Chemical transformations of tetracyclo[3.3.1.1<Superscript>3,7</Superscript>.0<Superscript>1,3</Superscript>]decane (1,3-dehydroadamantane): III. Reactions of 1,3-dehydroadamantane with isothiocyanates

1,3-Dehydroadamantane reacted with phenyl isothiocyanate at 120–130°C under solvent-free conditions to give 4-(adamantan-1-yl)phenyl isothiocyanate. The selectivity of its reactions with benzyl and phenethyl isothiocyanates in which the isothiocyanato group is separated from the benzene ring by methylene or ethylene bridge was lower, and adamantylation of the para position of the benzene ring was accompanied by adamantylation of the methylene groups.     

Fabrication and sensing property for conducting polymer nanowire-based biosensor for detection of immunoglobulin G

Conducting polymers are excellent sensing materials in the design of bioanalytical sensors because of their electronic conductivity, low energy optical transitions, biocompatibility, and room temperature operation. Among them, Polypyrrole (Ppy) is one of the most extensively used conducting polymers because of a number of properties such as redox activity, rapid electron transfer, and ability to link a variety of biomolecules to pyrrole groups by chemical treatment. In this study, Ppy nanowires were synthesized by an electrospinning method. The nanowires were prepared from a solution mixture of Ppy and poly(ethylene oxide). The method of detection in such a device is based on the selective binding of antigen onto an antibody that is covalently attached to the nanowires. Thus, anti-IgG was immobilized on Ppy nanowires using an EDC {[N-(3-dimethyl aminopropyl)-N₂-ethylcarbodiimide hydrochloride]}-NHS(N-hydrosuccinimide) modified technique. Fluorescence images of BSA–FITC (fluorescein isothiocyanate labeling of bovine serum albumin) conjugation demonstrated that antibody was functionalized on the Ppy nanowires without non-specific binding and facilitated selective detection of antigen. Current–voltage (I–V) characterization was used to monitor the change in the conductivity of nanowires while the specific binding interaction occurred. These results of electrical properties enable Ppy nanowire-based biosensors to detect biomolecules in real-time.     

Reaction of 2-chloromethylphenols with enaminones

The reaction of o-(chloromethyl)phenols with enamino ketones afforded a series of 3-acyl- and 3-formyl-4H-chromenes as a result of cascade transformation including [4 + 2]-cycloaddition of enamino ketone to o-quinone methide generated in situ and subsequent elimination of secondary amine.     

Unusual layer structure in an ion-paired compound containing tetra(isothiocyanate) cobalt(II) dianion and 4-nitrobenzylpyridinium: Crystal structure and magnetic properties

A new ion-paired compound [4NO₂BzPy]₂[Co(NCS)₄] (1) ([4NO₂BzPy]⁺ = 1-(4′-nitrobenzyl)pyridinium, NCS^? = isothiocyanate) is synthesized and characterized by elemental analysis, IR and UV-Vis spectra, ESI-MS and single crystal X-ray diffraction. Compound 1 is orthorhombic, space group Pbcn, with a = 13.188(2) Å, b = 8.458(1) Å, c = 29.281(4) Å, V = 3266.2(7) ų, D _calc = 1.468 g/cm³, Z = 4, F(000) = 1476, R ₁ = 0.0332. The [Co(NCS)₄]_2? anions form an unusual layer structure by S…N and S…Co interactions, while the [4NO₂BzPy]⁺ cations stack into a 1D column by the p…π stacking interaction in the solid state of 1. A magnetic measurement in the range 2–300 K shows a weak antiferromagnetic exchange with θ = ?2.42 K in 1.     

