The Influence of Adnectin Binding on the Extracellular Domain of Epidermal Growth Factor Receptor

The precise and unambiguous elucidation and characterization of interactions between a high affinity recognition entity and its cognate protein provides important insights for the design and development of drugs with optimized properties and efficacy. In oncology, one important target protein has been shown to be the epidermal growth factor receptor (EGFR) through the development of therapeutic anticancer antibodies that are selective inhibitors of EGFR activity. More recently, smaller protein derived from the 10th type III domain of human fibronectin termed an adnectin has also been shown to inhibit EGFR in clinical studies. The mechanism of EGFR inhibition by either an adnectin or an antibody results from specific binding of the high affinity protein to the extracellular portion of EGFR (exEGFR) in a manner that prevents phosphorylation of the intracellular kinase domain of the receptor and thereby blocks intracellular signaling. Here, the structural changes induced upon binding were studied by probing the solution conformations of full length exEGFR alone and bound to a cognate adnectin through hydrogen/deuterium exchange mass spectrometry (HDX MS). The effects of binding in solution were identified and compared with the structure of a bound complex determined by X-ray crystallography. ?      

SDS 800 — The new data system for quantitative depth profiling of inhomogeneous samples by SIMS

More than 13 years of SIMS application field experience of numerous users of the ATOMIKA Ionmicroprobes have been the basis for the new SIMS Data System SDS 800. The hardware and software concept of the SDS 800, therefore, pays special attention to the following requirements:

1. Convenient set-up, modification and re-use of the measuring parameter sets for easy, time-saving operation.
2. Individual parameter selection from the very broad range of SIMS measuring parameters for optimum SIMS data quality.
3. Multitasking operation for simultaneous handling of SIMS measurement, data processing, data output and of auxiliary techniques.
4. Simultaneous depth profile/ion image acquisition and processing to enhance data quality and to validate data interpretation.
5. User-friendly data processing and output.

     

Fluorescent protein-based FRET sensor for intracellular monitoring of redox status in bacteria at single cell level

Monitoring of intracellular redox status in a bacterial cell provides vital information about the physiological status of the cell, which can be exploited in several applications such as metabolic engineering and computational modeling. Fluorescent protein-based genetically encoded sensors can be used to monitor intracellular oxidation/reduction status. This study reports the development of a redox sensor for intracellular measurements using fluorescent protein pairs and the phenomenon of Förster resonance energy transfer (FRET). For the development of the sensor, fluorescent proteins Citrine and Cerulean were genetically modified to carry reactive cysteine residues on the protein surface close to the chromophore and a constructed FRET pair was fused using a biotinylation domain as a linker. In oxidized state, the FRET pairs are in close proximity by labile disulfide bond formation resulting in higher FRET efficiency. In reducing environment, the FRET is diminished due to the increased distance between FRET pairs providing large dynamic measurement range to the sensor. Intracellular studies in Escherichia coli mutants revealed the capability of the sensor in detecting real-time redox variations at single cell level. The results were validated by intensity based and time resolved measurements. The functional immobilization of the fluorescent protein-based FRET sensor at solid surfaces for in vitro applications was also demonstrated. Graphical Abstract

Schematic representation of FRET-based redox sensor     

Heat of reaction and curing of epoxy resin

The heat of reaction and kinetics of curing of diglycidyl ether of bisphenol-A (DGEBA) type of epoxy resin with catalytic amounts of ethylmethylimidazole (EMI) have been studied by differential power-compensated calorimetry as a part of the program for the study of process monitoring for composite materials. The results were compared with those from 1∶1 and 1∶2 molar mixtures of DGEBA and EMI. A method of determination of heat of reaction from dynamic thermoanalytical instruments was given according to basic thermodynamic principles. The complicated mechanism, possibly involving initial ionic formation, has also been observed in other measurements, such as by time-domain dielectric spectroscopy. The behavior of commercially available DGEBA resin versus purified monomeric DGEBA were compared. The melting point of purified monomeric DGEBA crystals is 41.4 °C with a heat of fusion of 81 J/g. The melt of DGEBA is difficult to crystallize upon cooling. The glass transition of purified DGEBA monomer occurs around ?22 °C with aΔC _p of 0.60 J/K/g.     

