Quantitative SERRS for DNA sequence analysis

SERRS is an extremely sensitive and selective technique which when applied to the detection of labelled DNA sequences allows detection limits to be obtained which rival, and in most cases are better than, fluorescence. In this tutorial review the conditions are explored which enable the successful detection of DNA using SERRS. The enhancing surface which is used is crucial and in this case suspensions of nanoparticles were the focus as they allow quantitative behaviour to be achieved in systems analogous to current fluorescence based approaches. The aggregation conditions required to obtain SERRS of DNA affect the sensitivity and the reproducibility and we describe the use of spermine as an effective aggregating agent to achieve excellent reproducibility and sensitivity. The nature of the label which is used, be it fluorescent or non-fluorescent, positively or negatively charged, also affects the SERRS response and these conditions are again discussed. Finally, we show how to detect a specific target DNA sequence in a meaningful diagnostic assay using SERRS and how the approaches described previously in the review are vital to the success of such approaches.     

The fluorescence properties of metal complexes of alkyl derivatives of aromatic schiff bases

Seventeen alkylated salicylidene-o-aminophenol derivatives were tested as fluorimetric reagents for aluminium, gallium, indium, scandium and beryllium. The aluminium, gallium and beryllium complexes are intensely fluorescent, and the scandium and indium complexes weakly fluorescent. The fluorescence properties of the aluminium, gallium and beryllium complexes were studied and conditions for the fluorimetric determination of these metals were established. 2-Hydroxy-4-methylaniline-N-2-hydroxy-4-methyl-benzylidene is a good reagent because of the reproducibility and sensitivity of the fluorescence. The optimal ranges for determination are 0.005–3 mg Al/25 ml, 0.1–7 μg Ga/25 ml and 0.02–7 μg Be/25 ml. In all cases, 1:1 metal—ligand complexes are formed. Optimal reaction conditions and interference studies are reported.     

Immunosensor based on fluorescence quenching matrix of the conducting polymer polypyrrole

In this study, the combination of autofluorescent proteins and fluorescence quenching polymers was shown to be a design which can increase the selectivity and sensitivity of immunosensors. With this objective, the conducting polymer polypyrrole (Ppy) was used as a matrix for immobilization of proteins, which enables biological recognition of the analyte, and as a fluorescence quencher, which increases the selectivity of fluorescence-based detection. In this study, bovine leukemia virus proteins gp51 were immobilized within the Ppy matrix and formed a polymeric layer with affinity for antibodies against protein gp51 (anti-gp51). The anti-gp51 antibodies are present at high levels in the blood serum of cattle infected by bovine leukemia virus. Secondary antibodies labeled with horseradish peroxidase (HRP) were used as specific fluorescent probes for detection of a particular target, because the fluorescence of HRP was readily detectable at the required sensitivity. The Ppy was used as fluorescent background, because its fluorescence was almost undetectable when excited by near UV light at 325 nm. Moreover the Ppy quenched the fluorescence of some fluorescent agents including fluorescein-5(6)-isothiocyanate (fluorescein), rhodamine B, and HRP by almost 100% when these fluorescent agents were adsorbed on the surface of Ppy. It is predicted that Ppy-induced fluorescence quenching could be used in the design of immunosensors to increase selectivity and sensitivity.     

Molecular photobleaching kinetics of Rhodamine 6G by one- and two-photon induced confocal fluorescence microscopy.

