Efficient implementation of restricted active space configuration interaction with the hole and particle approximation

The restricted active space configuration interaction (RASCI) formalism with the hole and particle truncation of the wavefunction, that is, RASCI(h,p), holds very nice properties such as balanced treatment of ground and low‐lying excited states, spin‐completeness, large flexibility of the wavefunction, and moderate computational cost. In this article, I present a new implementation of the RASCI(h,p) method using a general algorithm based on the integral‐driven approach. The new implementation allows to choose any electronic configuration as the single reference in combination with an excitation operator with any number of ionization, electron attachment, or spin‐flip (SF) excitations. The applicability and good performance of the new computational code is tested in the ground state calculation of water molecule with increasingly large active spaces and up to the full‐CI limit, the calculation of all‐trans linear polyenes with variable number of SF excitations, and the low‐lying states of fluorine molecule with a double‐ionization potential operator. © 2012 Wiley Periodicals, Inc.     

Palladium‐Catalyzed Formal Cross‐Coupling of Diaryl Ethers with Amines: Slicing the 4‐O‐5 Linkage in Lignin Models

Lignin is the second most abundant organic matter on Earth, and is an underutilized renewable source for valuable aromatic chemicals. For future sustainable production of aromatic compounds, it is highly desirable to convert lignin into value‐added platform chemicals instead of using fossil‐based resources. Lignins are aromatic polymers linked by three types of ether bonds (α‐O‐4, β‐O‐4, and 4‐O‐5 linkages) and other C?C bonds. Among the ether bonds, the bond dissociation energy of the 4‐O‐5 linkage is the highest and the most challenging to cleave. To date, 4‐O‐5 ether linkage model compounds have been cleaved to obtain phenol, cyclohexane, cyclohexanone, and cyclohexanol. The first example of direct formal cross‐coupling of diaryl ether 4‐O‐5 linkage models with amines is reported, in which dual C(Ar)?O bond cleavages form valuable nitrogen‐containing derivatives.     

Molecular parameters of tetraatomic carbonyls X2CO and XYCO (X,Y = H,F, Cl) in the ground and lowest excited electronic states,part 1: A test of ab initio methods

Geometrical parameters of tetraatomic carbonyl molecules X₂CO and XYCO (X, Y = H, F, Cl) in the ground (S₀) and lowest excited singlet (S₁) and triplet (T₁) electronic states as well as values of barriers to inversion in S₁ and T₁ states and S₁ ← S₀ and T₁ ← S₀ adiabatic transition energies were systematically investigated by means of various quantum‐chemical techniques. The following methods were tested: HF, MP2, CIS, CISD, CCSD, EOM‐CCSD, CCSD(T), CR‐EOM‐CCSD(T), CASSCF, MR‐MP2, CASPT2, CASPT3, NEVPT2, MR‐CISD, and MR‐AQCC within cc‐pVTZ and cc‐pVQZ basis sets. The accuracy of quantum‐chemical methods was estimated in comparison with experimental data and rather accurate structures of excited electronic states were obtained. MP2 and CASPT2 methods appeared to be the most efficient and CCSD(T), CR‐EOM‐CCSD(T), and MR‐AQCC the most accurate. It was found that at equilibrium all the molecules under study are nonplanar in S₁ and T₁ electronic states with CO out‐of‐plane angle ranging from 34° (H₂CO, S₁) to 52° (F₂CO, T₁), and height of barrier to inversion varying from 300 (H₂CO, S₁) to 11,000 (F₂CO, T₁) cm^?1. © 2008 Wiley Periodicals, Inc. Int J Quantum Chem, 2009     

Correlation effects in the valence x-ray photoionization spectra of ethylene,butadiene, and hexatriene

The x-ray photoemission spectra of the ethylene, butadiene, and hexatriene compounds were investigated using one-particle Green's function calculations which are exact up to third order in correlation. This study points to the importance of initial-state correlation and cross-section effects for a consistent reproduction of satellite bands recorded under x-ray photoionization. By extrapolating the results obtained to larger unsaturated hydrocarbons, it is clear that the signal recorded in the inner-valence region of polyacetylene must be exclusively assigned to many-body structures. This study also provides evidence for a partial contamination of the outer-valence band by shake-up lines. © 1997 John Wiley & Sons, Inc. Int J Quant Chem 63: 465–481, 1997     