Structural and thermal properties of HDPE/n-AlN polymer nanocomposites

High-density polyethylene (HDPE) containing various volume fractions (0–20 vol%) of aluminum nitride nanoparticles (n-AlN) is prepared by melt mixing. Structural and morphological characterizations of the prepared composites are carried out by X-ray diffraction (XRD), high-resolution transmission electron microscopy (HR-TEM), and atomic force microscopy (AFM). Thermal stability and degradation kinetics of HDPE/AlN (nano) composites are investigated by Thermogravimetric analysis (TG). HR-TEM micrographs confirm fairly uniform dispersion of AlN nanoparticles, as well as the existence of long interconnected chain-like aggregates. AFM images also confirm homogeneous dispersion of n-AlN in the polymer matrix. Roughness analysis from the AFM data indicates the presence of substantial undulation from the mean surface level. Thermogravimetric data indicate small improvement in the thermal stability of the composites. Kinetic parameters, viz., the activation energy (E _a), frequency factor (A), and reaction order (n) are estimated using the isoconversional methods of Kissinger, Flynn–Wall–Ozawa (FWO), KAS, and Friedman. Activation energies (E _a) calculated by the above four models display nearly similar features and are enhanced by the presence of AlN nanoparticles. Kinetics of degradation of HDPE-AlN (nano) composites follows a first-order reaction.     

Solid-phase microextraction/gas chromatography–mass spectrometry method optimization for characterization of surface adsorption forces of nanoparticles

A complete characterization of the different physico-chemical properties of nanoparticles (NPs) is necessary for the evaluation of their impact on health and environment. Among these properties, the surface characterization of the nanomaterial is the least developed and in many cases limited to the measurement of surface composition and zetapotential. The biological surface adsorption index approach (BSAI) for characterization of surface adsorption properties of NPs has recently been introduced (Xia et al. Nat Nanotechnol 5:671–675, 2010; Xia et al. ACS Nano 5(11):9074–9081, 2011). The BSAI approach offers in principle the possibility to characterize the different interaction forces exerted between a NP's surface and an organic—and by extension biological—entity. The present work further develops the BSAI approach and optimizes a solid-phase microextraction gas chromatography–mass spectrometry (SPME/GC-MS) method which, as an outcome, gives a better-defined quantification of the adsorption properties on NPs. We investigated the various aspects of the SPME/GC-MS method, including kinetics of adsorption of probe compounds on SPME fiber, kinetic of adsorption of probe compounds on NP's surface, and optimization of NP's concentration. The optimized conditions were then tested on 33 probe compounds and on Au NPs (15 nm) and SiO₂ NPs (50 nm). The procedure allowed the identification of three compounds adsorbed by silica NPs and nine compounds by Au NPs, with equilibrium times which varied between 30 min and 12 h. Adsorption coefficients of 4.66?±?0.23 and 4.44?±?0.26 were calculated for 1-methylnaphtalene and biphenyl, compared to literature values of 4.89 and 5.18, respectively. The results demonstrated that the detailed optimization of the SPME/GC-MS method under various conditions is a critical factor and a prerequisite to the application of the BSAI approach as a tool to characterize surface adsorption properties of NPs and therefore to draw any further conclusions on their potential impact on health. Graphical Abstract

The basic principle of SPME/GC-MS method for characterization of nanoparticles surface adsorption forces     

On synthesis of Fe2SiO4/SiO2 and Fe2O3/SiO2 composites through sol–gel and solid-state reactions

Major processing factors in forming Fe₂SiO₄/SiO₂ and Fe₂O₃/SiO₂ powders via sol–gel synthesis followed by solid-state reactions are investigated. The results clearly indicate that the chemical compositions of the precursors, the ratio of the precursors, the nature of the catalyst used, and the gas atmosphere during solid-state reactions can all affect the outcome of the reaction product(s). The formation of Fe₂SiO₄/SiO₂ is enhanced by using the precursor iron(III) acetylacetonate as the Fe source with the precursor ratio of iron(III) acetylacetonate to tetraethyl orthosilicate being 1:1 and the addition of formic acid. Otherwise, crystalline Fe and Fe₃C are formed in place of Fe₂SiO₄. By altering the gas atmosphere during solid-state reactions from argon to oxygen, the reaction products change from Fe₂SiO₄/SiO₂ to Fe₂O₃/SiO₂. All of the observed phenomena can be rationalized via the degree of mixing of the Fe–O and Si–O domains at the molecular level in the gel network during sol–gel reactions and the presence of a reducing or oxidizing atmosphere during the solid-state reaction.     

