Ligand entrapment in twofold interpenetrating PtS matrixes by metallo-organic frameworks

Single-crystal X-ray crystallography was used to determine the structures of four metallo-organic frameworks (MOFs). A dendritic tetradentate ligand (tetrakis(isonicotinoxymethyl)methane, TINM) was used with first-row transition-metal elements copper, nickel, and cobalt to synthesize MOFs with a PtS interpenetration, due to both planar and tetrahedral junctions being present in the framework. Two different polymeric complexes, 1 and 2, were obtained from similar starting materials, TINM and Cu(NO(3))(2).3H(2)O, but different solvents. The use of dichloromethane in addition to methanol and water promoted the coordination of nitrate ions to the copper. With only methanol and water used as solvent, the copper atom was coordinated to water molecules instead. Compound 1 has pores going through the structure in two dimensions, along crystallographic axes a and c with diameters of the pores (the diameters correspond to the minimum distances between van der Waals surfaces of opposing walls defined by projection along channel axis) approximately 1.0 x 3.1 and 2.5 x 3.7 A, respectively. Compound 2 has channels along all crystallographic axes. The dimensions of the channels are 3.2 x 3.7, 3.7 x 5.0, and 2.8 x 4.1 A, respectively. The structures of 3 and 4 entrap a large guest ligand molecule in the framework. The guest ligand is uncoordinated, although the pattern that the entrapped guests form brings the two arms of any two guests within close range. The lack of 3-fold penetration is due to only two arms being close to each other and also the fact that there is no space for an additional set of metal centers.     

Anion mediated activation of guanidine rich small molecules

Cell penetrating peptides (CPPs) and their synthetic analogs are of widespread interest. Here we report that guanidine rich small molecules can be potential membrane transporters in the presence of hydrophobic counteranion activators. To our knowledge, this is the first example of small molecules that mimic the anion-activated transport function of CPP.     

Dynamics of benzene molecules situated in metal-organic frameworks

In this paper, we investigate the gyroscopic motion of a benzene molecule C₆H₆, which comprises an inner carbon ring and an outer hydrogen ring, and is suspended rigidly inside a metal-organic framework. The metal-organic framework provides a sterically unhindered environment and an electronic barrier for the benzene molecule. We model such gyroscopic motion from the inter-molecular interactions between the benzene ring and the metal-organic framework by both the Columbic force and the van der Waals force. We also capture additional molecular interactions, for example due to sterical compensations arising from the carboxylate ligands between the benzene molecule and the framework, by incorporating an extra empirical energy into the total molecular energy. To obtain a continuous approximation to the total energy of such a complicated atomic system, we assume that the atoms of the metal-organic framework can be smeared over the surface of a cylinder, while those for the benzene molecule are smeared over the contour line of the molecule. We then approximate the pairwise molecular energy between the molecules by performing line and surface integrals. We firstly investigate the freely suspended benzene molecule inside the framework and find that our theoretical results admit a two-fold flipping, with the possible maximum rotational frequency reaching the terahertz regime, and gigahertz frequencies at room temperature. We also show that the electrostatic interaction and the thermal energy dominate the gyroscopic motion of the benzene molecule, and we deduce that the extra energy term could possibly reduce the rotational frequency of the rigidly suspended benzene molecule from gigahertz to megahertz frequencies at room temperature, and even lower frequencies might be obtained when the strength of these interactions increases.     

几何限制对碳纳米管中气体小分子吸附与分离的影响

使用DFTB方法研究多种单壁碳纳米管(SWCNTs)的应力-应变关系,预测了在几何限制作用下,其杨氏模量和能带结构的变化规律.系统探讨了外部应力作用下SWCNTs内外表面吸附H_2,N_2和H_2S气体分子能力的变化规律,确定了SWCNTs对于上述混合气体的分离和提纯能力.     

