Towards biochips using microstructured optical fiber sensors

In this paper we present the first incorporation of a microstructured optical fiber (MOF) into biochip applications. A 16-mm-long piece of MOF is incorporated into an optic-fluidic coupler chip, which is fabricated in PMMA polymer using a CO₂ laser. The developed chip configuration allows the continuous control of liquid flow through the MOF and simultaneous optical characterization. While integrated in the chip, the MOF is functionalized towards the capture of a specific single-stranded DNA string by immobilizing a sensing layer on the microstructured internal surfaces of the fiber. The sensing layer contains the DNA string complementary to the target DNA sequence and thus operates through the highly selective DNA hybridization process. Optical detection of the captured DNA was carried out using the evanescent-wave-sensing principle. Owing to the small size of the chip, the presented technique allows for analysis of sample volumes down to 300 nL and the fabrication of miniaturized portable devices.      

Fluorescence-based fibre optic arrays: a universal platform for sensing

Optical fibres provide a universal sensing platform as they are easily integrated with a multitude of different sensing schemes. Such schemes enable the preparation of a multitude of sensors from relatively straightforward pH sensors, to more complex ones, including artificial olfaction sensors, high-density oligonucleotide arrays, and high-throughput cell-based arrays. Imaging fibre bundles comprised of thousands of fused optical fibres are the basis for an optically connected, individually addressable parallel sensing platform. Fibre optic imaging bundles possess miniature feature sizes (3-10 micron diameter fibres), allowing high-density sensor packing (approximately 2 x 10(7) sensors per cm2). Imaging fibre bundles transmit coherent images enabling combined imaging and sensing, relating the responses monitored by the sensor to observable physical changes. The individual fibre cores can also be selectively etched to form a high-density microwell array capable of housing complementary sized microsensors. The miniature feature sizes facilitate a faster response and more sensitive measurement capabilities. The platform is extremely versatile in its sensing design, allowing the sensing scheme to be tailored to fit the experimental design, whether for monitoring single analytes or more complex multiplexed assays. A number of sensing schemes and applications are described in this review.     

Microbe removal using a micrometre-sized optical fiber

The growing global shortage of fresh water has lead to the need for technological innovations for water purification and reuse. The removal of pathogenic microbes from urban, laboratory or industrial wastewater is one of the most challenging and critical issues due to the potential risk of microbe outbreaks. In addition, microbe removal in human blood or tissues has also inspired novel techniques for extracting and collecting different cells in fluidic channels or vessels. Recently, efficient removal of microbes from flowing water running under gravity feed has been achieved using filters in nanotubes or nanofibers. Here we report a highly efficient removal of microbes from flowing water in a fluidic channel using a reusable micrometre-sized optical fiber. Our technique is based on photophoresis of the microbes induced by the radiation of 1.55 μm wavelength injected into the fiber. Yeast cell suspensions, as a sample of microbe-contaminated water, are flown through a fluidic channel and the suspended cells are collected by the photophoretic forces, leading to a consistent accumulation of the yeast cells. The experiments indicate that a removal efficiency of 99.9% can be obtained when the flow velocity of the suspensions is less than the peak photophoretic velocity of the yeast cells.     

Organosilane self-assembled monolayer growth from supercritical carbon dioxide in microstructured optical fiber capillary arrays

Microstructured optical fibers form a new class of extreme aspect ratio templates that are well-suited for precise, designed spatial organization of materials and molecules at dimensions down to the nanoscale. The extreme aspect ratios of the nanoscale to microscale pores in the templates necessitates new approaches to fabrication of nanowires, nanotubes, and self-assembled monolayers within them. High-pressure fluids, which have lower viscosities than liquids and no surface tension, are well-suited for penetrating such extreme aspect ratio capillaries. Here we report an approach to fabricating self-assembled monolayers within microstructured optical fibers using near supercritical or supercritical carbon dioxide. An AFM-based "shaving" technique has been developed to characterize the monolayers formed in capillaries that are too small to allow for characterization by conventional approaches.     

Measuring ambient radon using a scintillating optical fiber bundle

A new method for detecting and measuring radon and its radioactive progeny is described, involving a bundle of scintillating optical fibers. The general sensor construction is described. A preliminary field trial is described in which the fiber sensor responded in a comparable way with a commercial radon measurement instrument, to varying ambient radon levels.     