Importance of Pd and Pt excited states in N2O capture and activation: A comparative study with Rh and Au atoms

Nitrous oxide (N₂O) is an intermediate compound formed during catalysis occurring in automobile exhaust pipes. In this work, the N₂O capture and activation by Pt and Pd atoms in the ground and excited states of many multiplicities are studied. Pt and Pd + N₂O reactions are studied at multireference second‐order perturbation level of theory using C_s symmetry. The PtN₂O (¹A′, ⁵A′, and ⁵A″) species are spontaneously created from excited states. Only the ⁵A′ and ⁵A″ states exhibit N₂O activation reaction paths when N₂O approaches Pt end‐on by the N or O atoms side or side‐on yielding NO or N₂ as products, respectively. Pt⁺ cations ground and excited states, capture N₂O, although only Pt⁺ (⁶A′ and ⁶A″) states show N₂O activation yielding O and N₂ as products. In the Pd atom case, PdN₂O (¹A′ and ⁵A″) species are also spontaneously created from excited states. The ⁵A″ state exhibits N₂O activation yielding N₂ + O as products. Pd⁺ cations in both ground and excited states capture N₂O; however, only the [PdN₂O]⁺ (⁴A′, ⁴A″, ⁶A′, and ⁶A″) states in side‐on approaches and (⁶A′) in end‐on approach activate the N₂O and yield the N₂ bounded to the metal and O as product. The results obtained in this work are discussed and compared with previous calculations of Rh and Au atoms. The reaction paths show a metal–gas dative covalent bonding character. Löwdin charge population analyses for Pt and Pd active states show a binding done through charge donation and retrodonation between the metals and N₂O. © 2013 Wiley Periodicals, Inc.     

Preparation of Long-Lived States in a Multi-Spin System by Using an Optimal Control Method

The lifetime Ts of a long-lived nuclear spin state (LLS) could be much longer than the longitudinal order T₁. Many spin systems were used to produce long-lived states, including two or more homonuclear spins that couple to each other. For multiple homonuclear spins with rather small chemical shift difference, normally it is difficult to selectively control the spins and then to prepare a LLS. Herein, we present a scheme that prepares different spin orders in a multi-spin system by using optimal control and numerical calculation. By experimentally measuring the lifetime of the states, we find that for a three-spin physical system, although there are many forms of state combinations with different spin orders, each component has its own lifetime.     

Structures of 1,2,3-trihydroxybenzene in the S0 and S1 states

In this paper we report on the structure and vibrations of gaseous pyrogallol (1,2,3-trihydroxybenzene) in the electronic ground state (S₀) and its first electronically excited state (S₁). Both ab initio CASSCF/CASMP2 calculations as well as R2PI spectroscopy have been performed. From the ab initio calculations three minimum energy structures are obtained and the vibrations of two structures are observed in the R2PI spectra. The minimum energy structures differ by their OH torsional angles. The full three-dimensional potential energy surface of the coupled torsional motions is investigated and the three-dimensional eigenvalues are calculated. The most stable structure of pyrogallol contains two intramolecular hydrogen bonds and turns out to be planar in the S₀ state. In the S₁ state the free OH group is rotated out of the plane of the aromatic ring by about 40°. The strong change in geometry of this structure is predicted by the CASSCF calculations and confirmed by the R2PI spectra of pyrogallol and its deuterated species. The low frequency region of the R2PI spectra can be explained by a torsional motion and the out of plane vibration 17b.     

