O6-(benzotriazol-1-yl)inosine derivatives: easily synthesized, reactive nucleosides

A novel class of O6-(benzotriazol-1-yl)inosine as well as the corresponding 2'-deoxy derivatives can be conveniently prepared by a reaction between sugar-protected or -unprotected inosine or 2'-deoxyinosine nucleosides and 1H-benzotriazol-1-yloxy-tris(dimethylamino)phosphonium hexafluorophosphate (BOP). The reaction appears to proceed via a nucleoside phosphonium salt, and in the absence of any additional nucleophile, the released 1-hydroxybenzotriazole undergoes reaction with the formed phosphonium salt leading to the requisite O6-(benzotriazol-1-yl)inosine or 2'-deoxyinosine derivatives. Isolation and characterization of the phosphonium salt as well as analysis by 31P{1H} NMR appear to be consistent with this reaction pathway. The resulting O6-(benzotriazol-1-yl)inosine derivatives are effective as electrophilic nucleosides, undergoing facile reactions with a variety of nucleophiles such as alcohols, phenols, amines, and a thiol. Unusual and challenging nucleoside derivatives such as an aryl-bridged dimer, a nucleoside-amino acid conjugate, and a nucleoside-nucleoside dimer have also been synthesized from the O6-(benzotriazol-1-yl)-2'-deoxyinosine derivative. Finally, a fully protected DNA building block, the O6-(benzotriazol-1-yl)-2'-deoxyinosine 5'-O-DMT 3'-O-phosphoramidite, has been prepared and a preliminary evaluation of its use for DNA modification has been performed. Results from these studies indicate several important facts: A single, simple methodological approach provides a class of stable, isolable ribo and 2'-deoxyribonucleoside derivatives that possess excellent reactivity for SNAr chemistry with a wide range of nucleophiles. Also, a benzotriazolyl nucleoside phosphoramidite appears to be a suitable reagent for incorporation into DNA for purposes of site-specific DNA modification.     

The scope and mechanism of phosphonium-mediated S(N)Ar reactions in heterocyclic amides and ureas

An efficient "one-step" synthesis of cyclic amidines and guanidines has been developed. Treatment of cyclic amides and ureas with benzotriazol-1-yloxytris(dimethylamino)phosphonium hexafluorophosphate (BOP), base, and nitrogen nucleophiles leads to the formation of the corresponding cyclic amidines and guanidines, typically in good to excellent yields. This method has also been used to prepare heteroaryl ethers and thioethers using phenol and thiophenol nucleophiles. Time course NMR and HPLC-MS studies have facilitated explicit characterization of the proposed intermediates (the phosphonium salt and HOBt adduct); the data reveal a stepwise reaction pathway.     

Synthetic Studies of a Didemnin B Analog Based on a 2,3‐Diamino Sugar Scaffolding

Reductive amination, amide formation using BOP [(1H‐1,2,3‐benzotriazol‐1‐yloxy)tris(dimethylamino)‐phosphonium hexafluorophosphate] and esterification via DCC (dicyclohexylcarbodiimide) were the key synthetic steps to generate an advanced intermediate in the preparation of a didemnin B analog based on a sugar scaffolding ( 2 ). This analog should provide insight into the bioactive conformation of didemnin B.     

Efficient peptide coupling method of conjugated carboxylic acids with methyl ester amino acids hydrochloride. Application to the synthesis of Fa-Met, an important enzymatic substrate

Benzotriazol-1-yloxytris(dimethylamino)phosphonium hexafluorophosphate reagent (BOP) serves as an efficient and versatile coupling reagent for the coupling of conjugated carboxylic acid with methyl ester amino acids hydrochloride allowing the synthesis of various substituted amino acid derivatives in high chemical yields of up to 90%. The usefulness of this method is illustrated in the synthesis of Fa-Met, an important enzymatic substrate.     