Preparation of Cu (II)/PEI–QPEI/SiO2 nanopowder as antibacterial material

The silica nanoparticles were prepared by the sol–gel process, and then twice modified and grafted by polyethylenimine (PEI) on their surface. After quaternary ammonium reaction and chelated copper reaction, the PEI/SiO₂, QPEI/SiO₂, PEI–QPEI/SiO₂ and Cu (II)/PEI–QPEI/SiO₂ nanopowders were obtained in turn. The morphology and structure of the products were characterized through SEM, EDX, HRTEM, FTIR and element analysis. At the same time, the antibacterial activity of the products to E. coli and Candida were evaluated through quantification and qualitative ways, e.g. microcalorimetric method and culture dish method. The results suggested that the Cu (II)/PEI–QPEI/SiO₂, a novel three-component functional nanopowder, presented the best antibacterial activity to both E. coli and Candida duo to the synergistic sterilization capability of the ammonium salt and copper ions, compared with other products. It indicated that the Cu (II)/PEI–QPEI/SiO₂ nanopowder could be a novel antibacterial nanomaterial to widely application in preventing and minimizing bacteria of the organism and environment in future.     

The role of octanol in the extraction of hydrochloric acid by trilaurylamine dissolved in benzene

The extraction of hydrochloric acid by trilaurylamine (TLA) dissolved in benzene was studied in the presence and in absence of n-octanol. The extraction of HCl was found to be enhanced by the addition of octanoi to the organic phase. In order to explain this effect by means of the law of mass action, the systems TLA-HCL-benzene and n-octanol-HCl-benzene as well as TLA-octanol-benzene were also studied. It was found that TLA reacts with octanol to form a complex, TLAROH, while the octanol itself associates in benzene to form dimers and tetramers, although it does not extract HCl alone from the dilute solutions used in the present study. The enhancement of the extraction of HCl by TLA upon the addition of n-octanol could be described by the formation of the species TLA·ROH·HCl and its stability constant was determined.     

Acetonitrile Adduct Formation as a Sensitive Means for Simple Alcohol Detection by LC-MS

Simple alcohols formed protonated acetonitrile adducts containing up to two acetonitrile molecules when analyzed by ESI or APCI in the presence of acetonitrile in the solvent. These acetonitrile adducts underwent dissociation to form a nitrilium ion, also referred to as the substitution ion. Diols and triols behaved differently. In ESI, they formed only one acetonitrile adduct containing one acetonitrile. The S ion was not observed in ESI and was only weakly observed from the dissociation of the (M?+?ACN?+?H)⁺ ion. On the other hand, the S ion was abundantly formed from the diols in APCI. This formation of acetonitrile adducts and substitution ion from simple alcohols/diols offers an opportunity to detect simple alcohols/diols sensitively by LC-MS interfaced by ESI or APCI. The utility of this chemistry was demonstrated in a method developed for the quantification of cyclohexanol in rat plasma by monitoring the CID-induced fragmentation from the S ion to a fragment ion. Graphical Abstract

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An enzyme immunosensor for IgG

An enzyme immunosensor has been developed for assaying human immunoglobulin G (IgG). The sensor is composed of an oxygen sensoring system and an antibody-binding membrane. The assay procedure involves the competitive immunochemical reaction of the membrane-bound antibody with nonlabeled and catalase-labeled IgG and the electrochemical determination of membrane-bound catalase activity. The analytical result is directly displayed by the output current of the sensor. The sensor exhibited an excellent performance in monitoring specifically human IgG.     

