Direct observation of chiral metal-organic complexes assembled on a Cu100 surface

We report single-molecule level STM observations of chiral complexes generated by the assembly of achiral components at a metal surface. Following co-deposition of iron atoms and 1,3,5-tricarboxylic benzoic acid (trimesic acid, TMA) on Cu(100) in ultrahigh vaccum, TMA molecules react with the metal centers, and metal-ligand interactions stabilize R and S chiral complexes which are clearly distinguished by STM.     

Direct STM investigation of cinchona alkaloid adsorption on Cu(III)

Scanning tunneling microscopy (STM) combined with cyclic voltammetry has been employed to investigate the adsorption of cinchonine on Cu(111). Similar to cinchonidine, cinchonine forms a long-range ordered adlayer with (4 x 4) symmetry on the substrate. The structural details on molecular adsorption were obtained by high-resolution STM images. On the basis of the previous results and obtained STM images, the quinoline ring is proposed to lie parallel to Cu(111) and serve as an anchoring group. The chiral quinuclidine moiety extends out of the surface to facilitate the interaction with the prochiral reactants.     

Effect of plant-based phenol derivatives on the formation of Cu and Ag nanoparticles

The complexes formed on the reaction of various metal ions viz., Cu(II) and Cu(I) with phenol derivatives viz. catechol, chlorogenic acid (CGA), hydroquinone and n-propyl gallate (nPG) were established by UV-visible spectroscopy. The metal/ligand complexing ratio and complexation constants have been determined. Further, we showed that nanoparticles of Cu can be prepared from metal-phenol complexes in the presence of a protein (gelatin) by γ-irradiation showing that the reduction is metal ion centered. Formation of Ag nanoparticles was also observed on photo-irradiation with xenon lamp in the presence of dihydroxy benzene. The Ag and Cu nanoparticles were characterized by transmission electron microscopy (TEM) and UV-visible absorption spectroscopy. TEM technique showed the presence of Cu and Ag nanoparticles with average size of 20 and 30 nm, respectively.     

The initial growth behavior of perylene on Cu(100)

Using scanning tunneling microscopy (STM) together with density functional theory (DFT) the growth behavior of perylene on the Cu(100) substrate has been investigated. As revealed by STM images, perylene molecules prefer to adopt lying configuration with their molecular plane parallel to the substrate, and two symmetrically equivalent ordered domains were observed. DFT calculations show that perylene molecule prefers to adsorb on the top site of substrate Cu atoms with its long molecular axis aligning along the [011] or [01-1] azimuth of the substrate which is the most stable adsorption geometry according to its highest binding energy. Consequently, two adsorption structures of c(8×4) and c(8×6), each containing two perylene molecules per unit cell, are proposed based on our STM images. The growth mechanism for ordered perylene domains on Cu(100) can be attributed to the balance between weak adsorbate-adsorbate interaction and comparable adsorbate-substrate interaction.     

Fine-tuning of relative metal-metal distances within highly ordered chiral 2D nanopatterns

The two-dimensional nanopatterning of a series of neutral alkoxy/alkyl-functionalised bis(salicylaldehydato)/bis(aldiminato)copper(II) and -palladium(II) complexes at a liquid/solid (highly oriented pyrolytic graphite, HOPG) interface has been studied by scanning tunnelling microscopy (STM). The relative metal-metal distances were tuned stepwise in two dimensions by ligand design. Exchange of the carbonyl O-atom for NH or N-alkyl units effects different intermolecular interactions such as weak hydrogen bonds and steric effects that determine, together with the van der Waals forces between the alkyl chains, the relative arrangements of the complexes. Further variation of the length and position of the alkoxy side chains as well as the exchange of CuII for PdII affords an absolute fine-tuning of the surface structures. Highly resolved STM images of the resultant highly ordered adlayers allow us to establish detailed models of the molecular 2D arrays and to classify them into three basic chiral pattern types. Homochirality within the individual domains is induced by the highly regular deposition of the prochiral complexes from the same enantiotopic face. In the case of the C12 O-substituted bis(salicylaldiminato) (NH) Cu(II) complex Cu5, a secondary structure occurs as a racemic mixture of two chiral surface species deposited in a distinct alternating order.     

