1,2,3-三氮杂苯-水复合物氢键相互作用

Density functional theory B3LYP method with 6-31++G** basis was used to optimize the geometries of the ground states for 1,2,3-triazine-(H2O)n (n=1,2,3) complexes. All calculations indicate that the 1,2,3-triazine-water complexes in the ground states have strong hydrogen-bonding interaction, and the complex having a N…H-O hydrogen bond and a chain of water molecules which is terminated by a O…H-C hydrogen bond is the most stable. The H-O stretching modes of complexes are red-shifted relative to that of the monomer. In addition, the Natural bond orbit (NBO) analysis indicates that the intermolecular charge transfer between 1,2,3-triazine and water is 0.0222e, 0.0261e and 0.0273e for the most stable 1:1, 1:2 and 1:3 complexes, respectively. The first singlet (n, π*) vertical excitation energy of the monomer 1,2,3-triazine and the hydrogen-bonding complexes of 1,2,3-triazine-(H2O)n were investigated by time-dependent density functional theory.     

三氮杂苯-水氢键复合物的结构与性质

使用密度泛函理论B3LYP方法对三氮杂苯-水氢键复合物的基态结构与相互作用进行理论研究. 结果表明1,2,3-三氮杂苯-水, 1,2,4-三氮杂苯-水和1,3,5-三氮杂苯-水复合物基态分别具有Cs, Cs和C₁对称性和强的氢键相互作用, 经基组重叠误差和零点振动能校正后的相互作用能分别为–17.83, –17.38和–13.55 kJ/mol. 三氮杂苯-水复合物中, N∙∙∙H—O氢键的形成使水的H—O对称伸缩振动频率明显红移. 同时使用含时密度泛函理论研究了三氮杂苯单体及其与水形成的氢键复合物的第一¹(n, π^*)激发态的垂直激发能.     

二氮杂苯－水氢键复合物结构性质的理论研究

使用密度泛函理论B3LYP方法和从头算MP2方法优化二氮杂苯－水复合物的基态氢键结构和相互作用能的计算。结果表明，邻二氮杂苯－水，间二氮杂苯－水，对二氮杂苯－水复合物具有强的N∙∙∙H─O氢键相互作用，经基组重叠误差和零点能校正后的氢键相互作用能分别为-20.99, -16.73 和-15.31 kJ/mol，氢键的形成使水的H─O对称伸缩振动频率明显红移（减小）。自然键轨道NBO分析显示，氢键的形成，分子间电荷转移分别为0.0316 e，0.0255 e 和0.0265 e。另外，使用含时密度泛函理论TD-DFT (TD-B3LYP)方法计算了二氮杂苯单体与氢键复合物的第一单重态(n, p^*)激发态的垂直激发能。     

邻二氮杂苯-水复合物的氢键结构与性质

用密度泛函理论B3LYP方法和MP2方法对邻二氮杂苯-水复合物基态的氢键结构与相互作用能进行了理论计算,结果表明复合物之间存在较强的氢键N…H－O.在复合物中,水的H－O对称伸缩振动频率明显红移.同时,使用含时密度泛函理论方法计算了邻二氮杂苯单体及复合物的低占据1(n,π*) 和1(π,π*) 态的垂直激发能,计算结果与实验值吻合较好.     

1,2,4-三氮杂苯-(H2O)n复合物氢键相互作用的密度泛函理论研究

用密度泛函理论方法在B3LYP/6-31++G**水平上对1,2,4-三氮杂苯-(H₂O)_n (n＝1, 2, 3)氢键复合物的基态进行了结构优化和能量计算, 结果表明复合物之间存在较强的氢键作用, 所有稳定复合物结构中形成一个N…H—O氢键并终止于弱O…H—C氢键的氢键水链的构型最稳定. 同时, 用含时密度泛函理论方法(TD-DFT)在TD-B3LYP/6-31++G**水平上计算了1,2,4-三氮杂苯单体及其氢键复合物的单重态第一¹(n, π^*)垂直激发能.     