Gas chromatographic sensing on an optical fiber by mode-filtered light detection

A chemical sensor for gas phase measurements is reported which combines the principles of chemical separation and fiber optic detection. The analyzer incorporates an annular column Chromatographic sensor, constructed by inserting a polymer-clad optical fiber into a silica capillary. Light from a helium-neon laser is launched down the fiber, producing a steady intensity distribution within the fiber, but a low background of scattered light. When sample vapor is introduced to the sensor, and an analyte-rich volume interacts with the polymer cladding, Chromatographic retention is observed simultaneously with a change in the local refractive index of the cladding. An increase in cladding refractive index (RI) causes light to be coupled out of the fiber, with detection at a right-angle to the annular column length to provide optimum S/N ratio. This detection mechanism is called mode-filtered light detection. We report a gas Chromatographic separation on a 3.1 m annular column (320 microm i.d. silica tube, 228 microm o.d. fiber with a 12 microm fluorinated silicone clad) of methane, benzene, butanone and chlorobenzene in 6 min. The annular column length was reduced to 22 cm to function as a sensor, with selected organic vapors exhibiting unique retention times and detection selectivity. The detection selectivity is determined by the analyte RI and the partition coefficient into the cladding. The calculated limit of detection (LOD) for benzene vapor is 0.03% by volume in nitrogen, and several chlorinated species had LOD values less than 1%. For binary mixtures of organic vapors, the detected response appears to be the linear combination of the two organic standards, suggesting that the annular column may be useful as a general approach for designing chemical sensors that incorporate separation and optical detection principles simultaneously.     

Near-infrared tetra-substituted aluminum 2, 3-naphthalocyanine dyes for optical fiber applications

The synthesis and spectral characterization of several tetra-substituted aluminum 2, 3-naphthalocyanine dyes for the determination of metal ions is reported. The synthesis is done by means of a homogeneous phase reaction, replacing the previously used heterogeneous method. The new scheme allows for improved product yields, higher purity, better product reproducibility and can be monitored at different stages using UV-Vis-near-infrared spectroscopy. The incorporation of electron-donating or -withdrawing groups was found to influence the product yield and to cause a shift in the absorbance maximum. The typical shift in the excitation maximum (of up to 27 nm) enables the dye to match the output of semiconductor laser diodes. In addition the tetra-substituted groups were capable of undergoing an ion-exchange process with the metal ions which produced a change in the fluorescence signal of the dye. Similar results were achieved using an optical fiber metal probe. The detection of metal ions using the near-infrared dyes was accomplished via steady-state fluorescence using both a commerically available instrument and a fiber optic system and also via the fluorescence lifetime technique.     

Room temperature phosphorescence analyses of polycyclic aromatic hydrocarbons using an imaging sensing system combined with a bifurcated optical fiber and a cooled charge coupled device detector

This paper presents a development of a solid support RT phosphorescence procedure for the determination of polycyclic aromatic hydrocarbons, based on the use of a Xenon flash lamp as the excitation source, a fiber optic sensor as a guide of light, an imaging spectrograph and a cooled two dimensional charge coupled device as the detector. Non fluorescent Whatman N degrees 1 filter paper was used as the solid substrate and, thallium nitrate and sodium iodide were used to enhance room temperature phosphorescence of pyrene, benzo (a) anthracene, naphtalene, phenanthrene, dibenzothiophene, fluorene, coronene and fluoranthene. Analytical curves of eight phosphors give linear dynamic ranges from one and a half to two decades and limits of detection of femtomolar to picomolar/spot were reported. Quantitative analyses in mixtures were also carried out using the internal standard method. Results led to a 10% better accuracy for determinations of pyrene and benzo (a) anthracene.     

Monitoring the quality of frying oils using a nanolayer coated optical fiber refractometer

The analysis of the quality of food oils is of paramount importance, because the degradation of oils can lead to formation of harmful substances to the human organism. With the increase of the degradation of oils an increase of its refractive index occurs. The objective of this work is to develop and to characterize optical fiber refractometers sensitive to variations of refractive index of food oil samples. The optical fiber refractometers thanks to the intrinsic characteristics make them suitable for monitoring the quality of frying oils. They possess the advantages to require small volumes of sample for analysis, do not contaminate the sample, and supply the response in real time. In this work a long period grating (LPG) as refractometer is used because of their sensitivity to refractive index of the external media: degraded and not degraded frying oil samples. The oil samples had been characterized by the analysis of total polar components. The refractive index of oil is above 1.47, this region the LPG does not show enough sensitivity, a nanolayer of an organic material was coated onto the fiber. Using the Langmuir-Blodgett technique the response of LPG is modified according to the refractive index and thickness of the film. The deposition of the film modifies the rates effective modes of cladding, thus improving the response of the changes in the refractive index of the external media higher than that the refractive index of the cladding (n = 1.457).     