Thermal,acid-catalyzed,and photolytic transformations of spirocyclic 3H-pyrazoles formed by reactions of methyl,phenyl, and p-tolyl phenylethynyl sulfones with 9-diazofluorene

Methyl, phenyl, and p-tolyl phenylethynyl sulfones react with 9-diazofluorene in diethyl ether at 20°C to give 1,3-dipolar cycloaddition products according to von Auwers’ rule, the corresponding spirocyclic 3H-pyrazoles. The spiro adducts undergo isomerization into 5-R-sulfonyl-3-phenylpyrazolo[1,5-f]phenanthridines on heating in boiling toluene for 2 h; heating of the same pyrazoles in boiling benzene, acetonitrile, or ethanol leads to mixtures of 5-R-sulfonyl-3-phenylpyrazolo[1,5-f]phenanthridines and 3-R-sulfonyl-3a-phenyl-3aH-dibenzo[e,g]indazoles, the latter prevailing. The indazoles are kinetically controlled thermolysis products which are quantitatively converted into phenanthridines on heating in toluene. Sulfonyl-substituted spirocyclic 3H-pyrazoles and indazoles in glacial acetic acid at 20°C in the presence of a catalytic amount of sulfuric acid are transformed into 3a-phenyl-2H-dibenzo[e,g]indazol-3(3aH)-one. Under analogous conditions, sulfonyl-substituted phenanhtridines give rise to 3-phenyl-1H-dibenzo[e,g]indazole. Photolysis of spirocyclic 3H-pyrazoles yields mixtures of sulfonylcyclopropenes and 2H-cyclopenta[j,k]fluorenes.     

Lower rim substituted p-tert-butyl calix[4]arene; Part 14. Synthesis, structures and binding studies of calix[4]arene thioamides

A number of p-tert-butylcalix[4]arene thioamides were synthesized and characterized by ¹H-NMR and elemental analysis. Compounds 1–5 are O-substituted derivatives with –CH₂–C(=S)–N–X groups, where NX = morpholidyl, NEt₂, NHC₂H₄Ph, NHCH₂Ph and NHEt, respectively. The X-ray structures of the ligands 1, 3, 5 and of the complex 3·Pb(ClO₄)₂, (compound 6), are presented and their slightly distorted cone conformation is established. The influence of the nature of the thioamide functions (secondary or tertiary) on the extractability of some selected metal cations was investigated. Whereas all these calixarenes show the highest extraction level for Ag⁺, tertiary thioamides are more efficient extractants for Pb²⁺ than secondary thioamides.     

Graft copolymers via combination of cationic polymerization and atom transfer radical polymerization and their phase separation into spherical/worm-like nanostructures

Poly(p-chloromethyl styrene)-graft-poly(methyl methacrylate) (PCMS-g-PMMA) and poly(p-chloromethyl styrene)-graft-poly(benzyl methacrylate) (PCMS-g-PBzMA) graft copolymers with asymmetric branches are synthesized via the combination of cationic polymerization and atom transfer radical polymerization (ATRP). The process involves first, the preparation of poly(p-chloromethyl styrene) (PCMS-CH₂Cl) macroinitiator without any cross-linking or side reactions through pendant benzyl chloride (?CH₂Cl) functionality by cationic polymerization using a simple FeCl₃-based initiating system at 25 °C. The as-synthesized PCMS-CH₂Cl, without any transformation, is then used as the macroinitiator to graft PMMA and PBzMA branches by ATRP to produce PCMS-g-PMMA and PCMS-g-PBzMA graft copolymers of varying compositions with controlled molecular weight and moderately narrow polydispersities (M _w/M _n?≤?1.32). The resulting PCMS₂₁ -g-PMMA₂₃₂ graft copolymer in thin film form phase separates into spherical morphology with an average diameter of 170?±?72 nm. Whereas the PCMS₂₁ -g-PBzMA₁₅₆ graft copolymer gives worm-like nanostructures with an average length of 94 nm and width of 31 nm due to phase separation as visualized through atomic force microscopy. On the other hand, the phase-separated morphology is not very well-defined for other graft copolymers (PCMS₁₁₃ -g-PMMA₂₂₇ and PCMS₁₁₃ -g-PBzMA₁₅₄) thin films containing longer PCMS chains. This approach represents a rapid and convenient route to prepare unique spherical/worm-like polymer nanostructures. Figure