Nitration of 2'-deoxyguanosine by a NO/O2 gas mixture: identification and characterization of N2-nitro-2'-deoxyguanosine

[reaction: see text] A gas mixture of NO and O(2) was bubbled into 2'-deoxyguanosine solution at neutral pH and 37 degrees C. A novel nitrated nucleoside was generated in the reaction mixture in addition to 8-nitroguanine, 8-nitroxanthine, 2'-deoxyxanthosine, xanthine, and guanine. The novel nucleoside was identified as N(2)-nitro-2'-deoxyguanosine by spectrometric data.     

Solid phase organic synthesis of piperazinone containing enkephalin mimetics: a readily derivatized, traceless scaffold

The solid phase synthesis of a series of piperazinone-derived Leu-enkephalin analogues is presented. The initial step in the synthesis involved the N-alkylation of Wang resin bound N-(4-tert-butyloxy-phenethyl)-glycine with D or L Boc-serine-beta-lactone (the Vederas lactone). The resulting carboxylic acid was then coupled to a variety of monosubstituted benzylamine derivatives using benzotriazol-1-yloxy-tris(dimethyl-amino)phosphonium hexafluorophosphate (the BOP reagent) to yield a series of resin bound tertiary amides. Treatment with 5% H2O in TFA resulted in the facile cleavage, deprotection, and cyclization of this linear precursor to yield a series of piperazinones (compounds 1-8).     

A novel polymer supported approach to nucleoside modification

Polymer-supported O(6)-(benzotriazol-1-yl)inosine derivatives (Pol-I and Pol-dI) have been synthesized reasonably effectively via reaction of nucleoside phosphonium salts with polymer-linked HOBt (Pol-HOBt). In constast to solution chemistry, use of polymer-supported BOP (Pol-BOP) did not lead to efficient nucleoside loading. Presence of the nucleosides on the support could be readily detected by MAS NMR. Exposure of the polymer-supported nucleosides, Pol-I and Pol-dI, to alcohol, phenol, thiol and amine nucleophiles caused cleavage from the support leading directly to the C-6 modified nucleoside analogues. To our knowledge, these are the first examples of the application of such technology for nucleoside modification. Where possible, results of reactions with the polymer-supported nucleosides are compared to those from solution chemistry, providing insight into the differences between the two techniques. These new polymer-supported nucleosides can be conveniently utilized for diversity-oriented synthesis.     

Preparation of chlorofluoromethylene olefins via phosphine dechlorination of dichlorofluoromethyltris?dimethylamino?phosphonium chloride

The reaction of dichlorofluoromethyltris?dimethylamino?phosphonium chloride with tertiary phosphines provides a convenient preparation of the chlorofluoromethylenetris?dimethylamino?phosphonium ylide. This ylide provides reasonable yields of chlorofluoroolefins from aldehydes, activated ketones, non-activated ketones, and activated esters. The mechanism of phosphonium salt formation was shown to involve positive chlorine abstraction from CFCl₃ by (Me₂N)₃P followed by recombination of the intermediate ion pair. Dechlorination of the resulting dichlorofluoromethyltris?dimethylamino?phosphonium chloride by triphenylphosphine gave an olefinating solution of reasonable stability. In contrast, the solution obtained by dechlorination of the phosphonium salt by tris?dimethylamino?-phosphine showed no stability.     

Palladium-catalyzed thiocarbonylation of iodoarenes with thiols in phosphonium salt ionic liquids

Trihexyl(tetradecyl)phosphonium hexafluorophosphate, a phosphonium salt ionic liquid (PSIL) is a particularly effective general reaction media for the Pd-catalyzed carbonylation reaction of iodoarenes and thiols to form thioesters. Recycling of the ionic liquid containing active Pd-catalyst was also demonstrated.     