CoPc adsorption on Cu(111): Origin of the C4 to C2 symmetry reduction

The adsorption of phthalocyanines (Pc) to various surfaces has recently been reported to lead to a lowering of symmetry from C4 to C2 in scanning tunneling microscope (STM) images. Possible origins of the reduced symmetry involve the electronic structure or geometric deformation of the molecules. Here, the origin of the reduction is clarified from a comprehensive theoretical study of CoPc adsorbed on the Cu(111) surface along with the experimental STM data. Total energy calculations using different schemes for the exchange-correlation energy and STM simulations are compared against experimental data. We find that the symmetry reduction is only reproduced when van der Waals corrections are included into the formalism. It is caused by a deformation along the two perpendicular molecular axes, one of them coming closer to the surface by around 0.2 A?. An electronic structure analysis reveals (i) the relevance of the CoPc interaction with the Cu(111) surface state and (ii) that intramolecular features in dI/dV maps clearly discriminate a Co-derived state from the rest of the Pc states.     

Theoretical Studies on the Cu-Cu Interaction and Stability of [Cu_a(Ph_2Ppy)_b(CH_3CN)_c]~(a+) (a=1～2,b=1～3,c=0～2)

To study the Cu-Cu interaction and stability of the title complexes,the structures of complexes [Cu(Ph2Ppy)(CH3CN)]+ 1,[Cu(Ph2Ppy)]+ 2,[Cu2(Ph2Ppy)2(CH3CN)2]2+ 3,[Cu2(Ph2Ppy)2(CH3CN)]2+ 4,[Cu2(Ph2Ppy)2]2+ 5 and [Cu2(Ph2Ppy)3(CH3CN)]2+ 6 were calculated by density functional theory PBE0 method,and the following conclusions can be drawn:(1) There is no orbital overlapping between two Cu atoms,indicating no Cu-Cu orbital interaction exists in complexes 3～6.Due to a breakdown of the closed shell configuration of Cu atoms,the weak Cu-Cu interactions result from the 3dCu → 4sCu' charge-transfer in 4～6.The Cu-Cu interaction strength follows 5 6 4,implying that there are stronger Cu-Cu interactions in the complexes with fewer CH3CN or more Ph2Ppy ligands.(2) The calculated interaction energies suggest that the coordination of Cu to Ph2Ppy is stronger than that to CH3CN.In 3～6,there are weaker interactions between Cu and CH3CN or Ph2Ppy in the complexes with more CH3CN or Ph2Ppy ligands.(3) The P-Cu and N-Cu interactions are much stronger than the Cu-Cu interaction,so we mainly attribute the stabilities of the binuclear complexes to the eight-membered rings Cu2P2N2C2.     

Cu(II)-氨基酸-核苷酸三元配合物的合成和表征

合成和表征Na~2[Cu(L-Ala)~2(5'-GMP)].2H~2O、Na~2[Cu(L-Ala)~2(5'-IMP)].6H~2O、Na~2[Cu(L-His)(5'-GMP)Cl~2^2.2H~2O和Na~2[Cu(L-His)(5'-IMP)Cl~2].H~2O四个新的三元配合物, 其中两个L-Ala分子通过羧基O和α-氨基N与Cu(II)成反式配位, 一个L-His分子通过羧基O和咪唑环上的N与Cu(II)配位; 一个5'-GMP或5'-IMP分子嘌呤环上的N(7)与Cu(II)配位; 5'-GMP的磷酸根上可能存在强氢键, 而5'-IMP的磷酸根上不存在强氢键; 在含L-Ala三元配合物中, 5'-GMP的C(6)=0可能参与配位或形成强氢键, 而5'-IMP的C(6)=0不参与配位或形成配位或形成强氢键; 在含L-His三元配合物中, 5'-IMP的C(6)=0的表现则相反。     

Synthesis, physico-chemical and DNA interaction studies of homo- and hetero-trinuclear complexes