Enhanced optical oxygen sensing using a newly synthesized ruthenium complex together with oxygen carriers

In this article, an emission based, simple and fast method is proposed for the determination of gaseous oxygen. A newly synthesized fluorophore, dichloro-{2,6-bis[1-(4-dimethylamino-phenylimino) ethyl]pyridine}ruthenium(II) has been used for oxygen sensing together with oxygen carrier perfluorochemicals (PFCs) in silicon matrix. It should be noted that the solubility of oxygen in fluorocarbons is about three to ten times large as that observed in the parent hydrocarbons or in water, respectively. Employed PFCs are chemically and biochemically inert, have high dissolution capacities for oxygen, and, once doped into sensing film, considerably enhance the response of sensing agent.     

Mixed C18 and C1 modification on an optical fiber for chromatographic sensing

An optical fiber-chromatographic sensor, aiming at simultaneous and selective response to multiple components following a chromatographic separation, is described. We report an improved approach for immobilization of octadecyl (C(18)) and methyl (C(1)) moieties as stationary phase on an optical fiber suitable as a sensing phase for organic solutes. By this approach, the stability and lifetime of the sensing layer as well as the detectability and retention behavior of the chromatographic sensor could be improved. Infrared spectroscopy was employed to confirm the presence of C(18) and C(1) moieties on the modified surface of the optical fiber. The chromatographic sensor was applied, with good sensitivity and chemical selectivity, to the simultaneous separation and detection of bromobenzene and toluene, using water as the mobile phase.     

Acid-base titrations using fluorescent indicators and fiber optical light guides

Summary A report is given on acid-base titrations with fluorescent indicators whose colour changes are followed with the help of fibre optical light guides. Acids as well as bases can be titrated using the almost ideal pH-indicator, 1-hydroxypyren-3, 6,8-trisulphonate. The method offers some principal advantages over electrochemical ones: (a) No reference signals are required; (b) there are no interferences by electrochemical potentials; (c) relatively inexpensive components may be used; (d) solutions harmful to glass electrodes may be titrated as well. The sensitivity of the method towards daylight is a disadvantage, so that titrations have to be performed in diffuse light or, even better, in the dark.

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Säure-Basen-Titrationen mit Hilfe fluorescierender Indicatoren und faseroptischer Lichtleiter

Zusammenfassung Es wird über die Möglichkeit von SäureBasen-Titrationen mit Hilfe eines Fluorescenzindicators unter Verwendung faseroptischer Lichtleiter berichtet. Säuren und Basen lassen sich, auch in Gegenwart farbiger oder fluorescierender Störstoffe, mit Hilfe des als ideal angesehenen pH-Indicators 1-Hydroxypyren-3,6,8-trisulfonat titrieren. Das Verfahren bietet gegenüber elektrochemischen Verfahren einige prinzipielle Vorteile: (a) Es werden keine Referenzmessungen benötigt; (b) es können keine Störungen durch elektrische Potentiale auftreten; (c) die Titrationen werden mit Hilfe kostengünstiger Elemente durchgeführt; (d) es können auch Lösungen titriert werden, die Glaselektroden angreifen würden. Nachteilig ist die Empfindlichkeit gegenüber dem Umgebungslicht, so daß entweder bei diffusem Licht oder überhaupt im Dunkeln gearbeitet werden muß.

     

In situ sensing of metal ion adsorption to a thiolated surface using surface plasmon resonance spectroscopy

The kinetics of the adsorption of metal ions onto a thiolated surface and the selective and quantitative sensing of metal ions were explored using surface plasmon resonance (SPR) spectroscopy. The target metal ion was an aqueous solution of Pt2+ and a thin-gold-film-coated glass substrate was modified with 1,6-hexanedithiol (HDT) as a selective sensing layer. SPR spectroscopy was used to examine the kinetics of metal ion adsorption by means of the change in SPR angle. The selectivity of the thiolated surface for Pt2+ over other divalent metal ions such as Cu2+, Ni2+, and Cd2+ was evident by the time-resolved SPR measurement. SPR angle shift, deltatheta(SPR), was found to increase logarithmically with increasing concentration of Pt2+ in the range of 1.0 x 10(-5)-1.0 mM. The rate of Pt2+ adsorption on HDT observed at both 0.1 and 1 mM Pt2+ accelerates until the surface coverage reaches approximately 17%, after which the adsorption profile follows Langmuirian behavior with the surface coverage. The experimental data indicated that heavy metal ions were adsorbed to the hydrophobic thiolated surface by a cooperative mechanism. A mixed self-assembled monolayer (SAM) composed of HDT and 11-mercaptoundecanoic acid was used to reduce the hydrophobicity of the thiol-functionalized surface. The addition of hydrophilic groups to the surface enhanced the rate of adsorption of Pt2+ onto the surface. The findings show that the adsorption of metal ions is strongly dependent upon the hydrophilicity/hydrophobicity of the surface and that the technique represents an easy method for analyzing the adsorption of metal ions to a functionalized surface by combining SPR spectroscopy with a SAM modification.     