Synthesis of protoheme IX derivatives with a covalently linked proximal base and their human serum albumin hybrids as artificial hemoprotein

The simple one-pot reaction of protoporphyrin IX and omega-(N-imidazolyl)alkylamine or O-methyl-L-histidyl-glycine with benzotriazol-1-yl-oxytris(dimethylamino)phosphonium hexafluorophosphate at room temperature produced a series of protoporphyrin IX species with a covalently linked proximal base at the propionate side-chain. The central iron was inserted by the general FeCl2 method, converting the free-base porphyrins to the corresponding protoheme IX derivatives. Mesoporphyrin IX and diacetyldeuteroporphyrin IX analogues were also prepared by the same procedure. The Fe(II) complexes formed dioxygen (O2) adducts in dimethylformamide at 25 degrees C. Some of them were incorporated into the hydrophobic domain of recombinant human serum albumin (rHSA), providing albumin-heme hybrids (rHSA-heme), which can bind and release O2 in aqueous media (pH 7.3, 25 degrees C). The oxidation process of converting the dioxygenated heme in rHSA to the inactive Fe(III) state obeyed first-order kinetics, indicating that the mu-oxo dimer formation was prevented by the immobilization of heme in the albumin scaffold. The rHSA-heme, in which the histidylglycil tail coordinates to the Fe(II) center, showed the most stable O2 adduct complexes.     

C-nucleosides synthetiques, synthese de C-glycosides precurseurs de C-nucleosides par activation de l''hydroxyle anomere

Some C-glycosides have been synthesized by condensation of malonate anions on to a derivative of D-ribose 1, activated by means of alkoxytris(dimethylamino)phosphonium salt. This one-step reaction afforded mainly the more stable derivatives.     

Synthèse d'une sonde biotinylée à bras clivable allongé pour l'isolement des récepteurs de l'angiotensine II

Synthesis of a Biotinylated Probe with an Extended Cleavable Arm for Angiotensin II Receptors Purification We have synthesized a new biotinylated probe for angiotensin II receptors studies: biotinyl-NH(CH₂)₂? SS? (CH₂)₂? CO-Gly-? Ahx-[Ala¹, Phe(4N₃)⁸]angiotensin II ( 5 ). This molecule can be photoactivated through an arylazido group. ¹H-NMR studies suggest that it adopts an extended conformation which should allow a simultaneous recognition of both streptavidin and hormone receptor. It has a good affinity for receptors (K_d = 1 nM) and hence is a promising tool in their detection (autoradiography, gold-, ferritin-, enzyme-, or fluorescent streptavidin derivatives) and separation (cell sorting, affinity chromatography). It can be monoiodinated (°6) at its tyrosine residue without a significant loss of affinity. Its extended cleavable arm allows an easy recovery of the ‘probe-receptor’ complex from streptavidin. An HPLC monitoring of the synthesis is described, particularly of the segment coupling 1 + 2 in presence of (benzotriazol-1-yloxy)tris(dimethylamino)phosphonium hexafluorophosphate (BOP). This method can be used as well for synthesis of the D -Phe⁸ derivative that has antagonist properties.     

10-(4-联苯基)-2-异丙基噻吨酮硫鎓六氟磷酸的合成与表征

以2-异丙基硫杂蒽酮为原料,乙腈为溶剂经硝酸铈铵氧化得到中间体2-异丙基硫杂蒽酮亚砜,在硫酸存在的条件下,再与联苯反应得到锍盐中间体,最后以醇类和水为混合溶剂,锍盐中间体与六氟磷酸钾进行离子交换得到10- (4-联苯基)-2-异丙基噻吨酮硫鎓六氟磷酸,通过紫外光谱、红外光谱和核磁共振测定,对产物进行了结构确证。     

Improved Synthesis of Phosphoramidite-Protected N6-Methyladenosine via BOP-Mediated SNAr Reaction

N⁶-methyladenosine(m⁶A) is the most abundant modification in mRNA. Studies on proteins that introduce and bind m⁶A require the efficient synthesis of oligonucleotides containing m⁶A. We report an improved five-step synthesis of the m⁶A phosphoramidite starting from inosine, utilising a 1-H-benzotriazol-1-yloxytris(dimethylamino)phosphoniumhexafluorophosphate (BOP)_-mediated S_NAr reaction in the key step. The route manifests a substantial increase in overall yield compared to reported routes, and is useful for the synthesis of phosphoramidites of other adenosine derivatives, such as ethanoadenosine, an RNA analogue of the DNA adduct formed by the important anticancer drug Carmustine.     