Theoretical investigation on regioselectivity of aromatic ketones in the addition with olefin catalyzed by RuH2(CO)(PPh3)3

Ab initio method is employed to study the structures of twelve aromatic ketones at HF/3-21G, HF/6-31G and HF/6-31G levels, respectively. A theoretical analysis is also carried out to study the regioselectivity and reactivity of aromatic ketones in the addition with olefin catalyzed by RuH2(CO)(PPh3)3. The results indicate that a U shape LUMO conjugation of aromatic ketones in a plane plays an important role in regioselectivity on the cleavage of p C-H bond and is a nec-essary factor to success of addition with olefin, and that sterle effect is an indispensable factor in forming additional ortho-product. Meanwhile, electronic effect may influence the rate of addition for the structures alike which only have different replacements in the same site of aromatic ring, such as furan, thiophene and pyrole. A possible catalytic reaction mechanism is proposed that the addition of C-H bond may be carried out by a coordination of aromatic ketones with Ru complex.     

A tandem reaction of 2-acetylmethylene-1,3-dithiolanes via fragmentation of the dithiolane ring in the presence of amines: a facile route to functionalized thioamides

A facile and efficient route to functionalized thioamides has been developed by a tandem reaction of 2-acetylmethylene-1,3-dithiolanes via fragmentation of the dithiolane ring upon heating and in the presence of an amine.     

距离比较法构建M1受体激动剂药效团模型

在M1受体三维结构未知的情况下,利用距离比较法（DISCO）对24个具有M1受体激动活性的化合物进行了研究,构建了M1受体激动剂可能的药效团模型,为设计新M1受体激动剂提供了参考,并以此为提问结构在ACD数据库和中草药数据系统（TCMDB）中进行搜索,得到一系列结构新颖并可能具有M1激动活性的化合物.     

Ab initio study on the electronic structures of styrene in the Franck-Condon region

The electronic structures of styrene in the Franck‐Condon region have been theoretically examined by means of ab initio complete active space self‐consistent field (CASSCF) and the second order multireference Møller‐Plesset calculations. The optimized structure of styrene in S₀ is planar but the torsional motion of the phenyl group is very floppy. The S₁ state is assigned to the local π–π* excitation within the benzene ring. On the other hand, S₂, above S₁ by 0.561 eV, is assigned to a state that resembles the so‐called V‐state of ethylene. The transition intensity of S₀–S₁ is weak, while that of S₀–S₂ is strong. This is in good agreement with the experimental absorption spectrum where the S₀–S₁ and S₀–S₂ transitions are in the energy range of 290–220 nm. The optimized geometry of S₁, characterized by an enlarged benzene ring and its vibrational analyses, further justifies the assignment of the S₁ state. © 2002 Wiley Periodicals, Inc. J Comput Chem 9: 928–937, 2002     

Toward assessment of density functionals for vibronic coupling in two‐photon absorption: A case study of 4‐nitroaniline

In this study, we predict vibronic two‐photon absorption (TPA) spectra for 4‐nitroaniline in vacuo. The simulations are performed using density functional theory and the approximate second‐order coupled‐cluster singles and doubles model CC2. Thereby we also demonstrate the possibility of simulations of vibronic TPA spectra with ab initio wavefunction methods that include electron correlation for medium‐sized systems. A special focus is put on the geometric derivatives of the second‐order transition moment and the dipole moment difference between the charge‐transfer excited state and the ground state. The results of CC2 calculations bring new insight into the vibronic coupling mechanism in TPA spectra of 4‐nitroniline and demonstrate that the mixed term is quite large and that it also exhibits a negative interference with the Franck‐Condon contribution. © 2015 Wiley Periodicals, Inc.     

Determination of energy minima and saddle points using multireference configuration interaction methods in combination with reduced gradient following: the S(0) surface of H(2)CO and the T(1) and T(2) surfaces of acetylene

The implementation of the reduced gradient following (RGF) method into the COLUMBUS quantum-chemical program system is reported using the newly developed analytic MR-CISD/AQCC gradient feature. By this combination a very useful tool has been developed for general searches of stationary points on ground- and excited-state energy surfaces. This procedure is applied to the S(0) surface of H(2)CO and the T(1) and T(2) surfaces of acetylene. For H(2)CO we investigated three minima (formaldehyde, s-trans, and s-cis hydroxycarbene) and five saddle points. For the T(1) and T(2) states of acetylene the cis- and trans-minima and the planar and nonplanar saddle points were computed.     