Well-defined poly(p-chloromethyl styrene)-graft-poly(methyl methacrylate) (PCMS-g-PMMA) and poly(p-chloromethyl styrene)-graft-poly(benzyl methacrylate) (PCMS-g-PBzMA) graft copolymers with asymmetric branches are synthesized by the combination of living cationic polymerization and atom transfer radical polymerization (ATRP). The resulting PCMS₂₁ -g-PMMA₂₃₂ and PCMS₂₁ -g-PBzMA₁₅₆ graft copolymers phase separate into nanostructured spherical and worm-like morphologies, respectively, in thin film form. The phase-separated morphology is not very well-defined for graft copolymers (PCMS₁₁₃ -g-PMMA₂₂₇ and PCMS₁₁₃ -g-PBzMA₁₅₄) thin films containing longer PCMS chains.     

Penning ionization electron spectrometry of hydrogen chloride

An electron spectrometric study has been performed on HCl using metastable helium and neon atoms as well as neon resonance photons. High resolution electron spectra were obtained with two different beam apparatuses for a mixed He(2¹ S, 2³ S) beam, a pure He(2³ S) beam, and, for the first time, state-selected pure Ne(3s ³ P ₂) and pure Ne(3s ³ P ₀) beams, and for NeI resonance photons. For the system He(2³ S)+HCl the vibrational populationsP(υ′) of the formed HCl⁺ (X ²∏ _i , υ′) and HCl⁺ (A ²Ω⁺, υ′) ions are found to differ from the Franck-Condon factors for unperturbed potentials, indicating slight bond stretching in HCl upon He(2³ S) approach. For He(2¹ S)+HCl the vibrational peak shapes and vibrational populations are substantially different from the He(2³ S) case, pointing to an additional, charge exchanged interaction (He⁺+HCl^?) in the entrance channel of the former system. For the first time, we have detected the electrons in both the He(2¹ S)+HCl and He(2³ S)+HCl spectra associated with the major mechanism for the formation of Cl⁺ ions: energy transfer to repulsive HCl** Rydberg states, dissociating toH(1s) and autoionizing Cl**(¹ D ₂ nl) atoms. For both Ne(³ P ₂)+HCl and Ne(³ P ₀)+HCl, the populationsP(υ′) of both final molecular states HCl⁺ (X, A) agree closely with the Franck-Condon factors at the average relative collision energyē _coll=55 meV and, for HCl⁺ (A ²Ω⁺), also atē _coll=130 meV.     

On the determination of HCl+ (A,v′) vibrational populations from HCl+ (A→X) fluorescence spectra: direct comparison between photoionization and penning ionization

Using a beam apparatus, we have measured the HCl⁺ (A,v′→X,v″) fluorescence spectra of HCl⁺ (A,v′) ions formed in HeI (58.4 nm), and NeI (73.6 nm) photoionization and, for the first time, in He (2³ S) Penning ionization under single collision conditions with a wavelength bandwidth around 1 nm. In addition, we have studied Ne (3s ³ P _{2, 0}) Penning ionization of HCl at three different collision energies. The procedure and the problems in extracting HCl⁺ (A,v′) vibrational populations from the data are discussed in some detail. Thedirect comparison of photoionization and Penning ionization data allows definitive conclusions to be drawn on the question whether final state interactions in the Penning reaction change the “nascent” vibrational population (determined by electron spectrometry); for He (2³ S)+HCl, such changes are shown to be absent within the experimental uncertainty (<±10%). For Ne (3s ³ P _{2, 0})+HCl, the HCl⁺ (A,v′=0, 1) populations are also found to be close to those measured by electron spectrometry and essentially independent of collision energy in the range 34–96 meV. From measurements of the fluorescence intensity as a function of HCl density, we have evidence for a fast loss of HCl⁺ (A,v′) ions in collisions with HCl (rate constant around 5·10^?9 cm³s^?1).     