A highly facile and efficient one-step synthesis of N6-adenosine and N6-2'-deoxyadenosine derivatives

[reaction: see text] A highly facile and efficient one-step synthesis of N6-adenosine and N6-2'-deoxyadenosine derivatives has been developed. Treatment of inosine or 2'-deoxyinosine, without protection of sugar hydroxyl groups, with alkyl or arylamines, in the presence of BOP and DIPEA in DMF, led to the formation of N6-adenosine and N6-2'-deoxyadenosine derivatives in good to excellent yields. Carcinogenic polyaromatic hydrocarbon (PAH) N6-2'-deoxyadenosine adduct 10 and a rare DNA constituent 11 were thus synthesized directly from 2'-deoxyinosine both in 98% yield.     

Chemistry and stereochemistry of the interaction of the water-soluble phosphine [HO(CH2)3]3P with cinnamaldehyde in aqueous media

To learn more about the bleaching action of pulps by (hydroxymethyl)phosphines, cinnamaldehyde was reacted with tris(3-hydroxypropyl)phosphine, [HO(CH2)3]3P (THPP), in aqueous solution at room temperature under argon. Self-condensation of the aldehyde into two isomeric products, 2-benzyl-5-phenyl-pent-2,4-dienal and 5-phenyl-2-(phenylmethylene)-4-pentenal, is observed; this implies initial nucleophilic attack of the phosphine at the beta-carbon of the alpha,beta-unsaturated aldehyde. Reaction in D2O gives the same products in which all but the phenyl and CHO protons are replaced by deuterons. NMR studies are consistent with carbanion formation and subsequent condensation of two phosphonium-containing aldehyde moieties to generate the products with concomitant elimination of phosphine oxide. In D2O in the presence of HCl, THPP reversibly attacks the aldehyde-C atom to form the (alpha-hydroxy)phosphonium derivative [PhCH=C(H)CH(OD)PR3]Cl (where R=(CH2)3OD), which slowly converts into the deuterated bisphosphonium salt [R3PCH(Ph)CD(H)CH(OD)PR3]Cl2 via the deuterated monophosphonium salt [R3PCH(Ph)CD(H)CHO]Cl. The phosphonium intermediates and phosphonium products in this chemistry, although having up to three chiral carbon centers, are formed with high stereoselectivity just in enantiomeric forms. In acetone-H2O (1:1 v/v), a cross-condensation of cinnamaldehyde with acetone to give 6-phenyl-3,5-hexadien-2-one is promoted by THPP via generation of OH-.     

2-单核和双核茂铁基-1,3-二烷基苯并咪唑盐的合成、结构及性质研究

以2-二茂铁基苯并咪唑(2)为原料,合成了1-甲基-2-二茂铁基-3-乙基苯并咪唑碘盐(4)和六氟磷酸盐(5);甲酰化的2,2-双二茂铁基丙烷(6)与邻苯二胺在甲醇作溶剂,回流,碘催化下反应,得到2-[1’-(2-二茂铁基丙烷-2-基)二茂铁-1-基]苯并咪唑(7),以7为原料合成了1-甲基-2-[1’-(2-二茂铁基丙烷-2-基)二茂铁-1-基]-3-乙基苯并咪唑碘盐(9)和六氟磷酸盐(10).电化学分析表明所得的盐化合物中,与苯并咪唑阳离子直接相连的二茂铁的氧化电位相对2和7均产生了较大正移.对化合物4的单晶结构进行了解析,晶体结构中存在π-π堆积.UV-Vis吸收光谱表明所得盐化合物具有光致电荷迁移现象.DSC-TG(差示扫描量热-热重)测试表明碘盐4对高氯酸铵(AP)热分解有较好催化效果.     