1,2,4-三氮杂苯-(H2O)n复合物氢键相互作用的密度泛函理论研究

用密度泛函理论方法在B3LYP／6—31 G**水平上对1，2，4-三氮杂苯-(H2O)n(n=1，2，3)氢键复合物的基态进行了结构优化和能量计算，结果表明复合物之间存在较强的氢键作用，所有稳定复合物结构中形成一个N…H--O氢键并终止于弱O…H—C氢键的氢键水链的构型最稳定．同时，用含时密度泛函理论方法(TD—DPT)在TD—B3LYP／6—31 G**水平上计算了1,2，4-三氮杂苯单体及其氢键复合物的单重态第-1(n，π*)垂直激发能．     

新型1,5-苯并二氮杂卓衍生物的结构与抑菌活性的理论分析

采用密度泛函理论(DFT)方法,在B3LYP/6-31G(d,p)水平上对一系列新型1,5-苯并二氮杂卓衍生物进行了几何结构全优化和理论计算研究,得到分子的几何结构、NPA电荷、红外振动光谱及轨道贡献。研究结果表明:1,5-苯并二氮杂卓分子的七元环是扭船式构型;分子不同位置连接不同的取代基,对分子的电荷分布有一定影响;红外光谱理论计算结果与实验结果相吻合。通过探讨前线轨道与抑菌活性的关系发现,所研究的杂卓分子对不同菌株的抑菌活性具有选择性和特异性,其中分子中的N(11)和C=N可能分别是所合成的该类化合物与细菌(枯草杆菌)和真菌(白色念珠菌和新型隐球菌)发生作用的主要活性部位。     

3,4,5-三羟基苯甲酸二聚体氢键结构性质

分子间相互作用在生物和材料等科学中发挥着关键作用,研究分子间相互作用的本质意义重大。氢键是分子间相互作用的一种主要形式,在确定分子构象和晶体结构以及生物分子尤其是核酸和蛋白质的结构功能中起着重要作用[1-3]。苯甲酸衍生物广泛存在于生物大分子内,与生物活性离子通过氢键作用等改变生物活性分子的活性功能,研究苯甲酸衍生物分子间氢键相互作用对于了解生物体内的化学现象具有重要意义。研究表明菱角的抗肿瘤作用明显,实验上已经从菱角中成功提取了活性单体化合物:3,4,5-三羟基苯甲酸二聚体[4],理论研究标题化合物的氢键结构与氢…     

阳离子-π体系相互作用的理论研究Ⅲ.碱金属阳离子-苯复合物体系的量子化学研究

运用ab initio Hartree-Fock从头算,微扰MP2和密度泛函B3LYP方法在不同的基组水平上对碱金属阳离子-苯复合物体系的可能构型进行了自由优化,得到了复合物的能量最低构型为碱金属阳离子位于苯环平面的正上方,频率计算结果表明该结构为稳定结构.复合物的键长、原子净电荷、分子轨道系数、前沿轨道能量、Mullicken键级等都表明,碱金属阳离子和苯环碳原子之间的作用包含p-π作用方式,碱金属阳离子与苯结合时电子从苯环向碱金属阳离子转移,形成电荷转移复合物.它们之间的结合方式和氢键的结合方式相似,但计算得到的热力学参数表明复合物中碱金属阳离子与苯之间的结合强度远远大于典型的氢键,尤其是锂离子-苯复合物的生成焓已和普通的化学键相当.复合物的红外特征振动频率位于200cm-1附近,对应于碱金属阳离子垂直于苯环平面的来回振动,同时形成复合物后,原来位于3200cm-1的苯的C-H振动红外活性消失.     

阳离子-π体系相互作用的理论研究Ⅱ.铵离子-二苯复合物体系的密度泛函研究

运用密度泛函B3LYP/6-31G*方法对铵离子-二苯复合物体系的可能构型进行了结构优化,得到了复合物的能量最低构型为:铵离子位于两个苯环平面之间分别以两个氢原子和苯环作用,频率计算结果表明该构型为稳定结构.复合物的键长、原子净电荷、分子轨道系数、前沿轨道能量、Mullicken键级等都表明,铵氢原子和与之接近的苯环碳原子之间通过s-π相互作用而实现铵与两个苯环的结合,结合时电子从苯环向铵转移,形成电荷转移复合物.它们之间的结合方式和铵离子-苯复合物及典型氢键的结合方式相似,计算得到的热力学参数证明了这一点.复合物的红外特征振动频率位于230em-1附近,振动方式为铵平行于苯环平面来回振动.     