Analysis of drug interactions with very low density lipoprotein by high-performance affinity chromatography

High-performance affinity chromatography (HPAC) was utilized to examine the binding of very low density lipoprotein (VLDL) with drugs, using R/S-propranolol as a model. These studies indicated that two mechanisms existed for the binding of R- and S-propranolol with VLDL. The first mechanism involved non-saturable partitioning of these drugs with VLDL, which probably occurred with the lipoprotein’s non-polar core. This partitioning was described by overall affinity constants of 1.2 (±0.3)?×?10⁶ M^?1 for R-propranolol and 2.4 (±0.6)?×?10⁶ M^?1 for S-propranolol at pH 7.4 and 37 °C. The second mechanism occurred through saturable binding by these drugs at fixed sites on VLDL, such as represented by apolipoproteins on the surface of the lipoprotein. The association equilibrium constants for this saturable binding at 37 °C were 7.0 (±2.3)?×?10⁴ M^?1 for R-propranolol and 9.6 (±2.2)?×?10⁴ M^?1 for S-propranolol. Comparable results were obtained at 20 and 27 °C for the propranolol enantiomers. This work provided fundamental information on the processes involved in the binding of R- and S-propranolol to VLDL, while also illustrating how HPAC can be used to evaluate relatively complex interactions between agents such as VLDL and drugs or other solutes.     

The Prognostic Value of Histidine-Rich Glycoprotein RNA in Breast Tissue Using Unmodified Gold Nanoparticles Assay

The aim of is this study is to explore the role of tissue histidine-rich glycoprotein (HRG) RNA as a promising clinically useful biomarker for breast cancer patients prognosis using nanogold assay. Expression of the HRG RNA was assessed by gold nanoparticles and conventional RT-PCR after purification by magnetic nanoparticles in breast tissue samples. The study included 120 patients, 60 of which were histologically proven breast carcinoma cases, 30 had benign breast lesions and 30 were healthy individuals who had undergone reductive plastic surgery. ER, PR and HER2 status were also investigated. The prognostic significance of tissue HRG RNA expression in breast cancer was explored. The magnetic nanoparticles coated with specific thiol modified oligonucleotide probe were used successfully in purification of HRG RNA from breast tissue total RNAs with satisfactory yield. The developed HRG AuNPs assay had a sensitivity and a specificity of 90 %, and a detection limit of 1.5 nmol/l. The concordance rate between the HRG AuNPs assay with RT-PCR after RNA purification using magnetic nanoparticles was 93.3 %. The median follow-up period was 60 months. Among traditional prognostic biomarkers, HRG was a significant independent prognostic marker in relapse-free survival (RFS). HRG RNA is an independent prognostic marker for breast cancer and can be detected using gold NPs assay, which is rapid, sensitive, specific, inexpensive to extend the value for breast cancer prognosis.     

General trends in reaction of <Emphasis Type="Italic">N</Emphasis>-aryl-3-oxobutanethioamides with 2-aminoazoles(azines)

Reaction products obtained from N-aryl-3-oxobutanethioamides and 2-aminoazoles(azines) are derivatives of (arylamino)pyrimidines and pyrimidinethiones. The ratio of the products depends on the basicity of 1,3-binucleophiles, acidity of the medium, and the character of substituents in the phenyl ring of initial thioamides.     