Under high-excitation irradiance conditions in one- and two-photon induced fluorescence microscopy, the photostability of fluorescent dyes is of crucial importance for the detection sensitivity of single molecules and for the contrast in fluorescence imaging. Herein, we report on the dependence of photobleaching on the excitation conditions, using the dye Rhodamine 6G as a typical example. The different excitation modes investigated include 1) one-photon excitation into the first-excited singlet state in the range of 500 to 528 nm by continuous wave and picosecond-pulsed lasers and 2) two- and one-photon excitation to higher-excited singlet states at 800 and 350 nm, respectively, by femtosecond pulses. Experimental strategies are presented, which allow resolving the photophysics. From single-molecule trajectories and fluorescence correlation spectroscopy, as well as with a simple theoretical model based on steady-state solutions of molecular rate equation analysis, we determined the underlying photobleaching mechanisms and quantified the photokinetic parameters describing the dependence of the fluorescence signal on the excitation irradiance. The comparison with experimental data and an exact theoretical model show that only minor deviations between the different theoretical approaches can be observed for high-pulsed excitation irradiances. It is shown that fluorescence excitation is in all cases limited by photolysis from higher-excited electronic states. In contrast to picosecond-pulsed excitation, this is extremely severe for both one- and two-photon excitation with femtosecond pulses. Furthermore, the photostability of the higher-excited electronic states is strongly influenced by environmental conditions, such as polarity and temperature.     

Quantitative comparison of X-ray fluorescence microtomography setups: Standard and confocal collimator apparatus

Recently, there has been a renewed interest for fluorescence spectroscopy, as provided by modern setups which allow 2D and 3D imaging of elemental distributions. Two directions are currently under development: the SR-based fluorescence tomography in polar scanning geometry, provided by the new generation of X-ray microprobes and the confocal scanning geometry, which can be fielded in both SR and laboratory environments. The new probes bring forth a new age in fluorescence spectrometry: high resolution, high intensity and high sensitivity which allow 3D elemental mapping of volumes. The major task now is the development of these complex tools into fully quantitative probes, reproducible and straightforward for general use. In this work we analyze two X-ray fluorescence microtomography techniques: an apparatus tomography using a confocal collimator for the data collection and a standard first generation Computed Tomography (CT) in the parallel scanning scheme. We calculate the deposited dose (amount of energy deposited and distributed in the sample during the data collection time) and find the conditions for the choice of the tomography scheme.     

Time-resolved fluorescence spectroscopy of hematoporphyrin, mesoporphyrin, pheophorbide a and chlorin e6 in ethanol and aqueous solution

The fluorescence decay I(t) and time-resolved spectra I(lambda, t) of some porphyrins and chlorins in ethanol and phosphate-buffered aqueous solution were investigated with a time-correlated single-photon-counting apparatus with a mode-locked Ar+ laser (514.5 nm) as the excitation source. The fluorescence of hematoporphyrin, mesoporphyrin and pheophorbide aa is considerably influenced by the conditions of aggregation (these compounds undergo aggregation in phosphate-buffered solution but not in ethanolic solution). The fluorescence decay of chlorin e6 which remains monomeric in both solvents is single exponential in all cases. The fluorescence spectra of hematoporphyrin, mesoporphyrin and pheophorbide a in phosphate-buffered solution are shifted with respect to the spectra obtained in ethanol; moreover, a new emission band (X band) appears, whose intensity increases on increasing the amount of equilibrium aggregates and shows a fast fluorescence decay. For hematoporphyrin and mesoporphyrin the appearance of the X band emission appears to be correlated with irreversible photoprocesses leading to fluorescent photoproducts. Analysis of the reported fluorescence spectra of cancer cells after incubation with hematoporphyrin derivative suggests that the fluorescent photoproducts might be formed also in vivo.     

Application of a fluorescent derivatization reagent 9-chloromethyl anthracene on determination of carboxylic acids by HPLC

A simple and sensitive high-performance liquid chromatography (HPLC) method is proposed for the analysis of some carboxylic acids in food samples and the environment. The use of 9-chloromethyl anthracene as a fluorescence-labeling reagent has been investigated. The derivatization reagent reacts with unitary carboxylic acids and tetrabutylammonium bromide as a catalyst within 50 min in acetonitrile to give esters, which can be separated by HPLC employing fluorescence detection at λ(ex) = 365 and λ(em) = 410 nm. The optimum conditions for derivatization, fluorescence detection and chromatographic separation are established. The method shows good sensitivity, with a detection limit from 0.18 to 2.53 pmol, and good linearity between 1-250 nmol/mL of each analyte. The practical applicability of the method was demonstrated by analyzing samples that were spiked with the acid standards, environment and food samples.     