Structure and property of the hydrogen bonding complex between triazines and water

The study of the intermolecular interactions that drive the solvation of six-membered nitrogenated aromatic rings is of particular importance since they are known to constitute key building blocks of pro- teins and nucleotides[1―5]. The investigation of the 1:1 adduct of these molecules with water will be the first step in the understanding of such interactions. These molecules possess two different proton-acceptor sites: the ring π cloud and the lone pairs of electrons on the nitrogen atoms…     

Theoretical study on the structure and UV–visible spectrum of pyridine–chloranil charge-transfer complex

The ground-state structure of the charge-transfer complex formed by pyridine (Py) as electron donor and chloranil (CA) as acceptor has been studied by full geometry optimization at the MP2 and DFT levels of theory. Binding energies were calculated and counterpoise corrections were used to correct the BSSE. Both MP2 and DFT indicate that the pyridine binds with chloranil to form an inclined T-shape structure, with the pyridine plane perpendicular to the chloranil. The CP and ZPE corrected binding energies were calculated to be 14.21 kJ/mol by PBEPBE/6-31G(d) and 23.21 kJ/mol by MP2/6-31G(d). The charge distribution of the ground state Py–CA complex was evaluated with the natural population analysis, showing a net charge transfer from Py to CA. Analysis of the frontier molecular orbitals reveals a σ–π interaction between CA and Py, and the binding is reinforced by the attraction of the O₇ atom of CA with the H₂₃ atom of Py. TD-DFT calculations have been performed to analyze the UV–visible spectrum of Py–CA complex, revealing both the charge transfer transitions and the weak symmetry-relieved chloranil π–π^* transition in the UV–visible region.     

1,2,3-三氨基胍二硝基胍盐的合成与量子化学研究

以1,2,3-三氨基胍盐酸盐和二硝基胍为原料,制备了一种新型含能离子盐1,2,3-三氨基胍二硝基胍盐,并对其结构进行了表征. 运用密度泛函理论（DFT）方法,在B3LYP/6-31+G^**水平下计算得到了该盐的几何结构、自然原子电荷分布、前线轨道能量及红外光谱,同时计算了热容、焓及熵等热力学参数,并分析了这些参数和温度之间的函数关系;利用Born-Haber循环求得该化合物的生成热为150.54 kJ/mol;利用Monte-Carlo方法预测了该化合物的理论密度为1.56 g/cm³;基于以上数据进一步计算得到该化合物的爆速为7.81 km/s,爆压为24.74 GPa.     

Computational study of hydrogen bonding interaction between formamide and nitrosyl hydride

The hydrogen bonding interaction of formamide–nitrosyl hydride complex has been investigated using density functional theory (DFT) and ab initio method. The natural bond orbital (NBO) analysis and atom in molecules (AIM) theory were applied to understand the nature of the interaction. Two stable geometries are found on the potential energy surface, a six-membered cyclic structure of complex A and a seven-membered cyclic structure of complex B, characterized by AIM analysis. Complex A is less stable than complex B. It is confirmed that there are contractions of CH (compared with the monomer HCONH₂), NH bonds (compared with the monomer HNO) and the corresponding stretching vibrational frequencies are blue-shifted, while there is an elongation of the NH bond and the corresponding stretching vibrational frequency is red-shifted, relative to those of the monomer HCONH₂. From NBO analysis, it is evident that the electron densities in the σ^* (CH) and σ^*(NH) of the complex A are less than those of the monomers HCONH₂ and HNO, which strengthen CH and NH bonds. Furthermore, the increases in s-characters of X also strengthen XH bonds.     