Bromo dimethyl sulfoxide osmium(II) complexes. Molecular structure of cis,fac-[OsBr2(dmso-S)3(dmso-O)]

Bromo dimethyl sulfoxide osmium(II) complexes were synthesized: trans-[OsBr₂(dmso-S)₄] (1) was obtained by the reaction of K₂[OsBr₆] with DMSO in the presence of SnBr₂ at 100°C and cis,fac-[OsBr₂(dmso-S)₃(dmso-O)] (2) was prepared by thermal isomerization of 1 in a DMSO solution at 150°C. The coordination mode of DMSO molecules was determined by IR and ¹H and ¹³C NMR spectroscopy. X-ray diffraction analysis showed that compound 2 crystallizes in the monoclinic system, space group P2₁/n; a = 8.4711(5) Å, b = 27.7876(15) Å, c = 8.5569(5) Å, β = 115.7110(10)°; Z = 4. The coordination polyhedron of osmium is a distorted octahedron; the osmium environment is formed by two cis-arranged bromine atoms and three fac-S-coordinated and one O-coordinated DMSO molecules. The interconversion of complexes in solutions was studied by UV/Vis and ¹H and ¹³C NMR spectroscopy. In chloroform and DMSO, complex 2 isomerizes to cis-[OsBr₂(dmso-S)₄] and (in the light) to 1. The complexes trans-[OsX₂(dmso-d₆)₄], where X = Cl, Br, were isolated from DMSO-d ₆ and characterized by the IR spectra.     

Synthesis and reactions of the thioamide derivatives of methyl vinyl ketone

The reaction of isothiocyanates with in situ generated carbanions of α,β‐unsaturated ketones yielded α,β‐unsaturated keto thioamides which in the reaction with acids or bases cyclized to give 2,6‐disubstituted thiopyran‐4‐ones and in the reaction with α‐bromoesters gave thiazolidin‐4‐one derivatives. The thiopyran‐4‐ones reacted with α,β‐unsaturated aldehydes to yield tetrahydrothiopyran[2,3‐b]pyridin‐4‐ones, while thioanilides were formed in the reaction with phenyl isothiocyanate.     

Multiplex genotyping of KRAS point mutations in tumor cell DNA by allele-specific real-time PCR on a centrifugal microfluidic disk segment

Point Mutations on the Kirsten rat sarcoma viral oncogene homolog (KRAS) have been identified as an important predictive biomarker for response to cancer therapy targeting the epidermal growth factor receptor. KRAS mutations are prevalent in up to 40 % of all colorectal carcinomas, and routinely conducted KRAS genotyping is becoming mandatory to predict therapy success and to reduce therapy costs. We report a low-cost, disposable and ready-to-use centrifugal microfluidic cartridge (termed GeneSlice) containing preloaded primers and probes. The GeneSlice cartridge enables the parallel detection of the seven most relevant KRAS point mutations by allele-specific real-time PCR. It represents a cost effective alternative to dideoxy-sequencing with a faster time-to-result (~ 2 h versus up to 20 h in case of dd-sequencing). Microfluidic processing of the GeneSlice along with allele-specific amplification and real-time detection are conducted in a slightly modified, commercially available PCR thermocycler. Intra-chip standard deviation of C_q values on the GeneSlices is negligible (GeneSlice 1: C_q,std.dev. = 0.13; GeneSlice 2: C_q,std.dev?=?0.26). In 23 of 24 experiments, the data for genotyping 6 cancer cell lines (n?=?4 per cell line) agreed with dd-sequencing. Additionally, DNA derived from microdissected formalin-fixed and paraffin embedded colorectal carcinomas of two cases was genotyped correctly and reproducibly (n?=?3 per patient; one GeneSlice excluded from evaluation). The GeneSlice therefore clearly demonstrated the potential to become a valuable tool for routine diagnostics of KRAS mutations by reducing costs and hands-on time. Figure

Photograph of a centrifugal microfluidic cartridge “GeneSlice” for multiplex genotyping of KRAS point mutations from tumor cell DNA by allele-specific real-time PCR. Information about the mutation status is required to predict success of state-of-the-art cancer therapy with antibodies     

Ultrasensitive detection and identification of BRAF V600 mutations in fresh frozen,FFPE, and plasma samples of melanoma patients by E-ice-COLD-PCR