Synthesis and characterization of three new trinuclear metal complexes of type Cu3, Cu2Zn and Cu2Ni have been achieved by assembling simple mononuclear complexes, namely 2,2'-bipyridyl 3,4-dihydroxo benzaldehyde copper(II) complex and diethylenetriamine complexes of copper(II), nickel(II) and zinc(II) ions, through the reaction of coordinated ligands. The FAB mass spectra for the complexes show fragmentation pattern in accordance with the molecular formula. The frozen electron paramagnetic resonance (EPR) spectrum of tricopper complex shows two sets of parallel lines with approximately 2:1 ratio. The simulation has been carried out by considering dipolar interaction between the two types of copper ions present in the complex. The trimetallic complexes, Cu3, Cu2Ni and Cu2Zn show strong intercalation type of interaction with Calf thymus DNA in 0.02 mol L(-1) of phosphate buffer containing 60 mmol sodium chloride at pH 7.0 at room temperature. The binding constant is found to be in the order Cu3相似文献   

Bond dissociation energies and structures of CuNO(+) and Cu(NO)(2)(+)

The bond dissociation energies of CuNO(+), Cu(NO)(2)(+), and CuAr(+) are determined by means of guided ion beam mass spectrometry and quantum chemical calculations. From the experiment, the values D(0)(Cu(+)-NO) = 1.13 +/- 0.05, D(0)(ONCu(+)-NO) = 1.12 +/- 0.06, D(0)(Cu(+)-Ar) = 0.50 +/- 0.07, and D(0)(Cu(+)-Xe) = 1.02 +/- 0.06 eV are obtained. The computational approaches corroborate these results and provide additional structural data. The relative values of D(0)(Cu(+)-NO) and D(0)(Cu(+)-Xe) are consistent with the approximately thermoneutral formation of CuXe(+) upon interacting CuNO(+) with xenon. The sequential bond dissociation energies of Cu(NO)(2)(+) exhibit a trend similar to those of other Cu(I) complexes described in the literature. Although metathesis of nitric oxide to N(2) and O(2) is of considerable interest, no evidence for N-N- or O-O-bond formations in Cu(NO)(n)(+) ions (with n up to 3) is obtained within the energy range studied experimentally.     

Experimental and computational study of HXeY...HX complexes (X, Y = Cl and Br): an example of exceptionally large complexation effect

The complexes of xenon hydrides HXeY (Y = Cl and Br) with hydrogen halides HX (X = Cl and Br) have been studied both computationally and experimentally in a xenon matrix. The experiments revealed three new complexes: HXeBr...HBr, HXeBr...HCl, and HXeCl...HCl. The experimental assignments were done on the basis of the strong H-Xe stretching absorption of HXeY (Y = Cl and Br) molecules and supported by theoretical results. We experimentally obtained monomer-to-complex blue-shifts of this vibrational mode for all the studied systems (up to approximately 150 cm (-1)). The electronic structure calculations revealed three local structures for each HNgY...HX complexes and their computed interaction energies varied between -460 and -2800 cm (-1). The computational estimates of the vibrational shifts were in agreement with the experimental values. We also found possible experimental absorption belonging to HXeBr...(HBr) 2 trimer and its vibrational shift (+245 cm (-1)) is similar to the computational estimate of a cyclic ternary complex (+252 cm (-1)).     

Characterization of the metal-organic framework compound Cu3(benzene 1,3,5-tricarboxylate)2 by means of 129Xe nuclear magnetic and electron paramagnetic resonance spectroscopy

129Xe NMR measurements of adsorbed xenon are shown for the first time to be a suitable tool to characterize the porosity and the properties of the metal-organic framework Cu3(BTC)2(H2O)3 (BTC = benzene 1,3,5-tricarboxylate). The NMR experiments are performed at room temperature and over a wide range of xenon pressure and on two different synthesized Cu3(BTC)2 samples. 129Xe NMR results reveal that in dependence on the kind of the synthesis pathway either one or two signals are observed which can be attributed to two kinds of fast exchange of xenon atoms in two pores with different pore sizes. Coadsorption experiments of xenon and ethylene demonstrate that the xenon atoms prefer to fill the greater pores of the material because the smaller pores are occupied with residual molecules from the synthesis procedure and additionally adsorbed ethylene. Besides the NMR experiments a series of electron paramagnetic resonance (EPR) measurements are performed to estimate the state of copper having a strong influence on the chemical shift of the adsorbed xenon. The EPR experiments demonstrate that spin exchange between the interconnected copper dimers is taking place across the BTC linker molecules in the Cu3(BTC)2 framework.     

