulosyl)uracil

The present compound crystallizes in the space groupP2₁2₁2₁ withZ=4 and cell parametersa=21.687(2),b=8.155(3),c=5.883(2)Å. The structure was solved by direct methods and refined by full-matrix least-squares to a finalR value of 0.045 for 1153 observed reflections. The N-glycosidic torsion angle _CN is in the anti-range and the pyranosyl ring adopts a distorted half-chair conformation with ₂=142.7(4)°, ₂=124.4(3)° andQ=0.456(2)Å. In the crystal packing the molecules are linked together by N-HO hydrogen bonds and C-HO contacts.