Selective calcium ion sensing with a bichromophoric squaraine foldamer

Several squaraine tethered bichromophoric podand systems 1a-d and a monochromophoric analogue 2 were prepared and characterized. Among these, the bichromophore, 1b, containing five oxygen atoms in the flexible podand moiety was found to specifically bind Ca(2+) in the presence of other metal ions such as K(+), Na(+), and Mg(2+). The selective binding of Ca(2+) is clear from the absorption and emission spectral changes as well as by the visual color change of 1b from light-blue to an intense purple-blue. Benesi-Hildebrand and Job plots confirmed a 1:1 binding between 1b and Ca(2+). Signaling of the binding event is achieved by the cation-induced folding of the bichromophore and the resultant exciton coupling between the squaraine chromophores. The monochromophoric squaraine dye 2 failed to give optical signals upon Ca(2+) binding, due to the absence of exciton interaction in the bound complex. Titration of the folded complex 9 with EDTA released the metal ion from the complex, thereby regaining the original absorption and emission properties of the bichromophore. The squaraine foldamer 1b reported here is the first example of a selective chromogenic Ca(2+) sensor, which works on the principle of exciton interaction in the folded Ca(2+) complex of a bichromophore, the optical properties of which are similar to those of the "H"-type aggregates of analogous squaraine dyes.     

Orthophosphate and metaphosphate ion removal from aqueous solution using alum and aluminum hydroxide

The removal of orthophosphates (10(-2) kg P m(-3)), condensed phosphates (10(-2) kg P m(-3)), and mixtures of both (5 x 10(-3) kg P m(-3) as orthophosphate and 5 x 10(-3) kg P m(-3) as metaphosphate) in aqueous solution is studied using alum and aluminum hydroxide. The effects of coagulant dose, pH, temperature, aging of aluminum hydroxide, and presence of different ions are investigated. On the basis of the experimental results, alum is much more efficient in phosphorus removal than aluminum hydroxide even if, in both cases, at the conditions studied, the active coagulant form is Al(OH)(3). The differences then could be due to the higher activity of the in situ formed hydroxide. Orthophosphates and metaphosphates seem to have similar behavior vs pH variation: maximum removal is achieved at pH values 5-6 in all cases. On the other hand, in the simultaneous presence of both P forms, orthophosphate and metaphosphate ions have different affinities for the surface sites of aluminum hydroxide, since for both alum and aluminum hydroxide, orthophosphates are preferentially removed compared to metaphosphates, due probably to orientation effects and the charge per P atom. The presence of sodium, potassium, magnesium, sulfate, chloride, and magnesium, at the concentrations studied and for a pH value of 6, does not influence P removal. Temperature variation, between 25 and 60 degrees C, does not affect alum efficiency but both P forms are increasingly removed with increasing temperature, probably due to polymer Al(OH)(3) breaking, producing new surfaces for adsorption. Aging decreases sorption capacity of Al(OH)(3), while crystallites of increasing size are formed. Finally adsorption of both P forms is best described by the Freundlich isotherm [[K(F)=(49.1-69.1) x 10(-3) (m(3)kg(-1))(1/N), 1/N: 0.14-0.19 for T=25-60 degrees C] and [ K(F)=(1.58-2.79) x 10(-3) (m(3)kg(-1))(1/N), 1/N: 2.17-2.47 for T=25-60 degrees C] for orthophosphate and metaphosphate, respectively.     