Electrostatically "patchy" coatings via cooperative adsorption of charged nanoparticles

Solutions containing oppositely charged nanoparticles (NPs) deposit "patchy" coatings of alternating charge distribution on various types of materials, including polymers, elastomers, and semiconductors. Surface adsorption of the NPs is driven by cooperative electrostatic interactions and does not require chemical ligation or layer-by-layer schemes. The composition and the quality of the coatings can be regulated by the types, the charges, and the relative concentrations of the NPs used and by the pH. Dense coatings form on flat, curvilinear, or micropatterned surfaces, are stable against common chemicals for prolonged periods of time, and can be used in applications ranging from bacterial protection to plasmonics.     

Hierarchical modeling of ammonia adsorption in functionalized metal-organic frameworks

The adsorption of ammonia in four metal-organic frameworks modified with different functional groups (-OH, -C=O, -Cl, -COOH) was investigated using a hierarchical molecular modeling approach. To describe the hydrogen bonding and other strong interactions between NH(3) and the surface functional groups, a set of Morse potential parameters were obtained by fitting to energies from quantum chemical calculations at the MP2 level of theory. We describe a systematic force field parameterization process, in which the Morse parameters were fitted using simulated annealing to match a large number of single-point MP2 energies at various distances and angles. The fitted potentials were then used in grand canonical Monte Carlo simulations to predict ammonia adsorption isotherms and heats of adsorption in functionalized MIL-47, IRMOF-1, IRMOF-10, and IRMOF-16. The results show that ammonia adsorption can be significantly enhanced by using materials with appropriate pore size, strongly interacting functional groups, and high density of functional groups.     

氦原子碰撞诱导解离表征原子团簇上小分子的吸附

研究原子团簇上小分子的吸附和反应对认识一些复杂化学过程的微观机理非常重要,为了表征小分子如何吸附在原子团簇上,我们研制了一套氦原子碰撞诱导解离串级飞行时间质谱装置.该装置配有激光溅射团簇源,团簇在快速流动管里与一氧化碳、水等小分子发生反应,产物团簇通过第一级飞行时间质谱选质后与一束氦气(He)发生碰撞,使用第二级飞行时间质谱检测碰撞碎片的分布.结果表明:一些过渡金属氧化物团簇上小分子的弱吸附、强吸附以及氧化性吸附能够通过该实验装置进行表征.     

Site characteristics in metal organic frameworks for gas adsorption

Metal organic frameworks (MOFs) are a new class of nanoporous materials that have many potential advantages over traditional nanoporous materials for several chemical technologies including gas adsorption, catalysis, membrane-based gas separation, sensing, and biomedical devices. Knowledge on the interaction of guest molecules with the MOF surface is required to design and develop these MOF-based processes. In this review, we examine the importance of identification of gas adsorption sites in MOFs using the current state-of-the-art in experiments and computational modeling. This review provides guidelines to design new MOFs with useful surface properties that exhibit desired performances, such as high gas storage capacity, and high gas selectivity.     

Prediction of adsorption of small molecules in porous materials based on ab initio force field method

Computational prediction of adsorption of small molecules in porous materials has great impact on the basic and applied research in chemical engineering and material sciences. In this work,we report an approach based on grand canonical ensemble Monte Carlo(GCMC) simulations and ab initio force fields. We calculated the adsorption curves of ammonia in ZSM-5 zeolite and hydrogen in MOF-5(a metal-organic-framework material). The predictions agree well with experimental data. Because the predictions are based on the first principle force fields,this approach can be used for the adsorption prediction of new molecules or materials without experimental data as guidance.     

The relative contribution of adsorption to the overall sorption and transport of small molecules in amber

In 1987, Berner and Landis reported that upon vacuum grinding of 80 million year old amber, a gas mixture was released which suggested an oxygen-rich prehistoric environment. Fundamental to their argument was the assumption that amber, an organic glass formed during the fossilization of tree sap, is a perfect sealant. Their assumption was challenged by three technical comments which collectively concluded that gases diffuse readily through amber. In order to defend their key assumption that gases are perfectly trapped in amber, Berner and Landis dismissed the data obtained through gravimetric sorption experiments as only a measure of surface adsorption rather than bulk absorption in and concomitant diffusion through the amber matrix. The validity of interpreting these gravimetric experiments as a measure of bulk diffusion is demonstrated by exploring the physical basis for interpreting gravimetric sorption data. Most importantly, new experimental gravimetric sorption data are presented which demonstrate an explicit separation of adsorption from diffusion-controlled absorption and also reveal that adsorption accounts for a very small fraction of the total sorption in amber.     