Electronic excitations of the green fluorescent protein chromophore in its protonation states: SAC/SAC-CI study

Two ground-state protonation forms causing different absorption peaks of the green fluorescent protein chromophore were investigated by the quantum mechanical SAC/SAC-CI method with regard to the excitation energy, fluorescence energy, and ground-state stability. The environmental effect was taken into account by a continuum spherical cavity model. The first excited state, HOMO-LUMO excitation, has the largest transition moment and thus is thought to be the source of the absorption. The neutral and anionic forms were assigned to the protonation states for the experimental A- and B-forms, respectively. The present results support the previous experimental observations.     

New pecJ-n (n = 1, 2) Basis Sets for High-Quality Calculations of Indirect Nuclear Spin–Spin Coupling Constants Involving 31P and 29Si: The Advanced PEC Method

In this paper, we presented new J-oriented basis sets, pecJ-n (n = 1, 2), for phosphorus and silicon, purposed for the high-quality correlated calculations of the NMR spin–spin coupling constants involving these nuclei. The pecJ-n basis sets were generated using the modified version of the property-energy consistent (PEC) method, which was introduced in our earlier paper. The modifications applied to the original PEC procedure increased the overall accuracy and robustness of the generated basis sets in relation to the diversity of electronic systems. Our new basis sets were successfully tested on a great number of spin–spin coupling constants, involving phosphorus or/and silicon, calculated within the SOPPA(CCSD) method. In general, it was found that our new pecJ-1 and pecJ-2 basis sets are very efficient, providing the overall accuracy that can be characterized by MAEs of about 3.80 and 1.98 Hz, respectively, against the benchmark data obtained with a large dyall.aae4z⁺ basis set of quadruple-ζ quality.     

Theoretical investigation on regioselectivity of aromatic ketones in the addition with olefin catalyzed by RuH2(CO)(PPh3)3

Ab initio method is employed to study the structures of twelve aromatic ketones at HF/3-21G, HF/6-31G and HF/6-31G* levels, respectively. A theoretical analysis is also carried out to study the regioselectivity and reactivity of aromatic ketones in the addition with olefin catalyzed by RuH₂(CO)(PPh₃)₃. The results indicate that a U shape LUMO conjugation of aromatic ketones in a plane plays an important role in regioselectivity on the cleavage of β C-H bond and is a necessary factor to success of addition with olefin, and that steric effect is an indispensable factor in forming additional ortho-product. Meanwhile, electronic effect may influence the rate of addition for the structures alike which only have different replacements in the same site of aromatic ring, such as furan, thiophene and pyrole. A possible catalytic reaction mechanism is proposed that the addition of C-H bond may be carried out by a coordination of aromatic ketones with Ru complex.     

距离比较法构建M1受体激动剂药效团模型

在M1受体三维结构未知的情况下,利用距离比较法(DISCO)对24个具有Mi受体激动活性的化合物进行了研究,构建了Mi受体激动剂可能的药效团模型,为设计新M1受体激动剂提供了参考,并以此为提问结构在ACD数据库和中草药数据系统(TCMDB)中进行搜索,得到一系列结构新颖并可能具有Mi激动活性的化合物.     

Effects of Modifications on the Immunosuppressive Properties of Cyclolinopeptide A and Its Analogs in Animal Experimental Models

The consequences of manipulations in structure and amino acid composition of native cyclolinopeptide A (CLA) from linen seeds, and its linear precursor on their biological activities and mechanisms of action, are reviewed. The modifications included truncation of the peptide chain, replacement of amino acid residues with proteinogenic or non-proteinogenic ones, modifications of peptide bond, and others. The studies revealed changes in the immunosuppressive potency of these analogs investigated in a number of in vitro and in vivo experimental models, predominantly in rodents, as well as differences in their postulated mechanism of action. The modified peptides were compared with cyclosporine A and parent CLA. Some of the synthesized and investigated peptides show potential therapeutic usefulness.