A number of molecular diagnostic methods have been developed for the detection and identification of mutations in tumor samples, which are important for the choice of treatment in the context of personalized medicine. For the treatment of metastatic melanoma, Vemurafenib is recommended for patients with BRAF V600 activating mutations. However, the different assays developed to date for the detection of these mutations lack sensitivity or specificity or do not allow a sequencing-based identification or validation of the mutation. Recently, enhanced improved and complete enrichment co-amplification at lower denaturation temperature-polymerase chain reaction (E-ice-COLD-PCR) has been developed as a sensitive method for the detection and identification of mutations in KRAS codons 12/13. Here, we present the first E-ice-COLD-PCR assay for the detection and identification of BRAF codon 600 mutations, which has a large dynamic range, as 25 pg to 25 ng can be used as DNA input without any reduction in mutation enrichment efficiency, and which can detect down to 0.01 % of mutated alleles in a wild-type background. The assay has been validated on fresh frozen, formalin-fixed paraffin-embedded (FFPE), and plasma samples of melanoma patients and has allowed the detection and identification of BRAF mutations present in samples appearing as wild type using standard pyrosequencing, endpoint genotyping, or Sanger sequencing. Thus, the BRAF V600 E-ice-COLD-PCR assay is currently one of the most powerful molecular diagnostic tools for the ultrasensitive detection and identification of BRAF codon 600 mutations.     

Efficient Production of Native Lunasin with Correct N-terminal Processing by Using the pH-Induced Self-Cleavable Ssp DnaB Mini-intein System in Escherichia coli

To develop an efficient and cost-effective approach for the production of small preventive peptide lunasin with correct natural N terminus, a synthetic gene was designed by OPTIMIZER & Gene Designer and cloned into pTWIN1 vector at SapI and PstI sites. Thus, lunasin was N-terminally fused to the pH-induced self-cleavable Ssp DnaB mini-intein linked to a chitin binding domain (CBD) with no extra residues. The resultant fusion protein was highly expressed by lactose induction in Escherichia coli BL21 (DE3) in a 7-l bioreactor and bound to a chitin affinity column. After washing the impurities, the Ssp DnaB intein mediated on-column self-cleavage was easily triggered by shifting pH and temperature to allow the native lunasin released. The final purified lunasin yielded up to 75 mg/l medium. Tricine/SDS-PAGE and matrix-assisted laser desorption time-of-flight (MALDI-TOF)/mass spectrometry (MS) verified the structural authenticity of the product, implying the correct cleavage at the junction between Ssp DnaB intein and lunasin. MTT assay confirmed its potent proliferation inhibitory activity to human cancer cells HCT-116 and MDA-MB-231; however, no cytotoxicity to normal human lens epithelial cell SRA01/04 and hepatoma HepG2. Taken together, we provide a novel strategy to produce recombinant native lunasin with correct N-terminal processing by using the pH-induced self-cleavable Ssp DnaB mini-intein.     

Preparation of Cu (II)/PEI–QPEI/SiO2 nanopowder as antibacterial material

The silica nanoparticles were prepared by the sol–gel process, and then twice modified and grafted by polyethylenimine (PEI) on their surface. After quaternary ammonium reaction and chelated copper reaction, the PEI/SiO₂, QPEI/SiO₂, PEI–QPEI/SiO₂ and Cu (II)/PEI–QPEI/SiO₂ nanopowders were obtained in turn. The morphology and structure of the products were characterized through SEM, EDX, HRTEM, FTIR and element analysis. At the same time, the antibacterial activity of the products to E. coli and Candida were evaluated through quantification and qualitative ways, e.g. microcalorimetric method and culture dish method. The results suggested that the Cu (II)/PEI–QPEI/SiO₂, a novel three-component functional nanopowder, presented the best antibacterial activity to both E. coli and Candida duo to the synergistic sterilization capability of the ammonium salt and copper ions, compared with other products. It indicated that the Cu (II)/PEI–QPEI/SiO₂ nanopowder could be a novel antibacterial nanomaterial to widely application in preventing and minimizing bacteria of the organism and environment in future.