Theoretical study on the DNA interaction properties of copper(II) complexes

Theoretical studies on DNA-cleavage and DNA-binding properties of a series of Cu(II) complexes [Cu(bimda)(diimine)] 1–5 have been carried out by density functional theory (DFT). The optimized structures of Cu(II) complexes were docked into parallel, antiparallel and mixed G-quadruplexes, with which the binding energies of complexes 1–5 were obtained. The cytotoxicities of these complexes can be predicted preliminarily by the binding energies. To explore the energy changes of Cu(II) complexes in duplex DNA, the optimized structures of these complexes were docked into the duplex DNA, and the obtained docking models were further optimized using QM/MM method. The DNA-cleavage abilities of complexes 1–5 can be predicted accurately and explained reasonably by the computed intra-molecular reorganization energies of these complexes. This work reported here has implications for the understanding of the interaction Cu(II) complexes with the DNA, which might be helpful for the future directing the design of novel anticancer Cu(II) complexes.     

TERNARY Cu(Ⅱ)(ATP)AND HETEROAROMATIC N BASE COMPLEXES IN SOLUTION:STABILITY CONSTANTS AND ANTITUMOR MECHANISM EXPLORATION

The stability of the complexes of four pyridine-like ligandswith Cu(ATP)~(2-) was studied and by comparing the stability constants of theternary complexes[Cu(ATP)L]~(2-) with those of the binary complexes[CuL]~(2+),astacking interaction between the pyridine ring and the purine ring of ATP isindicated.It is possible to interpret the antitumor mechanism of[Pt(NH_3)_8(N-het)Cl]Cl in terms of this stacking interaction.     

On-line electrogeneration of copper-peptide complexes in microspray mass spectrometry

The interaction of copper ions with peptides was investigated by electrospray mass spectrometry. Two electrospray micro-emitters were compared, the first one with a platinum electrode using a copper(II) electrolyte solution containing a peptide sample, and the second one with a sacrificial copper anode in a water/methanol solution containing only a peptide (i.e., angiotensin III, bradykinin, or Leu-enkephalin). The former yielded mainly Cu(2+) complexes either with histidine residues or with the peptide backbone (Cu(+) complexes can be also formed due to gas-phase reactions), whereas the latter can generate a mixture of both Cu(+) and Cu(2+) aqueous complexes that yield different complexation patterns. This study shows that electrospray emitters with soluble copper anodes enable the study of Cu(I)-peptide complexes in solution.     

Interaction of Cu-dipeptide complexes with Calf Thymus DNA and antiproliferative activity of [Cu(ala-phe)] in osteosarcoma-derived cells

In this work the study of Calf Thymus DNA interaction with several Cu(l-dipeptide) complexes was reported. The binding stoichiometry (Cu(mmol)/DNAmol base) was determined and in an attempt to clarify the binding mode, EPR and CD experiments were performed. All the studied complexes interacted with DNA, in a more selective way than [Cu(H₂O)₆]²⁺, being the [Cu(ala-phe)] the complex with the highest interaction. The EPR experiments suggested that the monomeric species formed in solution were coordinated through a nitrogen atom of the DNA bases (inner-sphere binding) and the CD studies showed structural changes upon the DNA–complex interaction. Besides, the ratio Cu(mmol)/DNAmol base obtained by the binding stoichiometry experiments was close to that found by EPR and CD determinations. The effect on cell proliferation determined by the crystal violet bioassay on UMR106 rat osteosarcoma-derived cells showed that the [Cu(ala-phe)] complex exerted an antiproliferative action against this tumor line.     