The chemistry of constrained crown ring systems and fluorescence sensor applications

Using anthraquinone as a useful synthetic scaffold and the ability of anthraquinone to form stable intermediate reduction products (i.e. anthrones and anthranols), we have synthesized a wide variety of constrained crown ring systems where the receptor includes several types and patterns of Lewis bases that can tune receptor selectivity for different metal cations. Constrained crown ring systems are defined as macrocycles that contain an intraannular heteroatom, in addition to the normal peripheral Lewis bases that compose the outer ring of the macrocycle. These fluorescence sensors predominantly utilizes the internal charge transfer mechanism to promote fluorescence, but has also led to the development of new photophysical mechanisms, i.e. metal-mediated tautomerization, to selectively detect Zn(II) ion in solution. We are currently pursuing a number of synthetic avenues to incorporate new functional groups and lumophores such that a myiad of different photophysical mechanisms under optimal conditions can be employed to improve solubility, sensitivity and take advantage of the cross pollination of electrochemistry and fluorescence spectroscopy with these sensors which incorporate closely integrated electrochemical, fluorescence and receptor subunits.     

Choice of optimum conditions of emitter preparation for X-ray fluorescence analysis of aerosols

The nonuniformity of aerosol distribution over filter surface was studied. It was found that the distribution depends on the properties of the studied object and on the sampler type: particle concentration is often higher in the center of the filter, but in some cases, they shift to the edges; the uniform distribution of particles is observed rarely. It was shown that, if the emitter in X-ray fluorescence analysis (XRF) is a disk 3 cm in diameter cut from the center of a filter 5 cm in diameter, the systematic error of the results of analysis may be higher than 0.30. Recommendations on the choice of the conditions of sampling aerosols and emitter preparation are formulated. If these conditions are met, the results of XRF analysis of nonuniform filters are characterized by s_r = 0.05, which satisfies the admissible error.     

Development of an on-line automated sample clean-up method and liquid chromatography–tandem mass spectrometry analysis: application in an in vitro proteolytic assay

Fluorescence detection has been a method of choice in industry for screening assays, including identification of enzyme inhibitors, owing to its high-throughput capabilities, excellent reproducibility, and sensitivity. Occasionally, inhibitors are identified that challenge the fluorescence assay limit, necessitating the development of more sensitive detection methods to assess these compounds. For data mining purposes, however, original assay conditions may be required. A direct method transfer to highly sensitive and specific LC-MS-based methods has not always been possible due to the presence of MS-incompatible neutral detergents and non-volatile salts in the assay matrix. Utilizing an in vitro proteolytic screening assay for the serine protease hepatitis C virus (HCV) nonstructural (NS) 3 protease as a test case, we report the development of an automated sample clean-up procedure implemented on-line with liquid chromatography–tandem mass spectrometry (LC-MS/MS) analysis to complement fluorescence detection. Ion exchange and peptide microtraps were employed to remove MS-incompatible assay matrix components. Three protease inhibitors were used to validate the MS/MS method. Comparable potencies were achieved for these compounds when assessed by fluorescence and MS/MS detection. Furthermore, four-fold less enzyme could be utilized when employing the MS/MS method compared to fluorescence detection. The longer analysis time, however, resulted in reduced sample capacity. The potency of our designed HCV NS3 protease inhibitors are thus routinely evaluated using a continuous fluorescence-based assay. Only pertinent inhibitors approaching the fluorescence assay sensitivity limit are subsequently analyzed further by LC-MS/MS. This methodology allows us to maintain a database and to compare results independent of the detection method. Despite the relatively slow sample turnaround time of this LC-MS approach, the versatility of the automated on-line clean-up procedure and sample analysis can be applied to assays containing reagents which were historically considered to be MS incompatible.     