Experimental study on the fiber pull-out of composites using digital gradient sensing technique

A method to measure the stress field at the fiber tip in the fiber pull out test was proposed by using a digital gradient sensing technique. First, the principle of digital gradient sensing is introduced, and the non-contact optical system of digital gradient sensing developed. Then, a fiber reinforced composite model specimen, where a nail was inserted in epoxy resin to act as a fiber, was performed, and a pull out test was conducted on the specimen using the digital gradient sensing technique. Finally, the angular deflections contour at the fiber tip was obtained, and the stress intensity factor was extracted from the angular deflections. The results show that the stress intensity factor at the fiber tip extracted from the angular deflections agreed with the results calculated by the finite element method.     

Pulse timing and optical interface between a neodymium: yttrium aluminum garnet laser and a Fourier transform ion cyclotron resonance mass spectrometer.

Laser desorption/ionization combined with pulsed (time-of-flight or Fourier transform ion cyclotron resonance) mass spectrometric detection is a powerful technique for analysis of involatile compounds and mixtures. Such experiments were originally conducted with pulsed CO2 lasers. Although a pulsed CO2 laser can be operated in single-shot mode, Nd: YAG lasers perform best with multiple flashes for warm-up before the final Q-switch output light pulse, thus creating the need to synchronize the desired final laser-output pulse with the event sequence for mass spectrometric analysis. In this paper, we describe a new and simple interface (both optical and electronic components) between a Continuum (formerly Quantel) Model YG 660A Nd:YAG laser and an Extrel FTMS-2000 mass spectrometer. The optics are modified from a prior pulsed CO2 laser interface from Extrel. Synchronization between the Nd:YAG laser and the mass spectrometer event sequence is achieved by means of a simple timing circuit that uses an inexpensive pulsing device and is triggered by pulses generated directly from the Extrel 1280 data system and cell controller, in contrast to the only prior published method that required an auxiliary microcomputer. The present interface method is highly flexible, and makes possible complex sequence events involving laser pulses for e.g.: desorption/ionization of solids; photoionization of gaseous neutrals; and photodissociation and photodetachment of gaseous ions.     

An optical fiber biosensor for chlorpyrifos using a single sol-gel film containing acetylcholinesterase and bromothymol blue

An optical fiber biosensor consisting of acetylcholinesterase (AChE) and bromothymol blue (BTB) doped sol-gel film was employed to detect organophosphate pesticide chlorpyrifos. The main advantage of this optical biosensor is the use of a single sol-gel film with immobilized AChE and BTB. The compatibility of this mixture (AChE and BTB) with the sol-gel matrix has prevented leaching of the film. The immobilization of the enzyme and indicator was simple without chemical modification. The biosensing element on single sol-gel film has been placed inside the flow-cell for flow system. In the presence of a constant AChE, a color change of the BTB and the measured reflected signal at wavelength 622nm could be related to the pesticide concentration in the sample solutions. The performance of optical biosensor in the flow system has been optimized, including chemical and physical parameters. The response time of the biosensor is 8min. A linear calibration curve of chlorpyrifos against the percentage inhibition of AChE was obtained from 0.05 to 2.0mg/L of chlorpyrifos (18-80% inhibition, R(2)=0.9869, n=6). The detection limit for chlorpyrifos was 0.04mg/L. The results of the analysis of 0.5-1.5mg/L of chlorpyrifos using this optical biosensor agreed well with chromatographic method.     

Vapor zone velocities measurement using a capillary optical fiber sensor with an application to gas chromatography

A fiber optic sensor has been used for real-time measurement of the migration rates of all the compounds in a mixture separated by gas chromatography. The sensor makes use of a coated capillary optical fiber as the column. This new type of waveguide consists in a polarization-maintaining optical core positioned close to the capillary edge along the entire fiber length. The optical detection is performed through the coupling of the two polarization modes of the waveguide and this coupling is detected by a polarimetric interferometry technique. Through some signal processing, the resulting interferogram provides the migration rates of the various compounds of a gas mixture flowing in the capillary. One of the major benefits of this optical migration rate sensing is that the detection of each velocity peak appears as soon as the analyte enters the capillary fiber and the peaks are constantly measured during the whole separation process. Carrier gas acceleration occurring in the column is plainly demonstrated. This paper presents a proof-of-concept on a qualitative basis. The experiments were done at 29 °C because the current opto-fluidic set-up cannot withstand a higher temperature.     

Mass spectrometry of basic aluminum sucrose octasulfate using fast atom bombardment with a saturated tetramethylammonium ion sample matrix

A fast atom bombardment method to produce stable molecular cations of sucrose octasulfate^8? is described. The technique centers on ion exchange of the nonvolatile inorganic aluminum hydroxide cations for more volatile organic tetramethylammonium ions.