Tailoring the Self-assembly of Melamine on Au (111) via Doping with Cu Atoms

The doping effect of Cu on the self-assembly film of melamine on an Au(111) surface has been investigated with scanning tunneling microscopy (STM). The evaporated Cu adatoms occupy the positions underneath the amino groups and change the hydrogen bonding pattern between the melamine molecules. Accordingly, the self-assembly structure has changed stepwise from a well-defined honeycomb into a track-like and then a triangular structure depending on the amount of Cu adatoms. The interaction between Cu adatom and melamine is moderate thus the Cu adatoms can be released upon mild heating to around 100℃. These findings are different from previous observations of either the coordination assembly or the physically trapped metal adatoms.     

Neutral Nickel(II) and Copper(II) Tetraazamacrocyclic Complexes as Molecular Rods Attached to Gold Electrodes

New dithiolated derivatives of neutral Cu^II and Ni^II tetraazamacrocyclic complexes have been synthesized and characterized by spectroscopic and diffractional methods. These rod‐shaped molecules were assembled in monocomponent and mixed monolayers on gold electrodes. In the mixed monolayers, the active molecules were embedded in a hexanethiol matrix. The dithiolated complexes are oriented perpendicularly to the electrode, and reveal faster kinetics of electron transfer than those assembled in a single‐component monolayer. They appear as protrusions, which are easily addressed by using the STM method. In the presence of a suitable electron acceptor in the solution, the donor properties of the anchored Cu complex were weakened, which revealed donor–acceptor interactions with the monolayer. The peak position in the voltammogram indicates a stronger interaction of the solution‐based acceptor with the reduced Cu^II form than with the Cu^III complex. This suggests the possibility of switching the association on or off by applying an appropriate potential.     

Synthesis and Cu(II) coordination chemistry of a patellamide derivative: consequences of the change from the natural thiazole/oxazoline to the artificial imidazole heterocycles

The synthesis and Cu(II) coordination chemistry of the cyclic pseudo-octapeptide H(4)pat(1), a dimethyl-imidazole analogue of naturally occurring cyclic peptides (patellamide A-F, ascidiacyclamide) is reported. Substitution of the oxazoline and thiazole heterocycles by dimethyl-imidazoles leads to a slightly different structure of the macrocycle in the solid state. The Cu(II) coordination chemistry of H(4)pat(1), monitored with high-resolution electrospray mass spectrometry, spectrophotometric titrations, and EPR spectroscopy, revealed the presence of both mono- and dinuclear Cu(II) complexes. The dimethyl-imidazole analogue shows a high cooperativity in Cu(II) coordination, that is, the preferred formation of dinuclear complexes. The dinuclear unbridged Cu(II) complexes of H(4)pat(1) have unusual EPR features, reminiscent of those of patellamide D: the dipole-dipole interaction of the Cu(II) centers is negligible due to the "magic angle" orientation of the two Cu(II) ions. Density functional theory calculations (DFT) are used to model the structures of the Cu(II) complexes, and the structural assignments from the spectroscopic investigations are supported by the optimized and by X-ray structures of the metal-free macrocycle and dinuclear Cu(II) complexes of H(4)pat(1). The rigidity of the dimethyl-imidazole rings has a significant effect on the structures of the metal-free ligands and Cu(II) complexes and therefore changes the properties of these compounds. This may explain why Nature has chosen the thiazole-oxazoline combination for the patellamides and ascidiacyclamide.     

Dipole driven bonding schemes of quinonoid zwitterions on surfaces

The permanent dipole of quinonoid zwitterions changes significantly when the molecules adsorb on Ag(111) and Cu(111) surfaces. STM reveals that sub-monolayers of adsorbed molecules can exhibit parallel dipole alignment on Ag(111), in strong contrast with the antiparallel ordering prevailing in the crystalline state and retrieved on Cu(111) surfaces, which minimizes the dipoles electrostatic interaction energy. DFT shows that the rearrangement of electron density upon adsorption is a result of donation from the molecular HOMO to the surface, and back donation to the LUMO with a concomitant charge transfer that effectively reduces the overall charge dipole.