Facile Pd-catalyzed cross-coupling of 2'-deoxyguanosine O6-arylsulfonates with arylboronic acids

[reaction: see text]. The O6-(2-mesitylenesulfonyl) derivative of 2'-deoxyguanosine undergoes a facile palladium-mediated C-C cross-coupling with arylboronic acids. Demonstrating the general applicability of this method, the synthesis of a previously undescribed class of 2-amino-6-arylpurine 2'-deoxynucleosides has been accomplished. The study also describes an evaluation of the O6-(2,4,6-triisopropylphenylsulfonyl) and the O6-(4-toluenesulfonyl) derivatives for the cross-coupling.     

Unusual deoxygenation and reactivity studies related to O6-(benzotriazol-1-yl)inosine derivatives

New and unusual developments related to the chemistry of O6-(benzotriazol-1-yl)inosine derivatives are reported. First, a simple, scalable method for their syntheses via the use of PPh3/I2/HOBt has been developed and has been mechanistically investigated by 31P(1H) NMR. Studies were then conducted into a unique oxygen transfer reaction between O6-(benzotriazol-1-yl)inosine nucleosides and bis(pinacolato)diboron (pinB-Bpin) leading to the formation of C-6 (benzotriazol-1-yl)purine nucleoside derivatives and pinB-O-Bpin. This reaction has been investigated by 11B(1H) NMR and compared to pinB-O-Bpin obtained by oxidation of pinB-Bpin. The structures of the C-6 (benzotriazol-1-yl)purine nucleosides have been unequivocally established via Pd-mediated C-N bond formation between bromo purine nucleosides and 1H-benzotriazole. Finally, short and extremely simple synthesis of 1,N6-ethano- and 1,N6-propano-2'-deoxyadenosine are reported in order to demonstrate the synthetic versatility of the O6-(benzotriazol-1-yl)inosine nucleoside derivatives for the assembly of relatively complex compounds.     

Enantioselective hydrogenation of alkenes with iridium-PHOX catalysts: a kinetic study of anion effects

In the asymmetric hydrogenation of unfunctionalized olefins with cationic iridium-PHOX catalysts, the reaction kinetics and, as a consequence, catalyst activity and productivity depend heavily on the counterion. A strong decrease in the reaction rate is observed in the series [Al[OC(CF3)3]4]- >BArF- >[B(C6F5)4]- >PF6- >BF4- >CF3SO3-. With the first two anions, high rates, turnover frequencies (TOF >5000 h(-1) at 4 degrees C), and turnover numbers (TONs) of 2000-5000 are routinely achieved. The hexafluorophosphate salt reacts with lower rates, although they are still respectable; however, this salt suffers from deactivation during the reaction and extreme water-sensitivity, especially at low catalyst loading. Triflate and tetrafluoroborate almost completely inhibit the catalyst. In contrast to the hexafluorophosphate salt, catalysts with [Al[OC(CF3)3]4]-, BArF-, and [B(C6F5)4]- as counterions do not lose activity during the reaction and remain active, even after all the substrate has been consumed. In addition they are much less sensitive to moisture and, in general, rigorous exclusion of water and oxygen is not necessary. A first-order rate dependence on the hydrogen pressure was determined for the BArF- and the PF6- salts. At low catalyst loading, the rate dependence on catalyst concentration was also first order. The rate dependence on the alkene concentration was strikingly different for the two salts. While the reaction rate observed for the BArF- salt slightly decreased with increasing alkene concentration (rate order -0.2), a rate order of approximately 1 was determined for the corresponding hexafluorophosphate at low alkene concentrations.