Isolation and properties of transferrin messenger RNA from rat liver

Highly purified transferrin mRNA characterized by electrophoretic and sedimentational homogeneity has been obtained from rat liver, with a sedimentation coefficient of 20S and a molecular weight of 0.86 MD. In a system consisting of a lysate of rabbit reticulocytes the Tf-mRNA programs the synthesis of an immunoreactive precursor of transferrin with a molecular weight of 82 kD. More than 50% of the nucleotide sequence of Tf-mRNA is present in the paired state.     

Analysis of citrate-capped gold and silver nanoparticles by thiol ligand exchange capillary electrophoresis

We report on the capillary electrophoretic behavior of citrate-capped gold and silver nanoparticles in aqueous medium when applying a ligand-exchange surface reaction with thiols. Gold nanoparticles (AuNPs) and silver nanoparticles (AgNPs) of similar size (39?±?6 and 41?±?7 nm, respectively) and shape were synthesized, covered with a citrate shell, and characterized by microscopic and spectroscopic techniques. The analysis of these NPs by CE was accomplished by using a buffer solution (pH 9.7; 40 mM SDS, 10 mM CAPS; 0.1 % methanol) containing the anions of thioctic acid or thiomalic acid. These are capable of differently interacting with the surface of the AuNPs and AgNPs and thus introducing additional negative charges. This results in different migration times due to the formation of differently charged nanoparticles. Figure

Capillary electrophoretic behavior of citrate-capped gold and silver nanoparticles (NPs) in aqueous medium when applying a ligand-exchange surface reaction with thiols (thioctic and thiomalic acids), which introduces additional negative charges, has been studied     

Two-dimensional analysis of the SAXS of partially oriented polymers*)

The Small-angle X-ray scattering (SAXS) patterns of oriented LDPE (λ=1...5.7) were fitted by calculating the small-angle intensity for a structure consisting of a linear paracrystalline lattice built up by finite lamellar or cylindrical crystallites. The resulting data of the superstructure were compared with corresponding values from wideangle X-ray scattering. It is shown that it is impossible to get quantitative information about the superstructure of oriented polymers by using SAXS alone. Nevertheless, the qualitative transition of the crystals during orientation can be explained very well.     

Sephadex-bound histamine in the catalysis of ester hydrolysis

Ester hydrolysis by Sephadex-bound catalysts was studied in a flow-through system. Three different immobilized preparations were synthesized and used: histamine-, coimmobilized histamine-octylamine-, and octylamine-Sephadex; octylamine-Sephadex was used as a reference. Immobilization was carried out using water-soluble carbodiimide, which gave amide linkages between carboxymethyl Sephadex and the groups attached. It was found that the coimmobilized histamine-octylamine preparation was three times more efficient than immobilized histamine alone in the hydrolysis of the esterp-nitrophenylcaproate, whereas hardly any difference was found in the hydrolysis of the less hydrophobic substratep-nitrophenylacetate. We attribute this enhancement of the hydrolysis ofp-nitrophenylcaproate to local enrichment of the substrate on the histamine-octylamine matrix caused by the presence of hydrophobic octyl groups.     

Facile formation of stimuli-responsive,fluorescent and magnetic nanoparticles based on cellulose stearoyl ester via nanoprecipitation

In comparison to stimuli-responsive, multi-functional nanoparticles (NPs) from synthetic polymers, such NPs based on sustainable, naturally occurring polysaccharides are still scarce. In the present study, stable stimuli-responsive, fluorescent and magnetic NPs were fabricated using cellulose stearoyl esters (CSEs) consisting of cellulose and stearoyl groups. The multifunctional NPs with the average diameters between 80 and 250 nm were obtained after facile nanoprecipitation using CSE solutions containing Fe₃O₄-NPs. Using the aqueous solution of fluorescent rhodamine B as precipitant, NPs with rhodamine B on NP surface were obtained. Rhodamine B could be released depending on the temperature. In comparison, stearoylaminoethyl rhodamine B can be encapsulated in CSE-NPs, which renders obtained NPs reversible fluorescence in response to UV illumination and heat treatment.     