Density functional complete study of hydrogen bonding between the water molecule and the hydroxyl radical (H2O · HO)

The hydrogen bonding complexes formed between the H₂O and OH radical have been completely investigated for the first time in this study using density functional theory (DFT). A larger basis set 6‐311++G(2d,2p) has been employed in conjunction with a hybrid density functional method, namely, UB3LYP/6‐311++G(2d,2p). The two degenerate components of the OH radical ²Π ground electronic state give rise to independent states upon interaction with the water molecule, with hydrogen bonding occurring between the oxygen atom of H₂O and the hydrogen atom of the OH radical. Another hydrogen bond occurs between one of the H atoms of H₂O and the O atom of the OH radical. The extensive calculation reveals that there is still more hydrogen bonding form found first in this investigation, in which two or three hydrogen bonds occur at the same time. The optimized geometry parameter and interaction energy for various isomers at the present level of theory was estimated. The infrared (IR) spectrum frequencies, IR intensities, and vibrational frequency shifts are reported. The estimates of the H₂O · OH complex's vibrational modes and predicted IR spectra for these structures are also made. It should be noted that a total of 10 stationary points have been confirmed to be genuine minima and transition states on the potential energy hypersurface of the H₂O · HO system. Among them, four genuine minima were located. © 2002 Wiley Periodicals, Inc. Int J Quantum Chem, 2002     

Density functional theory study of the hydrogen bonding interaction of 1:1 complexes of serine with water

The hydrogen bonding of 1:1 complexes formed between serine and water molecules were completely investigated in the present study employing ab initio and Density Functional Theory (DFT) methods at varied basis set levels from 6‐31g to 6‐311++g (2d,2p). For comparison, we also used the second‐order Moller–Plesset Perturbation (MP2) method at the 6‐31+g(d) level. Twelve reasonable geometries on the potential energy hypersurface of serine and water system were considered with the global minimum, 10 of which are cyclic double‐hydrogen bonded structures and the other two are one‐hydrogen bonded structures. The optimized geometric parameters and interaction energies for various isomers at different levels were estimated. The infrared spectrum frequencies, IR intensities, and the vibrational frequency shifts are reported. Finally, the solvent effects on the geometries of the serine–water complexes were also investigated using self‐consistent reaction‐field (SCRF) calculations at the B3LYP/6‐311++g(d,p) level. The results indicate that the polarity of the solvent played an important role in the structures and relative stabilities of different isomers. © 2005 Wiley Periodicals, Inc. Int J Quantum Chem, 2005     

Methyl hydrogen peroxide dimer: A structural study

Methyl hydrogen peroxide (MHP) exhibits a tendency to form a stable dimer by hydrogen-bonding. Ab initio theoretical investigations on methyl hydrogen peroxide dimer (MHPD) carried out herein lead to several energetically stable structures that have a direct bearing on the reactivity of the monomer in terms of its molecular electrostatic potential (MESP). To gauge the role played by the electron-correlation in lending stability to MHP and its dimer, we employ the density functional theory (DFT) (as implemented by B3LYP-functional), and subsequently second order Møller-Plesset (MP2) perturbation theory, using the basis sets 6-31G(d, p) and 6-311++G(2d, 2p). Simulated infra-red vibrational spectra lead to spectral intensity redistribution upon dimerization. Energetically the lowest MHPD is endowed with inversion symmetry and has two hydrogen bonds, while three other structures emerge: one energetically very close with two H-bonds, and the two others, with three H-bonds each, yet higher by about 2 kcal mol⁻¹.     

Theoretical study on the structure and property relationship of the cationic conjugated polyelectrolytes

A theoretical study using density functional theory was performed to understand the structure/property relationship of the cationic conjugated polyelectrolytes, poly[9,9-bis-(6′-N,N,N-trimethylammonium) hexyl] fluorene-alt-4,7-(2,1,3-benzothiadiazole)] (PFBT-X, where X = Br). The torsion angle between the fluorene and benzothiadiazole units in the PFBT monomer was found to substantially affect the structural and electronic properties of the cationic PFBT monomer. The changes of geometrical parameter, HOMO and LUMO energy levels, and band gap, as well as the absorption maximum are discussed in terms of the torsion in the PFBT monomer structure. For comparison, its neutral analogue, the monomer of poly(9,9-di-n-octylfluorene-alt-benzothiadiazole) (F8BT) was also studied. The length of conjugation backbone was also examined.