Chemocavity: specific concavity in protein reserved for the binding of biologically functional small molecules

The idea that there should be a specific site on a protein for a particular functional small molecule is widespread. It is, however, usually not so easy to understand what characteristics of the site determine the binding ability of the functional small molecule. We have focused on the concurrence rate of the 20 standard amino acids at such binding sites. In order to correlate the concurrence rate and the specific binding site, we have analyzed high-quality X-ray structures of complexes between proteins and small molecules. A novel index characterizing the binding site based on the concurrency rate has been introduced. Using this index we have identified that there is a specific concavity designated as a chemocavity where a specific group of small molecules, i.e., canonical molecular group, is highly inclined to be bound. This study has demonstrated that a chemocavity is reserved for a specific canonical molecular group, and the prevalent idea has been confirmed.     

Carbon dioxide capture-related gas adsorption and separation in metal-organic frameworks

Reducing anthropogenic CO₂ emission and lowering the concentration of greenhouse gases in the atmosphere has quickly become one of the most urgent environmental issues of our age. Carbon capture and storage (CCS) is one option for reducing these harmful CO₂ emissions. While a variety of technologies and methods have been developed, the separation of CO₂ from gas streams is still a critical issue. Apart from establishing new techniques, the exploration of capture materials with high separation performance and low capital cost are of paramount importance. Metal-organic frameworks (MOFs), a new class of crystalline porous materials constructed by metal-containing nodes bonded to organic bridging ligands hold great potential as adsorbents or membrane materials in gas separation. In this paper, we review the research progress (from experimental results to molecular simulations) in MOFs for CO₂ adsorption, storage, and separations (adsorptive separation and membrane-based separation) that are directly related to CO₂ capture.     

Molecular simulation of adsorption and diffusion of hydrogen in metal-organic frameworks

Metal-organic frameworks (MOFs) are thought to be a set of promising hydrogen storage materials; however, little is known about the interactions between hydrogen molecules and pore walls as well as the diffusivities of hydrogen in MOFs. In this work, we performed a systematic molecular simulation study on the adsorption and diffusion of hydrogen in MOFs to provide insight into molecular-level details of the underlying mechanisms. This work shows that metal-oxygen clusters are preferential adsorption sites for hydrogen in MOFs, and the effect of the organic linkers becomes evident with increasing pressure. The hydrogen storage capacity of MOFs is similar to carbon nanotubes, which is higher than zeolites. Diffusion of hydrogen in MOFs is an activated process that is similar to diffusion in zeolites. The information derived in this work is useful to guide the future rational design and synthesis of tailored MOF materials with improved hydrogen adsorption capability.     

Recent advances in metal-organic frameworks for adsorption of common aromatic pollutants

This review (with 85 refs.) summarizes the recent literature on the adsorption of common aromatic pollutants by using modified metal-organic frameworks (MOFs). Four kinds of aromatic pollutants are discussed, namely benzene homologues, polycyclic aromatic hydrocarbons (PAHs), organic dyes and their intermediates, and pharmaceuticals and personal care products (PPCPs). MOFs are shown to be excellent adsorbents that can be employed to both the elimination of pollutants and to their extraction and quantitation. Adsorption mechanisms and interactions between aromatic pollutants and MOFs are discussed. Finally, the actual challenges of existence and the perspective routes towards future improvements in the field are addressed.

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Graphical abstract Recent advance on adsorption of common aromatic pollutants including benzene series, polycyclic aromatic hydrocarbons, organic dyes and their intermediates, pharmaceuticals and personal care products by metal-organic frameworks.