Polyoxotungstate nanoclusters supported on silica as an efficient solid-phase microextraction fiber of polycyclic aromatic hydrocarbons

A highly porous silica-supported tungstophosphoric acid (PW) nanocluster was prepared for use in solid-phase microextraction (SPME) of polycyclic aromatic hydrocarbons (PAHs). The PWs represent a class of discrete transition metal-oxide nanoclusters and their structures resemble discrete fragments of metal-oxide structures of definite size and shape. Transition metal-oxide nanoclusters display large structural diversity, and their monodisperse sizes can be tuned from several Ångstroms up to 10 nm. The highly porous silica-supported tungstophosphoric acid nanocluster material is found to be capable of efficiently extracting PAHs from aqueous sample solutions. The nanomaterial was immobilized on a stainless steel wire for fabrication of the SPME fiber. Following thermal desorption, the PAHs were quantified by GC-MS. Analytical merits include limits of detection that range from 0.02 to 0.1 pg mL^?1 and a dynamic range as wide as from 0.001 to 100 ng mL^?1. Under optimum conditions, the repeatability for one fiber (n?=?3), expressed as the relative standard deviation, is between 4.3 % and 8.6 %. The method is simple, rapid, and inexpensive. The thermal stability of the fiber and the high relative recovery make this method superior to conventional methods of extraction.

The highly porous silica-supported tungstophosphoric acid nanocluster material is found to be capable of efficiently extracting PAHs from aqueous sample solutions. The prepared nanomaterial was immobilized onto a stainless steel wire for fabrication of the SPME fiber. Following thermal desorption, the PAHs were quantified by GC-MS.     

A colorimetric assay for d-Penicillamine in urine and plasma samples based on the aggregation of gold nanoparticles

We report herein the development of a highly sensitive colorimetric method for detection of d-Penicillamine using citrate-capped gold nanoparticles (AuNPs). This assay relies upon the distance-dependent of gold nanoparticles surface plasmon resonance band of gold nanoparticles. By replacing the thiol-containing chelator drug, d-Penicillamine, with citrate on the gold nanoparticles surface, a new peak appearing at a longer wavelength intensifies and shifts further to the red from the original peak position due to aggregation of gold nanoparticles which depends on ionic strength, gold nanoparticles and d-Penicillamine concentration. During this process, the plasmon band at 521 nm decreases gradually along with the formation of a new red-shifted band at 630 nm. The calibration curve which is derived from the ratio intensities of absorbance at longer wavelength (630 nm) to original wavelength (521 nm) displays a linear relation in the range of 5.0 × 10^?6–3.0 × 10^?4 M d-Penicillamine. Lower limit of detection for d-Penicillamine, at the signal-to-noise ratio of 3 (3σ), was 3.8 × 10^?6 M. The developed methodology was successfully applied for the determination of d-Penicillamine in human urine and plasma.     

Kinetics and possible mechanism of hydrogen chloride oxidation over supported copper-containing salt catalysts: II. Kinetics of HCl oxidation in the deacon and methane oxychlorination reactions over the CuCl2-KCl-LaCl3 catalyst

The kinetics of HCl oxidation at 350–425°C over the supported CuCl₂-KCl-LaCl₃ catalyst has been investigated using a gradientless technique. The HCl oxidation kinetics in the Deacon and methane oxychlorination reactions has been studied in order to substantially extend the \(Cl_2 \left( {P_{Cl_2 } } \right)\) partial pressure variation range. When the reaction rate is independent of P _HCl, HCl oxidation on the copper-potassium catalysts is described by the same rate equation, irrespective of whether the catalyst contains lanthanum or not. The introduction of lanthanum chloride increases the HCl oxidation rate by one order of magnitude. The rate equation obtained has significant advantages over the equation corresponding to the Kenney-Slama equation. The kinetic features of HCl oxidation over the lanthanum-containing catalyst, whether the process depends on P _HCl or not, can be explained in terms of the superposition of the Kenney-Slama dissociative mechanism and the catalytic mechanism suggested here. The role of lanthanum chloride in both HCl oxidation pathways is considered.