Fluorescence micro(spectro)scopy as a tool to study catalytic materials in action

Following its widespread use in biomedical research, fluorescence microscopy has recently been introduced in the catalysis field to study chemocatalytic processes with a high spatiotemporal resolution, a unique sensitivity down to the single molecule level and this under in situ conditions. This tutorial review is structured around the length scales that are currently accessible in fluorescence microscopy and discusses the different conceptual approaches that have been developed to study molecular concentration and dynamics like diffusion and catalytic conversion at these micron and sub-micron levels.     

Some applications of near-ultraviolet laser-induced fluorescence detection in nanomolar- and subnanomolar-range high-performance liquid chromatography or micro-high-performance liquid chromatography

In this work we present some applications of near-UV laser-induced fluorescence (LIF) with micro-HPLC (microHPLC) and HPLC. To test the sensitivity of the detection, we used pyrene and aflatoxins, because both of these molecules exhibit native fluorescence. Then we studied catecholamines derivatized with 1,2-diphenylethylenediamine. The results show that we were able to reach better sensitivity levels than previously described in LIF studies. For catecholamines, a 50-fold increase in sensitivity compared to conventional fluorescence was obtained. These results indicate that LIF detection associated with HPLC or microHPLC can be used to detect very low concentrations of substances that can be excited in the near-UV range after labeling at nanomolar concentrations.     

A Novel NIR Fluorescent Probe for Highly Selective Detection of Nitroreductase and Hypoxic-Tumor-Cell Imaging

Nitroreductase as a potential biomarker for aggressive tumors has received extensive attention. In this work, a novel NIR fluorescent probe for nitroreductase detection was synthesized. The probe Py-SiRh-NTR displayed excellent sensitivity and selectivity. Most importantly, the confocal fluorescence imaging demonstrated that HepG-2 cells treated with Py-SiRh-NTR under hypoxic conditions showed obvious enhanced fluorescence, which means that the NTR was overexpressed under hypoxic conditions. Moreover, the probe showed great promise that could help us to study related anticancer mechanisms research.     

Nonlinear decrease of background fluorescence in polymer thin-films - a survey of materials and how they can complicate fluorescence detection in microTAS

Polymers and plastics are receiving increased attention as materials for microfluidics and microTAS applications. Given the ubiquity of fluorescence detection techniques in micro-analytical systems, the fluorescence properties of polymers and plastics should not be overlooked. We survey some commonly available polymer thin-films for their fluorescence behaviour under standardized conditions to determine which materials are most suitable for high-sensitivity fluorescence detection lab chips. The initial fluorescence intensities of some of the materials surveyed were significantly higher than glass and fused silica controls, and decreased over the three hour period with complex kinetics. We then discuss how this has confounded fluorescence detection in our analytical context, and possible mechanisms for the decrease.     

Synthesis and Fluorescence Properties of Gold Nanoparticles Modified with Dithiocarbamate Functionalized Carbazole

Gold nanoparticles protected by the self-assembled monolayers of 9-[6-(N,N-dibutyl-amino-dithiocarbamate)-hexyl]-carbazole, CHBDTC in short, were prepared via a phase-transfer method. These surface-modified nanoparticles were characterized with UV-vis, photoluminescence spectroscopy and TEM. It was found that the CHBDTC-capped gold nanoparticles were stable under ambient conditions, which is attributed to the protection of the CHBDTC densely packed on the gold nanoparticle surface. The fluorescence emission spectra indicated that the fluorescence of CHBDTC was quenched to some extent by gold nanoparticles. And the CHBDTC-capped Au nanoparticles could be promisingly applied as biomolecular labels and in fabrication of novel photo-based nanodevices as well, owing to the photoactive sensitivity of CHBDTC.     

Fluorescence characteristics of inorganic complexes in hydrochloric acid medium at liquid-nitrogen temperature

A study of the low-temperature fluorescence characteristics of the ions of 55 elements in concentrated hydrochloric acid is reported. The spectral characteristics, effects of hydrochloric acid concentration and time, calibration linearity and sensitivity for Sb(III), Bi, Ce(III), Pb, Te(IV), Tl(I) and Sn(IV) have been investigated. Uranium(VI), copper(I) and antimony(V) also exhibit fluorescence under these conditions. The detection limits using a commercial spectrofluorimeter with modified sample cells are Sb(III), 10(-6)M; Bi(III), 10(-8)M; Ce(III), 10(-7)M; Pb, 10(-8)M; Te(IV), 10(-7)M; Tl(I), 10(-6)M; Sn(IV), 10(-4)M. The suitability of some inorganic acid solvents for clear glass formation at -196 degrees is also investigated.     