     

Role of spatial distortions on the quadratic nonlinear optical properties of octupolar organic and metallo-organic molecules

Following on the recent experimental demonstration of a discrepancy between the nonlinear optical (NLO) behavior of several pi-conjugated chromophores and their assumed octupolar symmetry, the authors investigate how geometrical distortions influence the NLO response of multipolar push-pull molecules. Their analytical model is set on a basis of valence-bond and charge-transfer states to estimate the hyperpolarizability of organic and metallo-organic chromophores using the lowest possible number of variables. Since symmetry breakdown changes the definition of the molecular Cartesian framework, tensorial spherical coordinates are implemented. The evolution of the nonlinear molecular anisotropy with possible rotational deviations is then evaluated for two recently studied chromophores. Zero-frequency calculations show that, outside optical resonance, weak geometrical distortions lead to strong anisotropy variations in agreement with experimental data. Their goal is to underscore which molecular engineering strategies should be applied when designing a photoisomerizable nonlinear octupole.     

Weak specific adsorption of ions

It is shown that the weak specific adsorption of ions not involving the recharging of the electrode surface is characterized by the following unusual features: practical absence of any shift of p.z.c.; a very small discrepancy between the experimental differential capacity curves and similar curves calculated under the assumption that specific adsorption is absent (q₁ = 0); insensitivity of the total surface excess of cations to their distribution between the dense and diffuse layers; practical independence of q₁ of temperature and the bulk concentration of binary electrolyte; practical coincidence of c.t.p. calculated for different concentrations of surface-active supporting electrolyte assuming q₁ = 0. It is also shown on the basis of the experimental data for the system {mc CsCl + (1 ? m)c LiCl} that the main fraction of the effective charge, determined by the mixed electrolyte method of Hurwitz—Parsons, results from the true specific adsorption of Cs⁺ cations at the Hg/H₂O interface and only a small fraction of this charge (?20%) can be associated with different positions of the o.H.p. for Li⁺ and Cs⁺ ions.     

Computer simulation of the adsorption of light gases in covalent organic frameworks

Grand canonical Monte Carlo simulations of argon, hydrogen, and methane adsorption in four covalent organic frameworks are presented. Argon adsorption isotherms from computer simulations overestimate the amount adsorbed by 25% upon saturation, with respect to the available experiments at T = 87 K. Hydrogen adsorption isotherms show that these materials might attain a 30% increase for the uptake when compared with analogous simulations performed for metal organic frameworks at T = 77 K and T = 298 K. Methane adsorption isotherms give a strong indication that at least one material in this class, COF-102, could meet or exceed the Department of Energy's target of 180 cm3 (STP)/cm3 for P = 35 bar and room temperature. The origin of this large affinity for methane is investigated by analyzing the structure of the potential energy surface of interaction between the adsorbate and the adsorbent.     

Understanding adsorption and interactions of alkane isomer mixtures in isoreticular metal-organic frameworks

Novel metal-organic frameworks (MOFs) may lead to advances in adsorption and catalysis owing to their superior properties compared to traditional nanoporous materials. A combination of the grand canonical Monte Carlo method and configurational-bias Monte Carlo simulation was used to evaluate the adsorption isotherms of C4-C6 alkane isomer mixtures in IRMOF-1 and IRMOF-6. The amounts of adsorbed linear and branched alkanes increase with increasing pressure, and the amount of branched alkanes is larger than that of the linear ones. The locations of the alkane isomer reveal that the Zn4O clusters of the IRMOFs are the preferential adsorption sites for the adsorbate molecules. The interaction energy between the Zn4O cluster and the adsorbate is larger than that between the organic linker and the adsorbate. It was further confirmed that the Zn4O cluster plays a much more important role in adsorption by pushing a probe molecule into the pore at positions closer to the Zn4O cluster. It is difficult for branched alkane molecules to approach the Zn4O cluster of IRMOF-6 closely owing to strong spatial hindrance. In addition, the adsorption selectivity is discussed from the viewpoints of thermodynamics and kinetics, and the diffusion behavior of n-butane and 2-methylpropane were investigated to illustrate the relationship between diffusion and adsorption.