Microarray platform for profiling enzyme activities in complex proteomes

Activity-based protein profiling (ABPP) is a chemical method that utilizes active-site-directed probes to determine the functional state of enzymes in complex proteomes. Probe-labeled enzymes are typically detected by in-gel fluorescence scanning, a robust technique that nonetheless exhibits some key deficiencies, including limited sensitivity and resolution, as well as ambiguity regarding the molecular identity of the enzymes under investigation. Here, we report a microarray platform for ABPP that addresses these limitations. In this platform, proteomes are treated with ABPP probes in solution, after which labeled enzymes are captured and visualized on glass slides displaying an array of anti-enzyme antibodies. We show that ABPP microarrays exhibit superior sensitivity and resolution compared to gel-based methods, permitting the parallel analysis of several enzyme activities in proteomes, including cancer-associated proteases such as urokinase, matrix metalloproteinase-9, and prostate-specific antigen.     

Comparison of two different approaches to calibrate an energy-dispersive x-ray fluorescence spectrometer for the analysis of aerosol-loaded filters

The quantitative analysis of aerosol loaded filters by x-ray fluorescence spectroscopy implies the use of calibration curves obtained from synthetic standards. Two preparation methods to obtain these calibration samples are described and compared, showing that matrix and enhancement effects are neglible for membranous filters and that both calibrations lead to acceptable results. Calibration standards produced via an aerosol generator always lead to a greater sensitivity compared to the standard produced with droplets. The filters resist the conditions of replicated measurements.     

Comparison of two different approaches to calibrate an energy-dispersive x-ray fluorescence spectrometer for the analysis of aerosol-loaded filters

The quantitative analysis of aerosol loaded filters by x-ray fluorescence spectroscopy implies the use of calibration curves obtained from synthetic standards. Two preparation methods to obtain these calibration samples are described and compared, showing that matrix and enhancement effects are neglible for membranous filters and that both calibrations lead to acceptable results. Calibration standards produced via an aerosol generator always lead to a greater sensitivity compared to the standard produced with droplets. The filters resist the conditions of replicated measurements.     

Modulating the emission intensity of poly-(9,9-bis(6'-N,N,N-trimethylammonium)hexyl)-fluorene phenylene) bromide through interaction with sodium alkylsulfonate surfactants

The interaction between the cationic HTMA-PFP (Poly-(9,9-bis(6'-N,N,N-trimethylammonium)hexyl-fluorene phenylene) bromide) and oppositely charged sodium n-alkyl sulfonate surfactants of different chain lengths has been studied in DMSO-water solutions (4% v/v) by UV-visible absorption, fluorescence spectroscopy, fluorescence lifetimes, electrical conductivity, and (1)H NMR spectroscopy. Polymer-surfactant interactions lead to complex spectroscopic behaviors which depends on surfactant concentration. At low surfactant concentrations, the observed strong static fluorescence quenching of fluorescence seems to be associated with formation of aggregates between polymer chains neutralized through interaction with surfactants. This is supported by conductivity and by analysis of absorption spectra deconvoluted at each surfactant concentration using an adapted iterative method. In contrast, above the surfactant critical micelle concentration, there is a strong fluorescence enhancement, leading in some cases to higher intensities than in the absence of surfactants. This is attributed to the transformation of the initially formed aggregates into some new aggregate species involving surfactant and polymer. These changes in HTMA-PFP fluorescence as a function of n-alkyl sulfonate concentration are important for the general understanding of polymer-surfactant interactions, and the aggregates formed may be important as novel systems for applications of these conjugated polyelectrolytes.